Strain Fitness in Rahnella sp. WP5 around EX31_RS11205

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS11200 and EX31_RS11205 are separated by 448 nucleotidesEX31_RS11205 and EX31_RS11210 are separated by 192 nucleotides EX31_RS11200: EX31_RS11200 - alpha/beta fold hydrolase, at 172,102 to 172,884 _RS11200 EX31_RS11205: EX31_RS11205 - chemotaxis protein CheV, at 173,333 to 174,304 _RS11205 EX31_RS11210: EX31_RS11210 - oxidoreductase, at 174,497 to 175,474 _RS11210 Position (kb) 173 174 175Strain fitness (log2 ratio) -2 -1 0 1 2at 172.335 kb on - strand, within EX31_RS11200at 172.335 kb on - strand, within EX31_RS11200at 172.335 kb on - strand, within EX31_RS11200at 172.387 kb on - strand, within EX31_RS11200at 172.475 kb on - strand, within EX31_RS11200at 172.475 kb on - strand, within EX31_RS11200at 172.475 kb on - strand, within EX31_RS11200at 172.530 kb on + strand, within EX31_RS11200at 172.619 kb on + strand, within EX31_RS11200at 172.620 kb on - strand, within EX31_RS11200at 172.620 kb on - strand, within EX31_RS11200at 172.886 kb on + strandat 172.886 kb on + strandat 172.887 kb on - strandat 172.897 kb on - strandat 172.938 kb on - strandat 172.964 kb on - strandat 172.964 kb on - strandat 172.965 kb on + strandat 172.965 kb on + strandat 172.966 kb on - strandat 172.966 kb on - strandat 172.966 kb on - strandat 172.966 kb on - strandat 172.966 kb on - strandat 172.991 kb on - strandat 173.002 kb on - strandat 173.025 kb on - strandat 173.025 kb on - strandat 173.059 kb on + strandat 173.079 kb on - strandat 173.079 kb on - strandat 173.099 kb on - strandat 173.102 kb on - strandat 173.131 kb on + strandat 173.175 kb on + strandat 173.312 kb on - strandat 173.335 kb on - strandat 173.431 kb on + strand, within EX31_RS11205at 173.432 kb on - strand, within EX31_RS11205at 173.530 kb on + strand, within EX31_RS11205at 173.564 kb on + strand, within EX31_RS11205at 173.565 kb on - strand, within EX31_RS11205at 173.786 kb on - strand, within EX31_RS11205at 173.797 kb on + strand, within EX31_RS11205at 173.798 kb on - strand, within EX31_RS11205at 173.798 kb on - strand, within EX31_RS11205at 173.891 kb on - strand, within EX31_RS11205at 174.305 kb on - strandat 174.325 kb on + strandat 174.340 kb on - strandat 174.340 kb on - strandat 174.352 kb on + strandat 174.352 kb on + strandat 174.352 kb on + strandat 174.352 kb on + strandat 174.353 kb on - strandat 174.353 kb on - strandat 174.353 kb on - strandat 174.353 kb on - strandat 174.353 kb on - strandat 174.353 kb on - strandat 174.353 kb on - strandat 174.408 kb on + strandat 174.408 kb on + strandat 174.409 kb on - strandat 174.436 kb on - strandat 174.622 kb on + strand, within EX31_RS11210at 174.911 kb on - strand, within EX31_RS11210at 174.918 kb on + strand, within EX31_RS11210at 174.919 kb on - strand, within EX31_RS11210at 174.928 kb on + strand, within EX31_RS11210at 174.928 kb on + strand, within EX31_RS11210at 174.928 kb on + strand, within EX31_RS11210at 174.929 kb on - strand, within EX31_RS11210at 174.929 kb on - strand, within EX31_RS11210at 174.959 kb on - strand, within EX31_RS11210at 174.959 kb on - strand, within EX31_RS11210at 174.970 kb on + strand, within EX31_RS11210at 174.970 kb on + strand, within EX31_RS11210at 174.971 kb on - strand, within EX31_RS11210at 174.971 kb on - strand, within EX31_RS11210at 174.971 kb on - strand, within EX31_RS11210at 174.971 kb on - strand, within EX31_RS11210at 174.971 kb on - strand, within EX31_RS11210at 174.971 kb on - strand, within EX31_RS11210at 174.971 kb on - strand, within EX31_RS11210at 174.992 kb on - strand, within EX31_RS11210

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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172,335 - EX31_RS11200 0.30 +0.1
172,335 - EX31_RS11200 0.30 -0.5
172,335 - EX31_RS11200 0.30 +1.2
172,387 - EX31_RS11200 0.36 -0.1
172,475 - EX31_RS11200 0.48 -0.5
172,475 - EX31_RS11200 0.48 +0.9
172,475 - EX31_RS11200 0.48 -0.8
172,530 + EX31_RS11200 0.55 +0.6
172,619 + EX31_RS11200 0.66 +0.6
172,620 - EX31_RS11200 0.66 -0.5
172,620 - EX31_RS11200 0.66 +0.5
172,886 + -1.3
172,886 + -0.4
172,887 - +0.1
172,897 - +0.2
172,938 - +1.1
172,964 - -2.7
172,964 - -1.4
172,965 + -0.1
172,965 + +0.7
172,966 - -0.1
172,966 - +1.0
172,966 - -0.4
172,966 - -0.5
172,966 - +1.4
172,991 - -0.2
173,002 - +0.6
173,025 - -0.4
173,025 - +0.1
173,059 + -1.7
173,079 - -0.1
173,079 - -1.4
173,099 - -1.8
173,102 - +0.9
173,131 + +0.2
173,175 + +0.3
173,312 - -0.8
173,335 - -0.2
173,431 + EX31_RS11205 0.10 +0.8
173,432 - EX31_RS11205 0.10 +0.1
173,530 + EX31_RS11205 0.20 -0.6
173,564 + EX31_RS11205 0.24 -2.4
173,565 - EX31_RS11205 0.24 -0.2
173,786 - EX31_RS11205 0.47 -0.7
173,797 + EX31_RS11205 0.48 +0.2
173,798 - EX31_RS11205 0.48 +0.0
173,798 - EX31_RS11205 0.48 -0.4
173,891 - EX31_RS11205 0.57 -0.3
174,305 - -0.7
174,325 + +0.5
174,340 - +1.4
174,340 - -0.4
174,352 + +0.6
174,352 + +0.5
174,352 + -0.6
174,352 + -2.7
174,353 - -0.4
174,353 - +0.3
174,353 - +2.0
174,353 - -0.3
174,353 - +0.1
174,353 - -0.0
174,353 - -0.3
174,408 + +0.4
174,408 + +0.9
174,409 - +1.1
174,436 - +0.1
174,622 + EX31_RS11210 0.13 +0.8
174,911 - EX31_RS11210 0.42 +0.1
174,918 + EX31_RS11210 0.43 -1.1
174,919 - EX31_RS11210 0.43 +1.1
174,928 + EX31_RS11210 0.44 -1.8
174,928 + EX31_RS11210 0.44 +0.3
174,928 + EX31_RS11210 0.44 +0.6
174,929 - EX31_RS11210 0.44 -0.8
174,929 - EX31_RS11210 0.44 +1.2
174,959 - EX31_RS11210 0.47 -0.1
174,959 - EX31_RS11210 0.47 +0.6
174,970 + EX31_RS11210 0.48 -0.7
174,970 + EX31_RS11210 0.48 -1.4
174,971 - EX31_RS11210 0.48 +0.9
174,971 - EX31_RS11210 0.48 +1.3
174,971 - EX31_RS11210 0.48 +0.6
174,971 - EX31_RS11210 0.48 +0.2
174,971 - EX31_RS11210 0.48 +0.1
174,971 - EX31_RS11210 0.48 +0.2
174,971 - EX31_RS11210 0.48 -0.7
174,992 - EX31_RS11210 0.51 -0.2

Or see this region's nucleotide sequence