Strain Fitness in Rahnella sp. WP5 around EX31_RS02540

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS02535 and EX31_RS02540 are separated by 430 nucleotidesEX31_RS02540 and EX31_RS02545 are separated by 3 nucleotides EX31_RS02535: EX31_RS02535 - HlyD family efflux transporter periplasmic adaptor subunit, at 538,396 to 539,646 _RS02535 EX31_RS02540: EX31_RS02540 - helix-turn-helix transcriptional regulator, at 540,077 to 540,622 _RS02540 EX31_RS02545: EX31_RS02545 - alpha/beta hydrolase, at 540,626 to 541,681 _RS02545 Position (kb) 540 541Strain fitness (log2 ratio) -3 -2 -1 0 1at 539.104 kb on - strand, within EX31_RS02535at 539.104 kb on - strand, within EX31_RS02535at 539.107 kb on - strand, within EX31_RS02535at 539.151 kb on - strand, within EX31_RS02535at 539.151 kb on - strand, within EX31_RS02535at 539.151 kb on - strand, within EX31_RS02535at 539.210 kb on - strand, within EX31_RS02535at 539.254 kb on - strand, within EX31_RS02535at 539.254 kb on - strand, within EX31_RS02535at 539.329 kb on - strand, within EX31_RS02535at 539.345 kb on - strand, within EX31_RS02535at 539.345 kb on - strand, within EX31_RS02535at 539.356 kb on - strand, within EX31_RS02535at 539.356 kb on - strand, within EX31_RS02535at 539.356 kb on - strand, within EX31_RS02535at 539.356 kb on - strand, within EX31_RS02535at 539.356 kb on - strand, within EX31_RS02535at 539.379 kb on - strand, within EX31_RS02535at 539.379 kb on - strand, within EX31_RS02535at 539.379 kb on - strand, within EX31_RS02535at 539.428 kb on - strand, within EX31_RS02535at 539.538 kb on - strandat 539.542 kb on - strandat 539.587 kb on - strandat 539.639 kb on - strandat 539.639 kb on - strandat 539.639 kb on - strandat 539.896 kb on - strandat 539.927 kb on - strandat 540.055 kb on + strandat 540.056 kb on - strandat 540.060 kb on - strandat 540.077 kb on - strandat 540.160 kb on + strand, within EX31_RS02540at 540.161 kb on - strand, within EX31_RS02540at 540.164 kb on + strand, within EX31_RS02540at 540.214 kb on + strand, within EX31_RS02540at 540.220 kb on + strand, within EX31_RS02540at 540.416 kb on + strand, within EX31_RS02540at 540.417 kb on - strand, within EX31_RS02540at 540.548 kb on + strand, within EX31_RS02540at 540.736 kb on + strand, within EX31_RS02545at 540.761 kb on + strand, within EX31_RS02545at 540.940 kb on - strand, within EX31_RS02545at 540.991 kb on + strand, within EX31_RS02545at 541.207 kb on + strand, within EX31_RS02545at 541.208 kb on - strand, within EX31_RS02545at 541.208 kb on - strand, within EX31_RS02545at 541.283 kb on + strand, within EX31_RS02545at 541.284 kb on - strand, within EX31_RS02545at 541.284 kb on - strand, within EX31_RS02545at 541.284 kb on - strand, within EX31_RS02545at 541.286 kb on - strand, within EX31_RS02545at 541.429 kb on + strand, within EX31_RS02545at 541.470 kb on + strand, within EX31_RS02545at 541.471 kb on - strand, within EX31_RS02545at 541.471 kb on - strand, within EX31_RS02545at 541.509 kb on + strand, within EX31_RS02545at 541.510 kb on - strand, within EX31_RS02545at 541.565 kb on + strand, within EX31_RS02545at 541.566 kb on - strand, within EX31_RS02545at 541.566 kb on - strand, within EX31_RS02545

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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539,104 - EX31_RS02535 0.57 -0.2
539,104 - EX31_RS02535 0.57 +0.6
539,107 - EX31_RS02535 0.57 +0.6
539,151 - EX31_RS02535 0.60 -0.2
539,151 - EX31_RS02535 0.60 +0.2
539,151 - EX31_RS02535 0.60 -0.2
539,210 - EX31_RS02535 0.65 -0.1
539,254 - EX31_RS02535 0.69 +1.4
539,254 - EX31_RS02535 0.69 +1.7
539,329 - EX31_RS02535 0.75 +0.1
539,345 - EX31_RS02535 0.76 -0.9
539,345 - EX31_RS02535 0.76 -0.7
539,356 - EX31_RS02535 0.77 +1.3
539,356 - EX31_RS02535 0.77 +0.3
539,356 - EX31_RS02535 0.77 -0.2
539,356 - EX31_RS02535 0.77 -0.8
539,356 - EX31_RS02535 0.77 +0.4
539,379 - EX31_RS02535 0.79 +1.1
539,379 - EX31_RS02535 0.79 -0.4
539,379 - EX31_RS02535 0.79 -0.7
539,428 - EX31_RS02535 0.82 -0.3
539,538 - -0.5
539,542 - -0.3
539,587 - +0.1
539,639 - +0.6
539,639 - -1.8
539,639 - -0.4
539,896 - -0.1
539,927 - -0.9
540,055 + -1.4
540,056 - -0.4
540,060 - -1.1
540,077 - +0.1
540,160 + EX31_RS02540 0.15 -2.0
540,161 - EX31_RS02540 0.15 -3.1
540,164 + EX31_RS02540 0.16 -0.3
540,214 + EX31_RS02540 0.25 -0.4
540,220 + EX31_RS02540 0.26 -0.5
540,416 + EX31_RS02540 0.62 -2.0
540,417 - EX31_RS02540 0.62 +0.0
540,548 + EX31_RS02540 0.86 +0.3
540,736 + EX31_RS02545 0.10 +0.1
540,761 + EX31_RS02545 0.13 -0.1
540,940 - EX31_RS02545 0.30 -1.4
540,991 + EX31_RS02545 0.35 -0.6
541,207 + EX31_RS02545 0.55 +0.5
541,208 - EX31_RS02545 0.55 -2.2
541,208 - EX31_RS02545 0.55 -1.8
541,283 + EX31_RS02545 0.62 -0.2
541,284 - EX31_RS02545 0.62 -1.2
541,284 - EX31_RS02545 0.62 -0.2
541,284 - EX31_RS02545 0.62 -0.2
541,286 - EX31_RS02545 0.62 -0.5
541,429 + EX31_RS02545 0.76 -0.7
541,470 + EX31_RS02545 0.80 -0.2
541,471 - EX31_RS02545 0.80 -0.1
541,471 - EX31_RS02545 0.80 +0.6
541,509 + EX31_RS02545 0.84 +1.3
541,510 - EX31_RS02545 0.84 +0.4
541,565 + EX31_RS02545 0.89 -1.5
541,566 - EX31_RS02545 0.89 -0.6
541,566 - EX31_RS02545 0.89 +1.0

Or see this region's nucleotide sequence