Strain Fitness in Rahnella sp. WP5 around EX31_RS23670

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS23665 and EX31_RS23670 are separated by 271 nucleotidesEX31_RS23670 and EX31_RS23675 are separated by 160 nucleotidesEX31_RS23675 and EX31_RS23680 are separated by 41 nucleotides EX31_RS23665: EX31_RS23665 - NADP-dependent oxidoreductase, at 497,223 to 498,260 _RS23665 EX31_RS23670: EX31_RS23670 - acid phosphatase AphA, at 498,532 to 499,245 _RS23670 EX31_RS23675: EX31_RS23675 - ABC transporter substrate-binding protein, at 499,406 to 500,185 _RS23675 EX31_RS23680: EX31_RS23680 - aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme, at 500,227 to 501,381 _RS23680 Position (kb) 498 499 500Strain fitness (log2 ratio) -2 -1 0 1 2at 497.594 kb on - strand, within EX31_RS23665at 497.594 kb on - strand, within EX31_RS23665at 497.594 kb on - strand, within EX31_RS23665at 497.748 kb on - strand, within EX31_RS23665at 497.843 kb on + strand, within EX31_RS23665at 497.868 kb on + strand, within EX31_RS23665at 497.868 kb on + strand, within EX31_RS23665at 497.868 kb on + strand, within EX31_RS23665at 497.948 kb on - strand, within EX31_RS23665at 497.948 kb on - strand, within EX31_RS23665at 498.042 kb on + strand, within EX31_RS23665at 498.043 kb on - strand, within EX31_RS23665at 498.043 kb on - strand, within EX31_RS23665at 498.070 kb on + strand, within EX31_RS23665at 498.071 kb on - strand, within EX31_RS23665at 498.071 kb on - strand, within EX31_RS23665at 498.089 kb on + strand, within EX31_RS23665at 498.089 kb on + strand, within EX31_RS23665at 498.089 kb on + strand, within EX31_RS23665at 498.090 kb on - strand, within EX31_RS23665at 498.090 kb on - strand, within EX31_RS23665at 498.090 kb on - strand, within EX31_RS23665at 498.128 kb on + strand, within EX31_RS23665at 498.128 kb on + strand, within EX31_RS23665at 498.138 kb on + strand, within EX31_RS23665at 498.138 kb on + strand, within EX31_RS23665at 498.139 kb on - strand, within EX31_RS23665at 498.139 kb on - strand, within EX31_RS23665at 498.139 kb on - strand, within EX31_RS23665at 498.260 kb on + strandat 498.260 kb on + strandat 498.260 kb on + strandat 498.261 kb on - strandat 498.285 kb on - strandat 498.305 kb on + strandat 498.306 kb on - strandat 498.306 kb on - strandat 498.306 kb on - strandat 498.306 kb on - strandat 498.306 kb on - strandat 498.316 kb on - strandat 498.319 kb on + strandat 498.319 kb on + strandat 498.319 kb on + strandat 498.319 kb on + strandat 498.320 kb on - strandat 498.321 kb on + strandat 498.321 kb on + strandat 498.322 kb on - strandat 498.322 kb on - strandat 498.329 kb on + strandat 498.354 kb on + strandat 498.354 kb on + strandat 498.413 kb on + strandat 498.414 kb on - strandat 498.459 kb on + strandat 498.469 kb on - strandat 498.496 kb on - strandat 498.507 kb on + strandat 498.508 kb on - strandat 498.510 kb on + strandat 498.517 kb on - strandat 498.517 kb on - strandat 498.517 kb on - strandat 498.530 kb on + strandat 498.530 kb on + strandat 498.530 kb on + strandat 498.537 kb on + strandat 498.609 kb on + strand, within EX31_RS23670at 498.609 kb on + strand, within EX31_RS23670at 498.609 kb on + strand, within EX31_RS23670at 498.609 kb on + strand, within EX31_RS23670at 498.609 kb on + strand, within EX31_RS23670at 498.609 kb on + strand, within EX31_RS23670at 498.609 kb on + strand, within EX31_RS23670at 498.609 kb on + strand, within EX31_RS23670at 498.610 kb on - strand, within EX31_RS23670at 498.722 kb on + strand, within EX31_RS23670at 498.722 kb on + strand, within EX31_RS23670at 498.723 kb on - strand, within EX31_RS23670at 498.723 kb on - strand, within EX31_RS23670at 498.723 kb on - strand, within EX31_RS23670at 498.814 kb on + strand, within EX31_RS23670at 498.815 kb on - strand, within EX31_RS23670at 498.931 kb on + strand, within EX31_RS23670at 498.932 kb on - strand, within EX31_RS23670at 498.932 kb on - strand, within EX31_RS23670at 499.119 kb on + strand, within EX31_RS23670at 499.119 kb on + strand, within EX31_RS23670at 499.119 kb on + strand, within EX31_RS23670at 499.120 kb on - strand, within EX31_RS23670at 499.120 kb on - strand, within EX31_RS23670at 499.120 kb on - strand, within EX31_RS23670at 499.120 kb on - strand, within EX31_RS23670at 499.120 kb on - strand, within EX31_RS23670at 499.161 kb on - strand, within EX31_RS23670at 499.173 kb on + strand, within EX31_RS23670at 499.183 kb on + strandat 499.183 kb on + strandat 499.183 kb on + strandat 499.183 kb on + strandat 499.241 kb on - strandat 499.241 kb on - strandat 499.243 kb on + strandat 499.243 kb on + strandat 499.243 kb on + strandat 499.243 kb on + strandat 499.243 kb on + strandat 499.329 kb on + strandat 499.363 kb on - strandat 499.408 kb on - strandat 499.408 kb on - strandat 499.408 kb on - strandat 499.426 kb on + strandat 499.427 kb on - strandat 499.427 kb on - strandat 499.437 kb on + strandat 499.437 kb on + strandat 499.438 kb on - strandat 499.480 kb on + strandat 499.493 kb on - strand, within EX31_RS23675at 499.516 kb on + strand, within EX31_RS23675at 499.571 kb on + strand, within EX31_RS23675at 499.594 kb on - strand, within EX31_RS23675at 499.650 kb on - strand, within EX31_RS23675at 499.650 kb on - strand, within EX31_RS23675at 499.686 kb on + strand, within EX31_RS23675at 499.686 kb on + strand, within EX31_RS23675at 499.687 kb on - strand, within EX31_RS23675at 499.708 kb on - strand, within EX31_RS23675at 499.718 kb on - strand, within EX31_RS23675at 499.718 kb on - strand, within EX31_RS23675at 499.721 kb on + strand, within EX31_RS23675at 499.722 kb on - strand, within EX31_RS23675at 499.722 kb on - strand, within EX31_RS23675at 499.752 kb on + strand, within EX31_RS23675at 499.753 kb on - strand, within EX31_RS23675at 499.775 kb on + strand, within EX31_RS23675at 499.775 kb on + strand, within EX31_RS23675at 499.776 kb on - strand, within EX31_RS23675at 499.776 kb on - strand, within EX31_RS23675at 499.786 kb on + strand, within EX31_RS23675at 499.787 kb on - strand, within EX31_RS23675at 499.787 kb on - strand, within EX31_RS23675at 499.900 kb on + strand, within EX31_RS23675at 499.924 kb on + strand, within EX31_RS23675at 499.925 kb on - strand, within EX31_RS23675at 499.925 kb on - strand, within EX31_RS23675at 499.925 kb on - strand, within EX31_RS23675at 499.940 kb on - strand, within EX31_RS23675at 500.036 kb on - strand, within EX31_RS23675at 500.218 kb on + strandat 500.218 kb on + strandat 500.218 kb on + strandat 500.218 kb on + strandat 500.218 kb on + strandat 500.219 kb on - strandat 500.219 kb on - strandat 500.219 kb on - strandat 500.219 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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497,594 - EX31_RS23665 0.36 +0.6
497,594 - EX31_RS23665 0.36 +0.7
497,594 - EX31_RS23665 0.36 +0.9
497,748 - EX31_RS23665 0.51 +0.1
497,843 + EX31_RS23665 0.60 -0.9
497,868 + EX31_RS23665 0.62 +0.4
497,868 + EX31_RS23665 0.62 -0.0
497,868 + EX31_RS23665 0.62 +0.7
497,948 - EX31_RS23665 0.70 -0.3
497,948 - EX31_RS23665 0.70 -0.2
498,042 + EX31_RS23665 0.79 +0.8
498,043 - EX31_RS23665 0.79 -0.1
498,043 - EX31_RS23665 0.79 +0.4
498,070 + EX31_RS23665 0.82 -0.3
498,071 - EX31_RS23665 0.82 +0.6
498,071 - EX31_RS23665 0.82 +0.3
498,089 + EX31_RS23665 0.83 +1.0
498,089 + EX31_RS23665 0.83 -0.8
498,089 + EX31_RS23665 0.83 +0.5
498,090 - EX31_RS23665 0.84 +1.1
498,090 - EX31_RS23665 0.84 -1.3
498,090 - EX31_RS23665 0.84 +0.0
498,128 + EX31_RS23665 0.87 +0.4
498,128 + EX31_RS23665 0.87 +0.6
498,138 + EX31_RS23665 0.88 +0.2
498,138 + EX31_RS23665 0.88 -0.1
498,139 - EX31_RS23665 0.88 -0.3
498,139 - EX31_RS23665 0.88 +0.2
498,139 - EX31_RS23665 0.88 -0.6
498,260 + +1.0
498,260 + +0.1
498,260 + +0.3
498,261 - -1.1
498,285 - -0.4
498,305 + -1.5
498,306 - +0.4
498,306 - +0.2
498,306 - -0.2
498,306 - -0.2
498,306 - +0.4
498,316 - +1.4
498,319 + +0.9
498,319 + -1.1
498,319 + -0.8
498,319 + -0.2
498,320 - -0.6
498,321 + +0.6
498,321 + +0.4
498,322 - -0.3
498,322 - -1.4
498,329 + +0.2
498,354 + -0.3
498,354 + +0.7
498,413 + +0.6
498,414 - -0.1
498,459 + -0.0
498,469 - +1.2
498,496 - -1.2
498,507 + +0.3
498,508 - +1.2
498,510 + +0.5
498,517 - -2.1
498,517 - -0.8
498,517 - +0.2
498,530 + +0.6
498,530 + +0.5
498,530 + +0.2
498,537 + -0.4
498,609 + EX31_RS23670 0.11 -0.8
498,609 + EX31_RS23670 0.11 +1.4
498,609 + EX31_RS23670 0.11 +0.6
498,609 + EX31_RS23670 0.11 +0.9
498,609 + EX31_RS23670 0.11 +0.5
498,609 + EX31_RS23670 0.11 +0.5
498,609 + EX31_RS23670 0.11 +0.5
498,609 + EX31_RS23670 0.11 +0.2
498,610 - EX31_RS23670 0.11 +0.1
498,722 + EX31_RS23670 0.27 +0.6
498,722 + EX31_RS23670 0.27 -0.0
498,723 - EX31_RS23670 0.27 +0.2
498,723 - EX31_RS23670 0.27 +1.3
498,723 - EX31_RS23670 0.27 +0.4
498,814 + EX31_RS23670 0.39 +0.0
498,815 - EX31_RS23670 0.40 -0.7
498,931 + EX31_RS23670 0.56 +0.2
498,932 - EX31_RS23670 0.56 -0.0
498,932 - EX31_RS23670 0.56 -0.4
499,119 + EX31_RS23670 0.82 +0.9
499,119 + EX31_RS23670 0.82 +0.3
499,119 + EX31_RS23670 0.82 +0.5
499,120 - EX31_RS23670 0.82 -0.5
499,120 - EX31_RS23670 0.82 -1.5
499,120 - EX31_RS23670 0.82 +1.8
499,120 - EX31_RS23670 0.82 -0.0
499,120 - EX31_RS23670 0.82 -0.0
499,161 - EX31_RS23670 0.88 -1.7
499,173 + EX31_RS23670 0.90 +0.8
499,183 + +0.6
499,183 + -0.3
499,183 + -0.3
499,183 + -1.1
499,241 - -0.7
499,241 - -0.2
499,243 + -0.9
499,243 + -0.0
499,243 + +0.1
499,243 + +1.2
499,243 + -0.0
499,329 + -0.1
499,363 - -0.2
499,408 - +0.5
499,408 - +0.9
499,408 - -0.7
499,426 + -0.6
499,427 - -0.0
499,427 - -0.4
499,437 + -0.6
499,437 + +0.7
499,438 - -0.1
499,480 + -0.3
499,493 - EX31_RS23675 0.11 +0.7
499,516 + EX31_RS23675 0.14 +1.3
499,571 + EX31_RS23675 0.21 +0.3
499,594 - EX31_RS23675 0.24 -1.0
499,650 - EX31_RS23675 0.31 -0.1
499,650 - EX31_RS23675 0.31 -0.1
499,686 + EX31_RS23675 0.36 -0.2
499,686 + EX31_RS23675 0.36 -0.9
499,687 - EX31_RS23675 0.36 -0.9
499,708 - EX31_RS23675 0.39 +0.8
499,718 - EX31_RS23675 0.40 -2.2
499,718 - EX31_RS23675 0.40 +0.8
499,721 + EX31_RS23675 0.40 +0.1
499,722 - EX31_RS23675 0.41 -0.2
499,722 - EX31_RS23675 0.41 -0.9
499,752 + EX31_RS23675 0.44 +1.5
499,753 - EX31_RS23675 0.44 +0.3
499,775 + EX31_RS23675 0.47 -1.2
499,775 + EX31_RS23675 0.47 +0.6
499,776 - EX31_RS23675 0.47 +0.9
499,776 - EX31_RS23675 0.47 -0.5
499,786 + EX31_RS23675 0.49 +0.2
499,787 - EX31_RS23675 0.49 +0.3
499,787 - EX31_RS23675 0.49 -0.3
499,900 + EX31_RS23675 0.63 +1.5
499,924 + EX31_RS23675 0.66 +0.6
499,925 - EX31_RS23675 0.67 -2.3
499,925 - EX31_RS23675 0.67 +0.6
499,925 - EX31_RS23675 0.67 -0.4
499,940 - EX31_RS23675 0.68 +0.6
500,036 - EX31_RS23675 0.81 -0.4
500,218 + +0.3
500,218 + -0.8
500,218 + +0.2
500,218 + +1.0
500,218 + +0.4
500,219 - -0.4
500,219 - +0.2
500,219 - -0.2
500,219 - +0.1

Or see this region's nucleotide sequence