Strain Fitness in Rahnella sp. WP5 around EX31_RS19915

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS19910 and EX31_RS19915 are separated by 10 nucleotidesEX31_RS19915 and EX31_RS19920 are separated by 44 nucleotides EX31_RS19910: EX31_RS19910 - NADH dehydrogenase, at 610,772 to 612,676 _RS19910 EX31_RS19915: EX31_RS19915 - respiratory chain complex I subunit 1 family protein, at 612,687 to 613,640 _RS19915 EX31_RS19920: EX31_RS19920 - hydrogenase large subunit, at 613,685 to 615,409 _RS19920 Position (kb) 612 613 614Strain fitness (log2 ratio) -2 -1 0 1 2at 611.687 kb on + strand, within EX31_RS19910at 611.825 kb on - strand, within EX31_RS19910at 611.875 kb on + strand, within EX31_RS19910at 611.876 kb on - strand, within EX31_RS19910at 611.876 kb on - strand, within EX31_RS19910at 612.002 kb on + strand, within EX31_RS19910at 612.003 kb on - strand, within EX31_RS19910at 612.041 kb on - strand, within EX31_RS19910at 612.109 kb on + strand, within EX31_RS19910at 612.109 kb on + strand, within EX31_RS19910at 612.110 kb on - strand, within EX31_RS19910at 612.110 kb on - strand, within EX31_RS19910at 612.110 kb on - strand, within EX31_RS19910at 612.207 kb on + strand, within EX31_RS19910at 612.207 kb on + strand, within EX31_RS19910at 612.208 kb on - strand, within EX31_RS19910at 612.208 kb on - strand, within EX31_RS19910at 612.208 kb on - strand, within EX31_RS19910at 612.418 kb on - strand, within EX31_RS19910at 612.686 kb on + strandat 612.686 kb on + strandat 612.790 kb on + strand, within EX31_RS19915at 612.791 kb on - strand, within EX31_RS19915at 612.841 kb on - strand, within EX31_RS19915at 612.841 kb on - strand, within EX31_RS19915at 612.848 kb on + strand, within EX31_RS19915at 612.849 kb on - strand, within EX31_RS19915at 612.849 kb on - strand, within EX31_RS19915at 612.919 kb on - strand, within EX31_RS19915at 612.938 kb on - strand, within EX31_RS19915at 613.017 kb on + strand, within EX31_RS19915at 613.017 kb on + strand, within EX31_RS19915at 613.017 kb on + strand, within EX31_RS19915at 613.018 kb on - strand, within EX31_RS19915at 613.018 kb on - strand, within EX31_RS19915at 613.018 kb on - strand, within EX31_RS19915at 613.018 kb on - strand, within EX31_RS19915at 613.018 kb on - strand, within EX31_RS19915at 613.031 kb on - strand, within EX31_RS19915at 613.231 kb on + strand, within EX31_RS19915at 613.272 kb on + strand, within EX31_RS19915at 613.272 kb on + strand, within EX31_RS19915at 613.272 kb on + strand, within EX31_RS19915at 613.272 kb on + strand, within EX31_RS19915at 613.272 kb on + strand, within EX31_RS19915at 613.272 kb on + strand, within EX31_RS19915at 613.272 kb on + strand, within EX31_RS19915at 613.272 kb on + strand, within EX31_RS19915at 613.272 kb on + strand, within EX31_RS19915at 613.272 kb on + strand, within EX31_RS19915at 613.272 kb on + strand, within EX31_RS19915at 613.272 kb on + strand, within EX31_RS19915at 613.272 kb on + strand, within EX31_RS19915at 613.273 kb on - strand, within EX31_RS19915at 613.273 kb on - strand, within EX31_RS19915at 613.273 kb on - strand, within EX31_RS19915at 613.273 kb on - strand, within EX31_RS19915at 613.273 kb on - strand, within EX31_RS19915at 613.273 kb on - strand, within EX31_RS19915at 613.273 kb on - strand, within EX31_RS19915at 613.273 kb on - strand, within EX31_RS19915at 613.273 kb on - strand, within EX31_RS19915at 613.273 kb on - strand, within EX31_RS19915at 613.273 kb on - strand, within EX31_RS19915at 613.324 kb on + strand, within EX31_RS19915at 613.324 kb on + strand, within EX31_RS19915at 613.324 kb on + strand, within EX31_RS19915at 613.414 kb on + strand, within EX31_RS19915at 613.414 kb on + strand, within EX31_RS19915at 613.415 kb on - strand, within EX31_RS19915at 613.415 kb on - strand, within EX31_RS19915at 613.415 kb on - strand, within EX31_RS19915at 613.517 kb on - strand, within EX31_RS19915at 613.565 kb on + strandat 613.683 kb on + strandat 613.683 kb on + strandat 613.684 kb on - strandat 613.684 kb on - strandat 613.684 kb on - strandat 613.684 kb on - strandat 613.707 kb on + strandat 613.707 kb on + strandat 613.708 kb on - strandat 613.708 kb on - strandat 613.708 kb on - strandat 613.727 kb on - strandat 613.733 kb on + strandat 613.734 kb on - strandat 613.773 kb on + strandat 613.853 kb on + strandat 613.853 kb on + strandat 613.853 kb on + strandat 613.853 kb on + strandat 613.853 kb on + strandat 613.853 kb on + strandat 613.854 kb on - strandat 613.854 kb on - strandat 613.854 kb on - strandat 613.857 kb on - strandat 613.884 kb on + strand, within EX31_RS19920at 613.903 kb on + strand, within EX31_RS19920at 613.903 kb on + strand, within EX31_RS19920at 613.903 kb on + strand, within EX31_RS19920at 613.903 kb on + strand, within EX31_RS19920at 613.903 kb on + strand, within EX31_RS19920at 613.903 kb on + strand, within EX31_RS19920at 613.903 kb on + strand, within EX31_RS19920at 613.903 kb on + strand, within EX31_RS19920at 613.904 kb on - strand, within EX31_RS19920at 613.904 kb on - strand, within EX31_RS19920at 613.904 kb on - strand, within EX31_RS19920at 613.904 kb on - strand, within EX31_RS19920at 613.904 kb on - strand, within EX31_RS19920at 613.904 kb on - strand, within EX31_RS19920at 613.919 kb on + strand, within EX31_RS19920at 613.919 kb on + strand, within EX31_RS19920at 613.919 kb on + strand, within EX31_RS19920at 613.920 kb on - strand, within EX31_RS19920at 613.920 kb on - strand, within EX31_RS19920at 613.928 kb on + strand, within EX31_RS19920at 613.928 kb on + strand, within EX31_RS19920at 613.928 kb on + strand, within EX31_RS19920at 613.929 kb on - strand, within EX31_RS19920at 613.931 kb on + strand, within EX31_RS19920at 613.931 kb on + strand, within EX31_RS19920at 613.931 kb on + strand, within EX31_RS19920at 613.931 kb on + strand, within EX31_RS19920at 613.932 kb on - strand, within EX31_RS19920at 613.932 kb on - strand, within EX31_RS19920at 613.932 kb on - strand, within EX31_RS19920at 613.932 kb on - strand, within EX31_RS19920at 613.932 kb on - strand, within EX31_RS19920at 614.065 kb on + strand, within EX31_RS19920at 614.065 kb on + strand, within EX31_RS19920at 614.065 kb on + strand, within EX31_RS19920at 614.065 kb on + strand, within EX31_RS19920at 614.065 kb on + strand, within EX31_RS19920at 614.065 kb on + strand, within EX31_RS19920at 614.065 kb on + strand, within EX31_RS19920at 614.066 kb on - strand, within EX31_RS19920at 614.066 kb on - strand, within EX31_RS19920at 614.066 kb on - strand, within EX31_RS19920at 614.066 kb on - strand, within EX31_RS19920at 614.066 kb on - strand, within EX31_RS19920at 614.069 kb on + strand, within EX31_RS19920at 614.069 kb on + strand, within EX31_RS19920at 614.069 kb on + strand, within EX31_RS19920at 614.070 kb on - strand, within EX31_RS19920at 614.070 kb on - strand, within EX31_RS19920at 614.070 kb on - strand, within EX31_RS19920at 614.070 kb on - strand, within EX31_RS19920at 614.070 kb on - strand, within EX31_RS19920at 614.139 kb on + strand, within EX31_RS19920at 614.139 kb on + strand, within EX31_RS19920at 614.139 kb on + strand, within EX31_RS19920at 614.139 kb on + strand, within EX31_RS19920at 614.140 kb on - strand, within EX31_RS19920at 614.168 kb on + strand, within EX31_RS19920at 614.207 kb on + strand, within EX31_RS19920at 614.215 kb on + strand, within EX31_RS19920at 614.215 kb on + strand, within EX31_RS19920at 614.345 kb on + strand, within EX31_RS19920at 614.346 kb on - strand, within EX31_RS19920at 614.391 kb on - strand, within EX31_RS19920at 614.456 kb on + strand, within EX31_RS19920at 614.457 kb on - strand, within EX31_RS19920at 614.457 kb on - strand, within EX31_RS19920at 614.457 kb on - strand, within EX31_RS19920at 614.457 kb on - strand, within EX31_RS19920at 614.457 kb on - strand, within EX31_RS19920at 614.457 kb on - strand, within EX31_RS19920at 614.521 kb on + strand, within EX31_RS19920at 614.521 kb on + strand, within EX31_RS19920at 614.522 kb on - strand, within EX31_RS19920

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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611,687 + EX31_RS19910 0.48 -0.3
611,825 - EX31_RS19910 0.55 +1.0
611,875 + EX31_RS19910 0.58 -0.1
611,876 - EX31_RS19910 0.58 +0.1
611,876 - EX31_RS19910 0.58 +0.3
612,002 + EX31_RS19910 0.65 -0.0
612,003 - EX31_RS19910 0.65 +0.3
612,041 - EX31_RS19910 0.67 +0.4
612,109 + EX31_RS19910 0.70 +0.3
612,109 + EX31_RS19910 0.70 -0.3
612,110 - EX31_RS19910 0.70 +0.6
612,110 - EX31_RS19910 0.70 -0.1
612,110 - EX31_RS19910 0.70 -1.6
612,207 + EX31_RS19910 0.75 +1.0
612,207 + EX31_RS19910 0.75 -0.4
612,208 - EX31_RS19910 0.75 -0.4
612,208 - EX31_RS19910 0.75 -0.4
612,208 - EX31_RS19910 0.75 -0.6
612,418 - EX31_RS19910 0.86 -0.4
612,686 + -0.6
612,686 + +0.1
612,790 + EX31_RS19915 0.11 +0.5
612,791 - EX31_RS19915 0.11 -1.2
612,841 - EX31_RS19915 0.16 +0.3
612,841 - EX31_RS19915 0.16 -0.4
612,848 + EX31_RS19915 0.17 -0.2
612,849 - EX31_RS19915 0.17 +0.5
612,849 - EX31_RS19915 0.17 -0.9
612,919 - EX31_RS19915 0.24 -0.1
612,938 - EX31_RS19915 0.26 -0.8
613,017 + EX31_RS19915 0.35 -0.4
613,017 + EX31_RS19915 0.35 -0.0
613,017 + EX31_RS19915 0.35 +0.2
613,018 - EX31_RS19915 0.35 +0.0
613,018 - EX31_RS19915 0.35 +0.4
613,018 - EX31_RS19915 0.35 -1.1
613,018 - EX31_RS19915 0.35 +1.2
613,018 - EX31_RS19915 0.35 +1.9
613,031 - EX31_RS19915 0.36 +0.3
613,231 + EX31_RS19915 0.57 -0.5
613,272 + EX31_RS19915 0.61 -0.3
613,272 + EX31_RS19915 0.61 +0.1
613,272 + EX31_RS19915 0.61 +0.2
613,272 + EX31_RS19915 0.61 +0.5
613,272 + EX31_RS19915 0.61 +0.7
613,272 + EX31_RS19915 0.61 +0.9
613,272 + EX31_RS19915 0.61 +0.4
613,272 + EX31_RS19915 0.61 -0.2
613,272 + EX31_RS19915 0.61 +0.1
613,272 + EX31_RS19915 0.61 +0.6
613,272 + EX31_RS19915 0.61 +1.0
613,272 + EX31_RS19915 0.61 -0.3
613,272 + EX31_RS19915 0.61 +0.6
613,273 - EX31_RS19915 0.61 +0.2
613,273 - EX31_RS19915 0.61 +0.2
613,273 - EX31_RS19915 0.61 +0.1
613,273 - EX31_RS19915 0.61 -0.2
613,273 - EX31_RS19915 0.61 +0.0
613,273 - EX31_RS19915 0.61 +0.3
613,273 - EX31_RS19915 0.61 -0.2
613,273 - EX31_RS19915 0.61 +0.2
613,273 - EX31_RS19915 0.61 -0.8
613,273 - EX31_RS19915 0.61 +0.0
613,273 - EX31_RS19915 0.61 +0.2
613,324 + EX31_RS19915 0.67 +0.3
613,324 + EX31_RS19915 0.67 -0.1
613,324 + EX31_RS19915 0.67 -1.0
613,414 + EX31_RS19915 0.76 +0.2
613,414 + EX31_RS19915 0.76 -0.4
613,415 - EX31_RS19915 0.76 +0.0
613,415 - EX31_RS19915 0.76 +0.3
613,415 - EX31_RS19915 0.76 +0.1
613,517 - EX31_RS19915 0.87 +0.1
613,565 + +0.2
613,683 + +0.3
613,683 + +0.7
613,684 - +1.0
613,684 - -0.4
613,684 - +1.4
613,684 - -0.3
613,707 + -0.2
613,707 + -1.0
613,708 - -1.5
613,708 - -0.1
613,708 - +0.3
613,727 - +0.0
613,733 + -0.2
613,734 - -0.4
613,773 + +1.2
613,853 + +0.5
613,853 + -1.4
613,853 + +0.2
613,853 + +1.0
613,853 + -0.7
613,853 + -0.3
613,854 - -0.9
613,854 - -0.2
613,854 - -1.6
613,857 - +0.6
613,884 + EX31_RS19920 0.12 -0.0
613,903 + EX31_RS19920 0.13 +1.2
613,903 + EX31_RS19920 0.13 -0.3
613,903 + EX31_RS19920 0.13 +0.4
613,903 + EX31_RS19920 0.13 +0.4
613,903 + EX31_RS19920 0.13 -1.8
613,903 + EX31_RS19920 0.13 -2.7
613,903 + EX31_RS19920 0.13 +0.4
613,903 + EX31_RS19920 0.13 -0.2
613,904 - EX31_RS19920 0.13 -1.6
613,904 - EX31_RS19920 0.13 -0.6
613,904 - EX31_RS19920 0.13 -2.4
613,904 - EX31_RS19920 0.13 -0.5
613,904 - EX31_RS19920 0.13 -1.4
613,904 - EX31_RS19920 0.13 -0.3
613,919 + EX31_RS19920 0.14 -1.2
613,919 + EX31_RS19920 0.14 -0.3
613,919 + EX31_RS19920 0.14 -0.6
613,920 - EX31_RS19920 0.14 -0.4
613,920 - EX31_RS19920 0.14 +1.1
613,928 + EX31_RS19920 0.14 -0.9
613,928 + EX31_RS19920 0.14 +0.1
613,928 + EX31_RS19920 0.14 +0.2
613,929 - EX31_RS19920 0.14 +0.6
613,931 + EX31_RS19920 0.14 -0.3
613,931 + EX31_RS19920 0.14 +0.4
613,931 + EX31_RS19920 0.14 -0.3
613,931 + EX31_RS19920 0.14 -0.2
613,932 - EX31_RS19920 0.14 -0.7
613,932 - EX31_RS19920 0.14 +0.3
613,932 - EX31_RS19920 0.14 +0.2
613,932 - EX31_RS19920 0.14 -0.8
613,932 - EX31_RS19920 0.14 +1.4
614,065 + EX31_RS19920 0.22 -0.2
614,065 + EX31_RS19920 0.22 -0.4
614,065 + EX31_RS19920 0.22 +0.5
614,065 + EX31_RS19920 0.22 +1.3
614,065 + EX31_RS19920 0.22 -0.2
614,065 + EX31_RS19920 0.22 -0.9
614,065 + EX31_RS19920 0.22 +0.7
614,066 - EX31_RS19920 0.22 -1.9
614,066 - EX31_RS19920 0.22 -0.6
614,066 - EX31_RS19920 0.22 -0.0
614,066 - EX31_RS19920 0.22 -0.8
614,066 - EX31_RS19920 0.22 +1.1
614,069 + EX31_RS19920 0.22 +0.7
614,069 + EX31_RS19920 0.22 +0.5
614,069 + EX31_RS19920 0.22 +0.0
614,070 - EX31_RS19920 0.22 -0.5
614,070 - EX31_RS19920 0.22 +1.5
614,070 - EX31_RS19920 0.22 +0.2
614,070 - EX31_RS19920 0.22 -0.2
614,070 - EX31_RS19920 0.22 -2.1
614,139 + EX31_RS19920 0.26 -0.8
614,139 + EX31_RS19920 0.26 -0.3
614,139 + EX31_RS19920 0.26 -0.6
614,139 + EX31_RS19920 0.26 +0.5
614,140 - EX31_RS19920 0.26 -0.6
614,168 + EX31_RS19920 0.28 +0.2
614,207 + EX31_RS19920 0.30 -0.1
614,215 + EX31_RS19920 0.31 +1.0
614,215 + EX31_RS19920 0.31 -0.2
614,345 + EX31_RS19920 0.38 -0.7
614,346 - EX31_RS19920 0.38 -0.2
614,391 - EX31_RS19920 0.41 -0.6
614,456 + EX31_RS19920 0.45 -0.9
614,457 - EX31_RS19920 0.45 +0.3
614,457 - EX31_RS19920 0.45 +0.7
614,457 - EX31_RS19920 0.45 -0.3
614,457 - EX31_RS19920 0.45 +1.1
614,457 - EX31_RS19920 0.45 -0.1
614,457 - EX31_RS19920 0.45 +0.1
614,521 + EX31_RS19920 0.48 -0.3
614,521 + EX31_RS19920 0.48 +0.1
614,522 - EX31_RS19920 0.49 +0.1

Or see this region's nucleotide sequence