Experiment: NLN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS16650 and EX31_RS16655 are separated by 47 nucleotides EX31_RS16655 and EX31_RS16660 are separated by 205 nucleotides EX31_RS16660 and EX31_RS16665 overlap by 4 nucleotides EX31_RS16665 and EX31_RS16670 are separated by 60 nucleotides
EX31_RS16650: EX31_RS16650 - sodium:proton antiporter, at 12,736 to 14,523
_RS16650
EX31_RS16655: EX31_RS16655 - hypothetical protein, at 14,571 to 15,002
_RS16655
EX31_RS16660: EX31_RS16660 - TetR/AcrR family transcriptional regulator, at 15,208 to 15,795
_RS16660
EX31_RS16665: EX31_RS16665 - EamA family transporter, at 15,792 to 16,718
_RS16665
EX31_RS16670: EX31_RS16670 - NAD(P)-dependent alcohol dehydrogenase, at 16,779 to 17,837
_RS16670
Position (kb) 15
16 Strain fitness (log2 ratio) -1
0
1 at 14.472 kb on + strand at 14.688 kb on + strand, within EX31_RS16655 at 14.689 kb on - strand, within EX31_RS16655 at 14.776 kb on + strand, within EX31_RS16655 at 15.027 kb on + strand at 15.028 kb on - strand at 15.150 kb on + strand at 15.277 kb on + strand, within EX31_RS16660 at 15.349 kb on + strand, within EX31_RS16660 at 15.388 kb on + strand, within EX31_RS16660 at 15.388 kb on + strand, within EX31_RS16660 at 15.388 kb on + strand, within EX31_RS16660 at 15.388 kb on + strand, within EX31_RS16660 at 15.388 kb on + strand, within EX31_RS16660 at 15.388 kb on + strand, within EX31_RS16660 at 15.388 kb on + strand, within EX31_RS16660 at 15.388 kb on + strand, within EX31_RS16660 at 15.389 kb on - strand, within EX31_RS16660 at 15.398 kb on + strand, within EX31_RS16660 at 15.398 kb on + strand, within EX31_RS16660 at 15.398 kb on + strand, within EX31_RS16660 at 15.398 kb on + strand, within EX31_RS16660 at 15.398 kb on + strand, within EX31_RS16660 at 15.487 kb on + strand, within EX31_RS16660 at 15.511 kb on + strand, within EX31_RS16660 at 15.539 kb on + strand, within EX31_RS16660 at 15.600 kb on + strand, within EX31_RS16660 at 16.013 kb on - strand, within EX31_RS16665 at 16.016 kb on + strand, within EX31_RS16665 at 16.056 kb on + strand, within EX31_RS16665 at 16.057 kb on - strand, within EX31_RS16665 at 16.141 kb on - strand, within EX31_RS16665 at 16.141 kb on - strand, within EX31_RS16665 at 16.213 kb on + strand, within EX31_RS16665 at 16.214 kb on - strand, within EX31_RS16665 at 16.317 kb on + strand, within EX31_RS16665 at 16.339 kb on + strand, within EX31_RS16665 at 16.339 kb on + strand, within EX31_RS16665 at 16.339 kb on + strand, within EX31_RS16665 at 16.340 kb on - strand, within EX31_RS16665 at 16.340 kb on - strand, within EX31_RS16665 at 16.473 kb on + strand, within EX31_RS16665 at 16.473 kb on + strand, within EX31_RS16665 at 16.474 kb on - strand, within EX31_RS16665
Per-strain Table
Position Strand Gene LocusTag Fraction NLN remove 14,472 + -0.0 14,688 + EX31_RS16655 0.27 -0.6 14,689 - EX31_RS16655 0.27 +0.6 14,776 + EX31_RS16655 0.47 -0.8 15,027 + +0.9 15,028 - +0.0 15,150 + -1.3 15,277 + EX31_RS16660 0.12 +1.6 15,349 + EX31_RS16660 0.24 -1.3 15,388 + EX31_RS16660 0.31 -0.2 15,388 + EX31_RS16660 0.31 +0.2 15,388 + EX31_RS16660 0.31 +0.7 15,388 + EX31_RS16660 0.31 +1.1 15,388 + EX31_RS16660 0.31 +0.8 15,388 + EX31_RS16660 0.31 +0.1 15,388 + EX31_RS16660 0.31 +0.5 15,388 + EX31_RS16660 0.31 +0.4 15,389 - EX31_RS16660 0.31 +0.6 15,398 + EX31_RS16660 0.32 +0.1 15,398 + EX31_RS16660 0.32 +1.3 15,398 + EX31_RS16660 0.32 +0.5 15,398 + EX31_RS16660 0.32 -0.3 15,398 + EX31_RS16660 0.32 +1.0 15,487 + EX31_RS16660 0.47 +0.2 15,511 + EX31_RS16660 0.52 +1.0 15,539 + EX31_RS16660 0.56 +0.8 15,600 + EX31_RS16660 0.67 +0.1 16,013 - EX31_RS16665 0.24 +0.6 16,016 + EX31_RS16665 0.24 +0.8 16,056 + EX31_RS16665 0.28 +0.7 16,057 - EX31_RS16665 0.29 -0.4 16,141 - EX31_RS16665 0.38 -0.4 16,141 - EX31_RS16665 0.38 +0.4 16,213 + EX31_RS16665 0.45 -1.0 16,214 - EX31_RS16665 0.46 +0.9 16,317 + EX31_RS16665 0.57 +0.3 16,339 + EX31_RS16665 0.59 +1.7 16,339 + EX31_RS16665 0.59 -0.1 16,339 + EX31_RS16665 0.59 -0.2 16,340 - EX31_RS16665 0.59 +1.1 16,340 - EX31_RS16665 0.59 +0.0 16,473 + EX31_RS16665 0.73 +1.0 16,473 + EX31_RS16665 0.73 +1.1 16,474 - EX31_RS16665 0.74 -0.2
Or see this region's nucleotide sequence