Strain Fitness in Rahnella sp. WP5 around EX31_RS00395

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS00390 and EX31_RS00395 are separated by 16 nucleotidesEX31_RS00395 and EX31_RS00400 overlap by 1 nucleotides EX31_RS00390: EX31_RS00390 - GNAT family N-acetyltransferase, at 81,390 to 82,371 _RS00390 EX31_RS00395: EX31_RS00395 - ABC transporter permease subunit, at 82,388 to 84,175 _RS00395 EX31_RS00400: EX31_RS00400 - ABC transporter substrate-binding protein, at 84,175 to 85,683 _RS00400 Position (kb) 82 83 84 85Strain fitness (log2 ratio) -2 -1 0 1 2at 81.426 kb on + strandat 81.455 kb on + strandat 81.478 kb on + strandat 81.478 kb on + strandat 81.485 kb on + strandat 81.507 kb on + strand, within EX31_RS00390at 81.507 kb on + strand, within EX31_RS00390at 81.507 kb on + strand, within EX31_RS00390at 81.508 kb on - strand, within EX31_RS00390at 81.508 kb on - strand, within EX31_RS00390at 81.544 kb on + strand, within EX31_RS00390at 81.544 kb on + strand, within EX31_RS00390at 81.577 kb on + strand, within EX31_RS00390at 81.748 kb on + strand, within EX31_RS00390at 81.749 kb on - strand, within EX31_RS00390at 81.766 kb on + strand, within EX31_RS00390at 81.766 kb on + strand, within EX31_RS00390at 81.770 kb on + strand, within EX31_RS00390at 81.778 kb on + strand, within EX31_RS00390at 81.797 kb on + strand, within EX31_RS00390at 81.857 kb on + strand, within EX31_RS00390at 81.857 kb on + strand, within EX31_RS00390at 81.861 kb on + strand, within EX31_RS00390at 81.861 kb on + strand, within EX31_RS00390at 81.862 kb on - strand, within EX31_RS00390at 81.914 kb on + strand, within EX31_RS00390at 81.929 kb on + strand, within EX31_RS00390at 81.950 kb on + strand, within EX31_RS00390at 81.967 kb on + strand, within EX31_RS00390at 81.984 kb on + strand, within EX31_RS00390at 81.984 kb on + strand, within EX31_RS00390at 81.985 kb on - strand, within EX31_RS00390at 82.019 kb on + strand, within EX31_RS00390at 82.019 kb on + strand, within EX31_RS00390at 82.019 kb on + strand, within EX31_RS00390at 82.127 kb on + strand, within EX31_RS00390at 82.264 kb on + strand, within EX31_RS00390at 82.264 kb on + strand, within EX31_RS00390at 82.265 kb on - strand, within EX31_RS00390at 82.370 kb on - strandat 82.502 kb on - strandat 82.503 kb on + strandat 82.503 kb on + strandat 82.504 kb on - strandat 82.656 kb on + strand, within EX31_RS00395at 82.656 kb on + strand, within EX31_RS00395at 82.657 kb on - strand, within EX31_RS00395at 82.657 kb on - strand, within EX31_RS00395at 82.657 kb on - strand, within EX31_RS00395at 82.661 kb on + strand, within EX31_RS00395at 82.661 kb on + strand, within EX31_RS00395at 82.661 kb on + strand, within EX31_RS00395at 82.661 kb on + strand, within EX31_RS00395at 82.661 kb on + strand, within EX31_RS00395at 82.661 kb on + strand, within EX31_RS00395at 82.661 kb on + strand, within EX31_RS00395at 82.662 kb on - strand, within EX31_RS00395at 82.710 kb on + strand, within EX31_RS00395at 82.710 kb on + strand, within EX31_RS00395at 82.710 kb on + strand, within EX31_RS00395at 82.710 kb on + strand, within EX31_RS00395at 82.710 kb on + strand, within EX31_RS00395at 82.711 kb on - strand, within EX31_RS00395at 82.885 kb on + strand, within EX31_RS00395at 82.885 kb on + strand, within EX31_RS00395at 83.055 kb on + strand, within EX31_RS00395at 83.056 kb on - strand, within EX31_RS00395at 83.207 kb on + strand, within EX31_RS00395at 83.210 kb on + strand, within EX31_RS00395at 83.282 kb on + strand, within EX31_RS00395at 83.586 kb on + strand, within EX31_RS00395at 83.586 kb on + strand, within EX31_RS00395at 83.587 kb on - strand, within EX31_RS00395at 83.587 kb on - strand, within EX31_RS00395at 83.642 kb on - strand, within EX31_RS00395at 83.933 kb on + strand, within EX31_RS00395at 83.934 kb on - strand, within EX31_RS00395at 83.934 kb on - strand, within EX31_RS00395at 83.934 kb on - strand, within EX31_RS00395at 84.056 kb on + strandat 84.056 kb on + strandat 84.057 kb on - strandat 84.057 kb on - strandat 84.057 kb on - strandat 84.160 kb on - strandat 84.426 kb on + strand, within EX31_RS00400at 84.427 kb on - strand, within EX31_RS00400at 84.427 kb on - strand, within EX31_RS00400at 84.455 kb on + strand, within EX31_RS00400at 84.456 kb on - strand, within EX31_RS00400at 84.456 kb on - strand, within EX31_RS00400at 84.456 kb on - strand, within EX31_RS00400at 84.459 kb on + strand, within EX31_RS00400at 84.459 kb on + strand, within EX31_RS00400at 84.459 kb on + strand, within EX31_RS00400at 84.459 kb on + strand, within EX31_RS00400at 84.459 kb on + strand, within EX31_RS00400at 84.459 kb on + strand, within EX31_RS00400at 84.459 kb on + strand, within EX31_RS00400at 84.459 kb on + strand, within EX31_RS00400at 84.459 kb on + strand, within EX31_RS00400at 84.459 kb on + strand, within EX31_RS00400at 84.459 kb on + strand, within EX31_RS00400at 84.459 kb on + strand, within EX31_RS00400at 84.460 kb on - strand, within EX31_RS00400at 84.460 kb on - strand, within EX31_RS00400at 84.460 kb on - strand, within EX31_RS00400at 84.460 kb on - strand, within EX31_RS00400at 84.460 kb on - strand, within EX31_RS00400at 84.460 kb on - strand, within EX31_RS00400at 84.460 kb on - strand, within EX31_RS00400at 84.460 kb on - strand, within EX31_RS00400at 84.460 kb on - strand, within EX31_RS00400at 84.460 kb on - strand, within EX31_RS00400at 84.460 kb on - strand, within EX31_RS00400at 84.460 kb on - strand, within EX31_RS00400at 84.460 kb on - strand, within EX31_RS00400at 84.460 kb on - strand, within EX31_RS00400at 84.460 kb on - strand, within EX31_RS00400at 84.460 kb on - strand, within EX31_RS00400at 84.461 kb on + strand, within EX31_RS00400at 84.461 kb on + strand, within EX31_RS00400at 84.461 kb on + strand, within EX31_RS00400at 84.461 kb on + strand, within EX31_RS00400at 84.462 kb on - strand, within EX31_RS00400at 84.462 kb on - strand, within EX31_RS00400at 84.462 kb on - strand, within EX31_RS00400at 84.462 kb on - strand, within EX31_RS00400at 84.462 kb on - strand, within EX31_RS00400at 84.462 kb on - strand, within EX31_RS00400at 84.462 kb on - strand, within EX31_RS00400at 84.462 kb on - strand, within EX31_RS00400at 84.462 kb on - strand, within EX31_RS00400at 84.462 kb on - strand, within EX31_RS00400at 84.502 kb on + strand, within EX31_RS00400at 84.507 kb on + strand, within EX31_RS00400at 84.508 kb on - strand, within EX31_RS00400at 84.565 kb on + strand, within EX31_RS00400at 84.565 kb on + strand, within EX31_RS00400at 84.611 kb on + strand, within EX31_RS00400at 84.612 kb on - strand, within EX31_RS00400at 84.612 kb on - strand, within EX31_RS00400at 84.787 kb on - strand, within EX31_RS00400at 84.873 kb on - strand, within EX31_RS00400at 84.873 kb on - strand, within EX31_RS00400at 84.910 kb on + strand, within EX31_RS00400at 84.910 kb on + strand, within EX31_RS00400at 84.960 kb on + strand, within EX31_RS00400at 84.980 kb on - strand, within EX31_RS00400

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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81,426 + +1.3
81,455 + -0.1
81,478 + +0.4
81,478 + -0.0
81,485 + -0.1
81,507 + EX31_RS00390 0.12 +1.1
81,507 + EX31_RS00390 0.12 +0.8
81,507 + EX31_RS00390 0.12 +1.0
81,508 - EX31_RS00390 0.12 -1.0
81,508 - EX31_RS00390 0.12 -0.3
81,544 + EX31_RS00390 0.16 +0.1
81,544 + EX31_RS00390 0.16 +0.7
81,577 + EX31_RS00390 0.19 +0.4
81,748 + EX31_RS00390 0.36 +0.4
81,749 - EX31_RS00390 0.37 -1.3
81,766 + EX31_RS00390 0.38 -0.6
81,766 + EX31_RS00390 0.38 -0.1
81,770 + EX31_RS00390 0.39 +0.2
81,778 + EX31_RS00390 0.40 -0.0
81,797 + EX31_RS00390 0.41 +0.9
81,857 + EX31_RS00390 0.48 -0.2
81,857 + EX31_RS00390 0.48 +0.7
81,861 + EX31_RS00390 0.48 +0.1
81,861 + EX31_RS00390 0.48 -0.5
81,862 - EX31_RS00390 0.48 +0.4
81,914 + EX31_RS00390 0.53 +0.4
81,929 + EX31_RS00390 0.55 +0.3
81,950 + EX31_RS00390 0.57 +0.2
81,967 + EX31_RS00390 0.59 -0.3
81,984 + EX31_RS00390 0.60 +0.6
81,984 + EX31_RS00390 0.60 +0.7
81,985 - EX31_RS00390 0.61 -0.8
82,019 + EX31_RS00390 0.64 +0.3
82,019 + EX31_RS00390 0.64 +0.6
82,019 + EX31_RS00390 0.64 -0.2
82,127 + EX31_RS00390 0.75 -0.1
82,264 + EX31_RS00390 0.89 +0.3
82,264 + EX31_RS00390 0.89 -0.4
82,265 - EX31_RS00390 0.89 +1.0
82,370 - -0.5
82,502 - -0.3
82,503 + +1.9
82,503 + -0.8
82,504 - +0.1
82,656 + EX31_RS00395 0.15 +0.9
82,656 + EX31_RS00395 0.15 +0.3
82,657 - EX31_RS00395 0.15 -0.3
82,657 - EX31_RS00395 0.15 -0.4
82,657 - EX31_RS00395 0.15 +1.8
82,661 + EX31_RS00395 0.15 +0.7
82,661 + EX31_RS00395 0.15 +0.7
82,661 + EX31_RS00395 0.15 +0.5
82,661 + EX31_RS00395 0.15 +1.4
82,661 + EX31_RS00395 0.15 -0.6
82,661 + EX31_RS00395 0.15 -1.3
82,661 + EX31_RS00395 0.15 -0.0
82,662 - EX31_RS00395 0.15 +0.2
82,710 + EX31_RS00395 0.18 -2.3
82,710 + EX31_RS00395 0.18 -0.1
82,710 + EX31_RS00395 0.18 -1.8
82,710 + EX31_RS00395 0.18 -0.2
82,710 + EX31_RS00395 0.18 -0.1
82,711 - EX31_RS00395 0.18 -2.6
82,885 + EX31_RS00395 0.28 -0.2
82,885 + EX31_RS00395 0.28 -0.6
83,055 + EX31_RS00395 0.37 -0.2
83,056 - EX31_RS00395 0.37 +0.3
83,207 + EX31_RS00395 0.46 +1.4
83,210 + EX31_RS00395 0.46 -0.8
83,282 + EX31_RS00395 0.50 +0.8
83,586 + EX31_RS00395 0.67 -0.4
83,586 + EX31_RS00395 0.67 +0.9
83,587 - EX31_RS00395 0.67 -0.3
83,587 - EX31_RS00395 0.67 -0.2
83,642 - EX31_RS00395 0.70 -0.3
83,933 + EX31_RS00395 0.86 -1.2
83,934 - EX31_RS00395 0.86 +0.4
83,934 - EX31_RS00395 0.86 +0.6
83,934 - EX31_RS00395 0.86 -0.3
84,056 + +0.5
84,056 + +0.6
84,057 - -0.2
84,057 - +0.3
84,057 - -0.3
84,160 - -0.9
84,426 + EX31_RS00400 0.17 -0.0
84,427 - EX31_RS00400 0.17 -0.9
84,427 - EX31_RS00400 0.17 -0.8
84,455 + EX31_RS00400 0.19 -0.8
84,456 - EX31_RS00400 0.19 -0.2
84,456 - EX31_RS00400 0.19 +1.2
84,456 - EX31_RS00400 0.19 +0.4
84,459 + EX31_RS00400 0.19 +0.3
84,459 + EX31_RS00400 0.19 +0.5
84,459 + EX31_RS00400 0.19 -1.0
84,459 + EX31_RS00400 0.19 -0.1
84,459 + EX31_RS00400 0.19 -0.6
84,459 + EX31_RS00400 0.19 +0.4
84,459 + EX31_RS00400 0.19 +0.3
84,459 + EX31_RS00400 0.19 -0.6
84,459 + EX31_RS00400 0.19 +0.2
84,459 + EX31_RS00400 0.19 -2.7
84,459 + EX31_RS00400 0.19 +0.1
84,459 + EX31_RS00400 0.19 -0.1
84,460 - EX31_RS00400 0.19 -1.1
84,460 - EX31_RS00400 0.19 +0.3
84,460 - EX31_RS00400 0.19 +0.8
84,460 - EX31_RS00400 0.19 +0.1
84,460 - EX31_RS00400 0.19 -0.4
84,460 - EX31_RS00400 0.19 +0.5
84,460 - EX31_RS00400 0.19 +0.6
84,460 - EX31_RS00400 0.19 +0.0
84,460 - EX31_RS00400 0.19 +0.9
84,460 - EX31_RS00400 0.19 -0.2
84,460 - EX31_RS00400 0.19 +0.1
84,460 - EX31_RS00400 0.19 -0.2
84,460 - EX31_RS00400 0.19 +0.1
84,460 - EX31_RS00400 0.19 -0.4
84,460 - EX31_RS00400 0.19 -0.4
84,460 - EX31_RS00400 0.19 -0.6
84,461 + EX31_RS00400 0.19 -0.5
84,461 + EX31_RS00400 0.19 -0.4
84,461 + EX31_RS00400 0.19 -1.0
84,461 + EX31_RS00400 0.19 -0.1
84,462 - EX31_RS00400 0.19 +1.0
84,462 - EX31_RS00400 0.19 +0.0
84,462 - EX31_RS00400 0.19 -0.7
84,462 - EX31_RS00400 0.19 -0.5
84,462 - EX31_RS00400 0.19 +0.7
84,462 - EX31_RS00400 0.19 +0.1
84,462 - EX31_RS00400 0.19 +0.1
84,462 - EX31_RS00400 0.19 -0.3
84,462 - EX31_RS00400 0.19 -0.3
84,462 - EX31_RS00400 0.19 +0.0
84,502 + EX31_RS00400 0.22 +1.9
84,507 + EX31_RS00400 0.22 +0.3
84,508 - EX31_RS00400 0.22 +0.0
84,565 + EX31_RS00400 0.26 -1.1
84,565 + EX31_RS00400 0.26 -0.4
84,611 + EX31_RS00400 0.29 -1.9
84,612 - EX31_RS00400 0.29 +1.2
84,612 - EX31_RS00400 0.29 +0.1
84,787 - EX31_RS00400 0.41 -0.4
84,873 - EX31_RS00400 0.46 +1.3
84,873 - EX31_RS00400 0.46 -0.0
84,910 + EX31_RS00400 0.49 +0.4
84,910 + EX31_RS00400 0.49 +0.2
84,960 + EX31_RS00400 0.52 -1.1
84,980 - EX31_RS00400 0.53 -2.0

Or see this region's nucleotide sequence