Experiment: NLN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS01450 and EX31_RS01455 are separated by 32 nucleotides EX31_RS01455 and EX31_RS01460 are separated by 122 nucleotides
EX31_RS01450: EX31_RS01450 - hypothetical protein, at 325,657 to 327,060
_RS01450
EX31_RS01455: EX31_RS01455 - alpha-amylase, at 327,093 to 328,574
_RS01455
EX31_RS01460: EX31_RS01460 - glycine betaine/L-proline transporter ProP, at 328,697 to 330,199
_RS01460
Position (kb) 327
328
329 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 326.186 kb on + strand, within EX31_RS01450 at 326.186 kb on + strand, within EX31_RS01450 at 326.186 kb on + strand, within EX31_RS01450 at 326.186 kb on + strand, within EX31_RS01450 at 326.187 kb on - strand, within EX31_RS01450 at 326.204 kb on + strand, within EX31_RS01450 at 326.204 kb on + strand, within EX31_RS01450 at 326.205 kb on - strand, within EX31_RS01450 at 326.207 kb on - strand, within EX31_RS01450 at 326.238 kb on + strand, within EX31_RS01450 at 326.284 kb on + strand, within EX31_RS01450 at 326.284 kb on + strand, within EX31_RS01450 at 326.284 kb on + strand, within EX31_RS01450 at 326.351 kb on + strand, within EX31_RS01450 at 326.351 kb on + strand, within EX31_RS01450 at 326.352 kb on - strand, within EX31_RS01450 at 326.359 kb on + strand, within EX31_RS01450 at 326.359 kb on + strand, within EX31_RS01450 at 326.491 kb on + strand, within EX31_RS01450 at 326.492 kb on - strand, within EX31_RS01450 at 326.492 kb on - strand, within EX31_RS01450 at 326.492 kb on - strand, within EX31_RS01450 at 326.504 kb on + strand, within EX31_RS01450 at 326.513 kb on - strand, within EX31_RS01450 at 326.562 kb on - strand, within EX31_RS01450 at 326.677 kb on + strand, within EX31_RS01450 at 326.677 kb on + strand, within EX31_RS01450 at 326.677 kb on + strand, within EX31_RS01450 at 326.678 kb on - strand, within EX31_RS01450 at 326.678 kb on - strand, within EX31_RS01450 at 326.678 kb on - strand, within EX31_RS01450 at 326.678 kb on - strand, within EX31_RS01450 at 326.678 kb on - strand, within EX31_RS01450 at 326.678 kb on - strand, within EX31_RS01450 at 326.678 kb on - strand, within EX31_RS01450 at 326.727 kb on + strand, within EX31_RS01450 at 326.728 kb on - strand, within EX31_RS01450 at 326.728 kb on - strand, within EX31_RS01450 at 326.775 kb on + strand, within EX31_RS01450 at 326.775 kb on + strand, within EX31_RS01450 at 326.786 kb on + strand, within EX31_RS01450 at 326.786 kb on + strand, within EX31_RS01450 at 326.786 kb on + strand, within EX31_RS01450 at 326.811 kb on + strand, within EX31_RS01450 at 326.829 kb on + strand, within EX31_RS01450 at 326.829 kb on + strand, within EX31_RS01450 at 326.829 kb on + strand, within EX31_RS01450 at 326.829 kb on + strand, within EX31_RS01450 at 326.829 kb on + strand, within EX31_RS01450 at 326.830 kb on - strand, within EX31_RS01450 at 326.851 kb on + strand, within EX31_RS01450 at 326.851 kb on + strand, within EX31_RS01450 at 326.851 kb on + strand, within EX31_RS01450 at 326.852 kb on - strand, within EX31_RS01450 at 326.852 kb on - strand, within EX31_RS01450 at 326.852 kb on - strand, within EX31_RS01450 at 326.858 kb on + strand, within EX31_RS01450 at 326.941 kb on - strand at 327.075 kb on - strand at 327.167 kb on + strand at 327.168 kb on - strand at 327.168 kb on - strand at 327.421 kb on + strand, within EX31_RS01455 at 327.480 kb on + strand, within EX31_RS01455 at 327.481 kb on - strand, within EX31_RS01455 at 327.481 kb on - strand, within EX31_RS01455 at 327.568 kb on - strand, within EX31_RS01455 at 327.746 kb on - strand, within EX31_RS01455 at 327.746 kb on - strand, within EX31_RS01455 at 327.746 kb on - strand, within EX31_RS01455 at 327.778 kb on + strand, within EX31_RS01455 at 327.793 kb on + strand, within EX31_RS01455 at 327.793 kb on + strand, within EX31_RS01455 at 327.794 kb on - strand, within EX31_RS01455 at 327.821 kb on + strand, within EX31_RS01455 at 327.822 kb on - strand, within EX31_RS01455 at 327.923 kb on - strand, within EX31_RS01455 at 327.985 kb on + strand, within EX31_RS01455 at 328.259 kb on + strand, within EX31_RS01455 at 328.260 kb on - strand, within EX31_RS01455 at 328.295 kb on + strand, within EX31_RS01455 at 328.296 kb on - strand, within EX31_RS01455 at 328.326 kb on + strand, within EX31_RS01455 at 328.327 kb on - strand, within EX31_RS01455 at 328.400 kb on - strand, within EX31_RS01455 at 328.400 kb on - strand, within EX31_RS01455 at 328.400 kb on - strand, within EX31_RS01455 at 328.400 kb on - strand, within EX31_RS01455 at 328.400 kb on - strand, within EX31_RS01455 at 328.408 kb on + strand, within EX31_RS01455 at 328.441 kb on + strand at 328.442 kb on - strand at 328.442 kb on - strand at 328.442 kb on - strand at 328.538 kb on - strand at 328.538 kb on - strand at 328.538 kb on - strand at 328.563 kb on - strand at 328.609 kb on + strand at 328.610 kb on - strand at 328.886 kb on - strand, within EX31_RS01460 at 328.930 kb on - strand, within EX31_RS01460 at 328.930 kb on - strand, within EX31_RS01460 at 328.930 kb on - strand, within EX31_RS01460 at 328.933 kb on - strand, within EX31_RS01460 at 328.944 kb on + strand, within EX31_RS01460 at 328.944 kb on + strand, within EX31_RS01460 at 328.944 kb on + strand, within EX31_RS01460 at 328.945 kb on - strand, within EX31_RS01460 at 328.945 kb on - strand, within EX31_RS01460 at 328.945 kb on - strand, within EX31_RS01460 at 328.945 kb on - strand, within EX31_RS01460 at 328.945 kb on - strand, within EX31_RS01460 at 329.048 kb on - strand, within EX31_RS01460 at 329.048 kb on - strand, within EX31_RS01460 at 329.048 kb on - strand, within EX31_RS01460 at 329.048 kb on - strand, within EX31_RS01460 at 329.048 kb on - strand, within EX31_RS01460 at 329.144 kb on + strand, within EX31_RS01460 at 329.224 kb on + strand, within EX31_RS01460 at 329.265 kb on - strand, within EX31_RS01460 at 329.322 kb on + strand, within EX31_RS01460 at 329.322 kb on + strand, within EX31_RS01460 at 329.343 kb on + strand, within EX31_RS01460 at 329.344 kb on - strand, within EX31_RS01460 at 329.344 kb on - strand, within EX31_RS01460 at 329.355 kb on + strand, within EX31_RS01460 at 329.356 kb on - strand, within EX31_RS01460 at 329.356 kb on - strand, within EX31_RS01460 at 329.370 kb on + strand, within EX31_RS01460 at 329.370 kb on + strand, within EX31_RS01460 at 329.370 kb on + strand, within EX31_RS01460 at 329.370 kb on + strand, within EX31_RS01460 at 329.371 kb on - strand, within EX31_RS01460 at 329.371 kb on - strand, within EX31_RS01460 at 329.371 kb on - strand, within EX31_RS01460 at 329.371 kb on - strand, within EX31_RS01460 at 329.371 kb on - strand, within EX31_RS01460 at 329.371 kb on - strand, within EX31_RS01460 at 329.374 kb on - strand, within EX31_RS01460 at 329.550 kb on + strand, within EX31_RS01460 at 329.550 kb on + strand, within EX31_RS01460
Per-strain Table
Position Strand Gene LocusTag Fraction NLN remove 326,186 + EX31_RS01450 0.38 -0.0 326,186 + EX31_RS01450 0.38 +0.1 326,186 + EX31_RS01450 0.38 -0.1 326,186 + EX31_RS01450 0.38 -0.1 326,187 - EX31_RS01450 0.38 +0.2 326,204 + EX31_RS01450 0.39 +1.0 326,204 + EX31_RS01450 0.39 +0.3 326,205 - EX31_RS01450 0.39 +1.4 326,207 - EX31_RS01450 0.39 -0.4 326,238 + EX31_RS01450 0.41 +0.5 326,284 + EX31_RS01450 0.45 +1.1 326,284 + EX31_RS01450 0.45 +0.2 326,284 + EX31_RS01450 0.45 +0.1 326,351 + EX31_RS01450 0.49 -0.4 326,351 + EX31_RS01450 0.49 -1.1 326,352 - EX31_RS01450 0.50 +0.6 326,359 + EX31_RS01450 0.50 -0.3 326,359 + EX31_RS01450 0.50 -0.6 326,491 + EX31_RS01450 0.59 -1.2 326,492 - EX31_RS01450 0.59 -0.1 326,492 - EX31_RS01450 0.59 -0.5 326,492 - EX31_RS01450 0.59 -0.8 326,504 + EX31_RS01450 0.60 -0.7 326,513 - EX31_RS01450 0.61 +0.7 326,562 - EX31_RS01450 0.64 -1.4 326,677 + EX31_RS01450 0.73 -0.6 326,677 + EX31_RS01450 0.73 +0.7 326,677 + EX31_RS01450 0.73 +0.1 326,678 - EX31_RS01450 0.73 +0.4 326,678 - EX31_RS01450 0.73 +1.3 326,678 - EX31_RS01450 0.73 +0.7 326,678 - EX31_RS01450 0.73 -0.4 326,678 - EX31_RS01450 0.73 +0.8 326,678 - EX31_RS01450 0.73 +0.6 326,678 - EX31_RS01450 0.73 -0.3 326,727 + EX31_RS01450 0.76 +0.0 326,728 - EX31_RS01450 0.76 -1.1 326,728 - EX31_RS01450 0.76 +0.6 326,775 + EX31_RS01450 0.80 +1.5 326,775 + EX31_RS01450 0.80 +0.5 326,786 + EX31_RS01450 0.80 +0.3 326,786 + EX31_RS01450 0.80 -0.8 326,786 + EX31_RS01450 0.80 -0.1 326,811 + EX31_RS01450 0.82 -0.2 326,829 + EX31_RS01450 0.83 +0.4 326,829 + EX31_RS01450 0.83 -0.4 326,829 + EX31_RS01450 0.83 -0.1 326,829 + EX31_RS01450 0.83 -0.5 326,829 + EX31_RS01450 0.83 -0.2 326,830 - EX31_RS01450 0.84 -1.7 326,851 + EX31_RS01450 0.85 +2.2 326,851 + EX31_RS01450 0.85 +1.8 326,851 + EX31_RS01450 0.85 -0.5 326,852 - EX31_RS01450 0.85 +1.4 326,852 - EX31_RS01450 0.85 +0.4 326,852 - EX31_RS01450 0.85 -0.3 326,858 + EX31_RS01450 0.86 +0.3 326,941 - -0.7 327,075 - +1.5 327,167 + +0.2 327,168 - +1.4 327,168 - +0.3 327,421 + EX31_RS01455 0.22 -1.0 327,480 + EX31_RS01455 0.26 -0.9 327,481 - EX31_RS01455 0.26 +1.2 327,481 - EX31_RS01455 0.26 -0.7 327,568 - EX31_RS01455 0.32 +0.0 327,746 - EX31_RS01455 0.44 +0.6 327,746 - EX31_RS01455 0.44 +1.9 327,746 - EX31_RS01455 0.44 -0.7 327,778 + EX31_RS01455 0.46 +0.1 327,793 + EX31_RS01455 0.47 -0.1 327,793 + EX31_RS01455 0.47 -0.2 327,794 - EX31_RS01455 0.47 +0.3 327,821 + EX31_RS01455 0.49 -1.3 327,822 - EX31_RS01455 0.49 +0.5 327,923 - EX31_RS01455 0.56 +0.5 327,985 + EX31_RS01455 0.60 -1.0 328,259 + EX31_RS01455 0.79 +0.0 328,260 - EX31_RS01455 0.79 +0.7 328,295 + EX31_RS01455 0.81 +0.2 328,296 - EX31_RS01455 0.81 -0.7 328,326 + EX31_RS01455 0.83 -1.2 328,327 - EX31_RS01455 0.83 +0.8 328,400 - EX31_RS01455 0.88 -0.3 328,400 - EX31_RS01455 0.88 -0.4 328,400 - EX31_RS01455 0.88 +1.0 328,400 - EX31_RS01455 0.88 +1.4 328,400 - EX31_RS01455 0.88 -1.2 328,408 + EX31_RS01455 0.89 +0.6 328,441 + -1.0 328,442 - -1.2 328,442 - -0.7 328,442 - +0.8 328,538 - -0.3 328,538 - +0.3 328,538 - -2.4 328,563 - -0.5 328,609 + -0.1 328,610 - -1.0 328,886 - EX31_RS01460 0.13 +0.3 328,930 - EX31_RS01460 0.16 -0.0 328,930 - EX31_RS01460 0.16 -0.2 328,930 - EX31_RS01460 0.16 -0.4 328,933 - EX31_RS01460 0.16 -0.4 328,944 + EX31_RS01460 0.16 -0.1 328,944 + EX31_RS01460 0.16 +0.8 328,944 + EX31_RS01460 0.16 +0.7 328,945 - EX31_RS01460 0.17 -0.2 328,945 - EX31_RS01460 0.17 +0.1 328,945 - EX31_RS01460 0.17 -0.1 328,945 - EX31_RS01460 0.17 -1.7 328,945 - EX31_RS01460 0.17 -0.9 329,048 - EX31_RS01460 0.23 +1.2 329,048 - EX31_RS01460 0.23 -0.8 329,048 - EX31_RS01460 0.23 +0.4 329,048 - EX31_RS01460 0.23 +0.2 329,048 - EX31_RS01460 0.23 +0.4 329,144 + EX31_RS01460 0.30 -1.0 329,224 + EX31_RS01460 0.35 -0.7 329,265 - EX31_RS01460 0.38 -0.5 329,322 + EX31_RS01460 0.42 -2.8 329,322 + EX31_RS01460 0.42 +0.8 329,343 + EX31_RS01460 0.43 +2.0 329,344 - EX31_RS01460 0.43 -0.0 329,344 - EX31_RS01460 0.43 -0.3 329,355 + EX31_RS01460 0.44 +1.5 329,356 - EX31_RS01460 0.44 +0.6 329,356 - EX31_RS01460 0.44 +0.5 329,370 + EX31_RS01460 0.45 -1.0 329,370 + EX31_RS01460 0.45 +0.8 329,370 + EX31_RS01460 0.45 -1.4 329,370 + EX31_RS01460 0.45 -1.7 329,371 - EX31_RS01460 0.45 +0.5 329,371 - EX31_RS01460 0.45 -0.2 329,371 - EX31_RS01460 0.45 +0.1 329,371 - EX31_RS01460 0.45 -1.4 329,371 - EX31_RS01460 0.45 +0.0 329,371 - EX31_RS01460 0.45 +0.3 329,374 - EX31_RS01460 0.45 +0.9 329,550 + EX31_RS01460 0.57 -0.7 329,550 + EX31_RS01460 0.57 +0.9
Or see this region's nucleotide sequence