Experiment: NLN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS12755 and EX31_RS12760 are separated by 26 nucleotides EX31_RS12760 and EX31_RS12765 overlap by 1 nucleotides EX31_RS12765 and EX31_RS12770 overlap by 7 nucleotides
EX31_RS12755: EX31_RS12755 - proteasome-type protease, at 224,638 to 225,369
_RS12755
EX31_RS12760: EX31_RS12760 - transglutaminase family protein, at 225,396 to 226,190
_RS12760
EX31_RS12765: EX31_RS12765 - alpha-E domain-containing protein, at 226,190 to 227,131
_RS12765
EX31_RS12770: EX31_RS12770 - circularly permuted type 2 ATP-grasp protein, at 227,125 to 228,576
_RS12770
Position (kb) 226
227
228 Strain fitness (log2 ratio) -2
-1
0
1 at 225.192 kb on + strand, within EX31_RS12755 at 225.192 kb on + strand, within EX31_RS12755 at 225.273 kb on + strand, within EX31_RS12755 at 225.288 kb on + strand, within EX31_RS12755 at 225.289 kb on - strand, within EX31_RS12755 at 225.362 kb on + strand at 225.362 kb on + strand at 225.362 kb on + strand at 225.362 kb on + strand at 225.362 kb on + strand at 225.362 kb on + strand at 225.362 kb on + strand at 225.362 kb on + strand at 225.362 kb on + strand at 225.362 kb on + strand at 225.363 kb on - strand at 225.363 kb on - strand at 225.363 kb on - strand at 225.363 kb on - strand at 225.363 kb on - strand at 225.363 kb on - strand at 225.363 kb on - strand at 225.363 kb on - strand at 225.363 kb on - strand at 225.387 kb on + strand at 225.387 kb on + strand at 225.387 kb on + strand at 225.414 kb on + strand at 225.415 kb on - strand at 225.493 kb on + strand, within EX31_RS12760 at 225.493 kb on + strand, within EX31_RS12760 at 225.493 kb on + strand, within EX31_RS12760 at 225.494 kb on - strand, within EX31_RS12760 at 225.494 kb on - strand, within EX31_RS12760 at 225.494 kb on - strand, within EX31_RS12760 at 225.494 kb on - strand, within EX31_RS12760 at 225.498 kb on + strand, within EX31_RS12760 at 225.498 kb on + strand, within EX31_RS12760 at 225.498 kb on + strand, within EX31_RS12760 at 225.498 kb on + strand, within EX31_RS12760 at 225.498 kb on + strand, within EX31_RS12760 at 225.498 kb on + strand, within EX31_RS12760 at 225.498 kb on + strand, within EX31_RS12760 at 225.499 kb on - strand, within EX31_RS12760 at 225.499 kb on - strand, within EX31_RS12760 at 225.534 kb on - strand, within EX31_RS12760 at 225.543 kb on - strand, within EX31_RS12760 at 225.543 kb on - strand, within EX31_RS12760 at 225.647 kb on - strand, within EX31_RS12760 at 225.708 kb on + strand, within EX31_RS12760 at 225.709 kb on - strand, within EX31_RS12760 at 225.772 kb on + strand, within EX31_RS12760 at 225.772 kb on + strand, within EX31_RS12760 at 225.772 kb on + strand, within EX31_RS12760 at 225.772 kb on + strand, within EX31_RS12760 at 225.773 kb on - strand, within EX31_RS12760 at 225.773 kb on - strand, within EX31_RS12760 at 225.841 kb on + strand, within EX31_RS12760 at 225.929 kb on + strand, within EX31_RS12760 at 225.929 kb on + strand, within EX31_RS12760 at 225.941 kb on + strand, within EX31_RS12760 at 226.124 kb on - strand at 226.153 kb on + strand at 226.153 kb on + strand at 226.153 kb on + strand at 226.153 kb on + strand at 226.153 kb on + strand at 226.154 kb on - strand at 226.154 kb on - strand at 226.159 kb on + strand at 226.159 kb on + strand at 226.159 kb on + strand at 226.159 kb on + strand at 226.159 kb on + strand at 226.159 kb on + strand at 226.159 kb on + strand at 226.160 kb on - strand at 226.160 kb on - strand at 226.160 kb on - strand at 226.160 kb on - strand at 226.191 kb on + strand at 226.192 kb on - strand at 226.206 kb on + strand at 226.206 kb on + strand at 226.207 kb on - strand at 226.207 kb on - strand at 226.327 kb on + strand, within EX31_RS12765 at 226.327 kb on + strand, within EX31_RS12765 at 226.346 kb on + strand, within EX31_RS12765 at 226.347 kb on - strand, within EX31_RS12765 at 226.347 kb on - strand, within EX31_RS12765 at 226.436 kb on + strand, within EX31_RS12765 at 226.437 kb on - strand, within EX31_RS12765 at 226.453 kb on + strand, within EX31_RS12765 at 226.465 kb on + strand, within EX31_RS12765 at 226.477 kb on + strand, within EX31_RS12765 at 226.477 kb on + strand, within EX31_RS12765 at 226.477 kb on + strand, within EX31_RS12765 at 226.477 kb on + strand, within EX31_RS12765 at 226.477 kb on + strand, within EX31_RS12765 at 226.477 kb on + strand, within EX31_RS12765 at 226.478 kb on - strand, within EX31_RS12765 at 226.478 kb on - strand, within EX31_RS12765 at 226.479 kb on + strand, within EX31_RS12765 at 226.480 kb on - strand, within EX31_RS12765 at 226.539 kb on + strand, within EX31_RS12765 at 226.571 kb on + strand, within EX31_RS12765 at 226.664 kb on + strand, within EX31_RS12765 at 226.664 kb on + strand, within EX31_RS12765 at 226.664 kb on + strand, within EX31_RS12765 at 226.665 kb on - strand, within EX31_RS12765 at 226.775 kb on + strand, within EX31_RS12765 at 226.915 kb on + strand, within EX31_RS12765 at 227.041 kb on + strand at 227.041 kb on + strand at 227.041 kb on + strand at 227.041 kb on + strand at 227.042 kb on - strand at 227.042 kb on - strand at 227.042 kb on - strand at 227.042 kb on - strand at 227.042 kb on - strand at 227.103 kb on + strand at 227.126 kb on + strand at 227.169 kb on + strand at 227.170 kb on - strand at 227.170 kb on - strand at 227.236 kb on + strand at 227.366 kb on + strand, within EX31_RS12770 at 227.367 kb on - strand, within EX31_RS12770 at 227.367 kb on - strand, within EX31_RS12770 at 227.547 kb on + strand, within EX31_RS12770 at 227.573 kb on + strand, within EX31_RS12770 at 227.573 kb on + strand, within EX31_RS12770 at 227.574 kb on - strand, within EX31_RS12770 at 227.574 kb on - strand, within EX31_RS12770 at 227.574 kb on - strand, within EX31_RS12770 at 227.574 kb on - strand, within EX31_RS12770 at 227.574 kb on - strand, within EX31_RS12770 at 227.574 kb on - strand, within EX31_RS12770 at 227.577 kb on - strand, within EX31_RS12770 at 227.577 kb on - strand, within EX31_RS12770 at 227.593 kb on + strand, within EX31_RS12770 at 227.594 kb on - strand, within EX31_RS12770 at 227.594 kb on - strand, within EX31_RS12770 at 227.594 kb on - strand, within EX31_RS12770 at 227.597 kb on + strand, within EX31_RS12770 at 227.597 kb on + strand, within EX31_RS12770 at 227.598 kb on - strand, within EX31_RS12770 at 227.598 kb on - strand, within EX31_RS12770 at 227.598 kb on - strand, within EX31_RS12770 at 227.598 kb on - strand, within EX31_RS12770 at 227.598 kb on - strand, within EX31_RS12770 at 227.598 kb on - strand, within EX31_RS12770 at 227.614 kb on - strand, within EX31_RS12770 at 227.614 kb on - strand, within EX31_RS12770 at 227.614 kb on - strand, within EX31_RS12770 at 227.745 kb on + strand, within EX31_RS12770 at 227.746 kb on - strand, within EX31_RS12770 at 227.753 kb on + strand, within EX31_RS12770 at 227.753 kb on + strand, within EX31_RS12770 at 227.754 kb on - strand, within EX31_RS12770 at 227.833 kb on + strand, within EX31_RS12770 at 227.833 kb on + strand, within EX31_RS12770 at 227.833 kb on + strand, within EX31_RS12770 at 227.833 kb on + strand, within EX31_RS12770 at 227.879 kb on + strand, within EX31_RS12770 at 227.890 kb on - strand, within EX31_RS12770 at 227.960 kb on - strand, within EX31_RS12770 at 227.960 kb on - strand, within EX31_RS12770 at 228.017 kb on + strand, within EX31_RS12770 at 228.019 kb on + strand, within EX31_RS12770 at 228.019 kb on + strand, within EX31_RS12770 at 228.020 kb on - strand, within EX31_RS12770 at 228.020 kb on - strand, within EX31_RS12770 at 228.020 kb on - strand, within EX31_RS12770 at 228.053 kb on + strand, within EX31_RS12770 at 228.053 kb on + strand, within EX31_RS12770 at 228.053 kb on + strand, within EX31_RS12770 at 228.053 kb on + strand, within EX31_RS12770 at 228.053 kb on + strand, within EX31_RS12770 at 228.053 kb on + strand, within EX31_RS12770 at 228.053 kb on + strand, within EX31_RS12770 at 228.053 kb on + strand, within EX31_RS12770 at 228.053 kb on + strand, within EX31_RS12770 at 228.053 kb on + strand, within EX31_RS12770 at 228.053 kb on + strand, within EX31_RS12770 at 228.053 kb on + strand, within EX31_RS12770 at 228.053 kb on + strand, within EX31_RS12770 at 228.053 kb on + strand, within EX31_RS12770 at 228.053 kb on + strand, within EX31_RS12770 at 228.053 kb on + strand, within EX31_RS12770 at 228.053 kb on + strand, within EX31_RS12770 at 228.053 kb on + strand, within EX31_RS12770 at 228.053 kb on + strand, within EX31_RS12770 at 228.053 kb on + strand, within EX31_RS12770 at 228.054 kb on - strand, within EX31_RS12770 at 228.054 kb on - strand, within EX31_RS12770 at 228.054 kb on - strand, within EX31_RS12770 at 228.054 kb on - strand, within EX31_RS12770 at 228.054 kb on - strand, within EX31_RS12770 at 228.054 kb on - strand, within EX31_RS12770 at 228.054 kb on - strand, within EX31_RS12770 at 228.054 kb on - strand, within EX31_RS12770 at 228.054 kb on - strand, within EX31_RS12770 at 228.091 kb on + strand, within EX31_RS12770 at 228.092 kb on - strand, within EX31_RS12770 at 228.095 kb on + strand, within EX31_RS12770 at 228.095 kb on + strand, within EX31_RS12770 at 228.095 kb on + strand, within EX31_RS12770 at 228.095 kb on + strand, within EX31_RS12770 at 228.095 kb on + strand, within EX31_RS12770 at 228.096 kb on - strand, within EX31_RS12770 at 228.096 kb on - strand, within EX31_RS12770 at 228.096 kb on - strand, within EX31_RS12770 at 228.096 kb on - strand, within EX31_RS12770 at 228.099 kb on - strand, within EX31_RS12770 at 228.099 kb on - strand, within EX31_RS12770
Per-strain Table
Position Strand Gene LocusTag Fraction NLN remove 225,192 + EX31_RS12755 0.76 -1.1 225,192 + EX31_RS12755 0.76 +0.6 225,273 + EX31_RS12755 0.87 -1.2 225,288 + EX31_RS12755 0.89 +0.0 225,289 - EX31_RS12755 0.89 -0.4 225,362 + +0.3 225,362 + -0.6 225,362 + +0.3 225,362 + +0.3 225,362 + +0.5 225,362 + -0.5 225,362 + +0.9 225,362 + -0.3 225,362 + +0.6 225,362 + +0.3 225,363 - -0.1 225,363 - -0.5 225,363 - -0.6 225,363 - +0.3 225,363 - -0.8 225,363 - +1.5 225,363 - +0.8 225,363 - +0.7 225,363 - -0.6 225,387 + -0.3 225,387 + +0.1 225,387 + +0.1 225,414 + +0.5 225,415 - -1.0 225,493 + EX31_RS12760 0.12 +0.2 225,493 + EX31_RS12760 0.12 -0.0 225,493 + EX31_RS12760 0.12 -0.2 225,494 - EX31_RS12760 0.12 +0.3 225,494 - EX31_RS12760 0.12 +0.4 225,494 - EX31_RS12760 0.12 +1.0 225,494 - EX31_RS12760 0.12 -0.0 225,498 + EX31_RS12760 0.13 -0.1 225,498 + EX31_RS12760 0.13 +0.5 225,498 + EX31_RS12760 0.13 -0.1 225,498 + EX31_RS12760 0.13 +0.0 225,498 + EX31_RS12760 0.13 -0.3 225,498 + EX31_RS12760 0.13 -0.1 225,498 + EX31_RS12760 0.13 +0.2 225,499 - EX31_RS12760 0.13 +0.0 225,499 - EX31_RS12760 0.13 +0.4 225,534 - EX31_RS12760 0.17 +0.2 225,543 - EX31_RS12760 0.18 +0.2 225,543 - EX31_RS12760 0.18 -0.7 225,647 - EX31_RS12760 0.32 -0.6 225,708 + EX31_RS12760 0.39 +0.8 225,709 - EX31_RS12760 0.39 +0.8 225,772 + EX31_RS12760 0.47 +0.2 225,772 + EX31_RS12760 0.47 +0.2 225,772 + EX31_RS12760 0.47 +0.8 225,772 + EX31_RS12760 0.47 -0.8 225,773 - EX31_RS12760 0.47 -0.3 225,773 - EX31_RS12760 0.47 +0.7 225,841 + EX31_RS12760 0.56 +0.0 225,929 + EX31_RS12760 0.67 -0.8 225,929 + EX31_RS12760 0.67 +0.1 225,941 + EX31_RS12760 0.69 +0.2 226,124 - -0.7 226,153 + -0.3 226,153 + +0.5 226,153 + +0.1 226,153 + +1.6 226,153 + -0.4 226,154 - -1.0 226,154 - +0.2 226,159 + +0.6 226,159 + -0.7 226,159 + +0.4 226,159 + -0.5 226,159 + -0.1 226,159 + +0.5 226,159 + +0.6 226,160 - +0.8 226,160 - +0.3 226,160 - -1.1 226,160 - -0.9 226,191 + -0.1 226,192 - +0.4 226,206 + +0.2 226,206 + +0.3 226,207 - -0.0 226,207 - +1.3 226,327 + EX31_RS12765 0.15 +0.7 226,327 + EX31_RS12765 0.15 -0.7 226,346 + EX31_RS12765 0.17 -0.3 226,347 - EX31_RS12765 0.17 +0.9 226,347 - EX31_RS12765 0.17 +0.2 226,436 + EX31_RS12765 0.26 +1.7 226,437 - EX31_RS12765 0.26 +0.9 226,453 + EX31_RS12765 0.28 -0.0 226,465 + EX31_RS12765 0.29 +0.2 226,477 + EX31_RS12765 0.30 +0.5 226,477 + EX31_RS12765 0.30 -0.6 226,477 + EX31_RS12765 0.30 +0.6 226,477 + EX31_RS12765 0.30 -0.5 226,477 + EX31_RS12765 0.30 +1.2 226,477 + EX31_RS12765 0.30 +0.6 226,478 - EX31_RS12765 0.31 -0.1 226,478 - EX31_RS12765 0.31 -0.1 226,479 + EX31_RS12765 0.31 -0.3 226,480 - EX31_RS12765 0.31 +0.2 226,539 + EX31_RS12765 0.37 +0.1 226,571 + EX31_RS12765 0.40 +0.5 226,664 + EX31_RS12765 0.50 +0.4 226,664 + EX31_RS12765 0.50 +0.6 226,664 + EX31_RS12765 0.50 -0.7 226,665 - EX31_RS12765 0.50 +0.2 226,775 + EX31_RS12765 0.62 +0.7 226,915 + EX31_RS12765 0.77 +0.8 227,041 + +0.3 227,041 + -0.1 227,041 + -1.1 227,041 + +0.2 227,042 - +0.3 227,042 - +0.3 227,042 - -0.4 227,042 - +0.0 227,042 - +0.7 227,103 + +0.1 227,126 + -0.7 227,169 + -0.5 227,170 - +0.3 227,170 - +0.1 227,236 + -0.3 227,366 + EX31_RS12770 0.17 -0.4 227,367 - EX31_RS12770 0.17 -0.1 227,367 - EX31_RS12770 0.17 +0.9 227,547 + EX31_RS12770 0.29 +0.1 227,573 + EX31_RS12770 0.31 -0.2 227,573 + EX31_RS12770 0.31 +0.4 227,574 - EX31_RS12770 0.31 -0.1 227,574 - EX31_RS12770 0.31 +0.5 227,574 - EX31_RS12770 0.31 +0.3 227,574 - EX31_RS12770 0.31 -0.2 227,574 - EX31_RS12770 0.31 +0.1 227,574 - EX31_RS12770 0.31 -0.5 227,577 - EX31_RS12770 0.31 +0.9 227,577 - EX31_RS12770 0.31 -2.0 227,593 + EX31_RS12770 0.32 -0.8 227,594 - EX31_RS12770 0.32 +0.3 227,594 - EX31_RS12770 0.32 -0.5 227,594 - EX31_RS12770 0.32 +0.0 227,597 + EX31_RS12770 0.33 -0.0 227,597 + EX31_RS12770 0.33 +0.8 227,598 - EX31_RS12770 0.33 -0.2 227,598 - EX31_RS12770 0.33 +0.6 227,598 - EX31_RS12770 0.33 +0.0 227,598 - EX31_RS12770 0.33 -0.2 227,598 - EX31_RS12770 0.33 -0.0 227,598 - EX31_RS12770 0.33 -1.0 227,614 - EX31_RS12770 0.34 -0.1 227,614 - EX31_RS12770 0.34 -0.1 227,614 - EX31_RS12770 0.34 -0.2 227,745 + EX31_RS12770 0.43 -0.1 227,746 - EX31_RS12770 0.43 -0.3 227,753 + EX31_RS12770 0.43 -0.1 227,753 + EX31_RS12770 0.43 -1.0 227,754 - EX31_RS12770 0.43 +0.3 227,833 + EX31_RS12770 0.49 -1.1 227,833 + EX31_RS12770 0.49 +0.3 227,833 + EX31_RS12770 0.49 -0.5 227,833 + EX31_RS12770 0.49 -0.4 227,879 + EX31_RS12770 0.52 +0.2 227,890 - EX31_RS12770 0.53 +0.3 227,960 - EX31_RS12770 0.58 +0.8 227,960 - EX31_RS12770 0.58 +1.1 228,017 + EX31_RS12770 0.61 +0.4 228,019 + EX31_RS12770 0.62 -0.7 228,019 + EX31_RS12770 0.62 +0.4 228,020 - EX31_RS12770 0.62 +0.4 228,020 - EX31_RS12770 0.62 -1.3 228,020 - EX31_RS12770 0.62 -0.1 228,053 + EX31_RS12770 0.64 -1.3 228,053 + EX31_RS12770 0.64 +0.2 228,053 + EX31_RS12770 0.64 -0.1 228,053 + EX31_RS12770 0.64 -0.4 228,053 + EX31_RS12770 0.64 +0.4 228,053 + EX31_RS12770 0.64 -0.3 228,053 + EX31_RS12770 0.64 +0.3 228,053 + EX31_RS12770 0.64 +1.0 228,053 + EX31_RS12770 0.64 -0.2 228,053 + EX31_RS12770 0.64 +0.7 228,053 + EX31_RS12770 0.64 -0.0 228,053 + EX31_RS12770 0.64 +0.2 228,053 + EX31_RS12770 0.64 +0.2 228,053 + EX31_RS12770 0.64 -0.5 228,053 + EX31_RS12770 0.64 -0.1 228,053 + EX31_RS12770 0.64 -0.4 228,053 + EX31_RS12770 0.64 -0.3 228,053 + EX31_RS12770 0.64 -0.7 228,053 + EX31_RS12770 0.64 -0.4 228,053 + EX31_RS12770 0.64 -0.0 228,054 - EX31_RS12770 0.64 -0.1 228,054 - EX31_RS12770 0.64 +0.2 228,054 - EX31_RS12770 0.64 -0.0 228,054 - EX31_RS12770 0.64 -0.1 228,054 - EX31_RS12770 0.64 -0.2 228,054 - EX31_RS12770 0.64 -1.7 228,054 - EX31_RS12770 0.64 -0.0 228,054 - EX31_RS12770 0.64 +0.2 228,054 - EX31_RS12770 0.64 +0.0 228,091 + EX31_RS12770 0.67 -0.0 228,092 - EX31_RS12770 0.67 -1.5 228,095 + EX31_RS12770 0.67 +0.0 228,095 + EX31_RS12770 0.67 +0.4 228,095 + EX31_RS12770 0.67 +0.4 228,095 + EX31_RS12770 0.67 +0.3 228,095 + EX31_RS12770 0.67 +0.7 228,096 - EX31_RS12770 0.67 -0.1 228,096 - EX31_RS12770 0.67 +0.6 228,096 - EX31_RS12770 0.67 +0.2 228,096 - EX31_RS12770 0.67 +0.4 228,099 - EX31_RS12770 0.67 -0.5 228,099 - EX31_RS12770 0.67 +0.1
Or see this region's nucleotide sequence