Experiment: NLN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS01745 and EX31_RS01750 are separated by 103 nucleotides EX31_RS01750 and EX31_RS01755 are separated by 3 nucleotides EX31_RS01755 and EX31_RS01760 overlap by 1 nucleotides EX31_RS01760 and EX31_RS01765 are separated by 511 nucleotides EX31_RS01765 and EX31_RS01770 are separated by 166 nucleotides
EX31_RS01745: EX31_RS01745 - helix-turn-helix transcriptional regulator, at 378,365 to 379,084
_RS01745
EX31_RS01750: EX31_RS01750 - hexulose-6-phosphate synthase, at 379,188 to 379,430
_RS01750
EX31_RS01755: EX31_RS01755 - type II toxin-antitoxin system HicB family antitoxin, at 379,434 to 379,892
_RS01755
EX31_RS01760: EX31_RS01760 - hypothetical protein, at 379,892 to 380,287
_RS01760
EX31_RS01765: EX31_RS01765 - hypothetical protein, at 380,799 to 381,008
_RS01765
EX31_RS01770: EX31_RS01770 - hypothetical protein, at 381,175 to 381,411
_RS01770
Position (kb) 379
380
381 Strain fitness (log2 ratio) -2
-1
0
1
2 at 379.085 kb on + strand at 379.112 kb on + strand at 379.112 kb on + strand at 379.112 kb on + strand at 379.112 kb on + strand at 379.112 kb on + strand at 379.113 kb on - strand at 379.131 kb on + strand at 379.131 kb on + strand at 379.131 kb on + strand at 379.131 kb on + strand at 379.132 kb on - strand at 379.168 kb on + strand at 379.168 kb on + strand at 379.168 kb on + strand at 379.168 kb on + strand at 379.172 kb on + strand at 379.180 kb on + strand at 379.180 kb on + strand at 379.180 kb on + strand at 379.180 kb on + strand at 379.180 kb on + strand at 379.229 kb on - strand, within EX31_RS01750 at 379.232 kb on + strand, within EX31_RS01750 at 379.258 kb on + strand, within EX31_RS01750 at 379.275 kb on + strand, within EX31_RS01750 at 379.275 kb on + strand, within EX31_RS01750 at 379.275 kb on + strand, within EX31_RS01750 at 379.323 kb on + strand, within EX31_RS01750 at 379.325 kb on + strand, within EX31_RS01750 at 379.340 kb on + strand, within EX31_RS01750 at 379.340 kb on + strand, within EX31_RS01750 at 379.389 kb on + strand, within EX31_RS01750 at 379.389 kb on + strand, within EX31_RS01750 at 379.389 kb on + strand, within EX31_RS01750 at 379.396 kb on + strand, within EX31_RS01750 at 379.396 kb on + strand, within EX31_RS01750 at 379.649 kb on + strand, within EX31_RS01755 at 379.655 kb on + strand, within EX31_RS01755 at 379.692 kb on + strand, within EX31_RS01755 at 379.715 kb on + strand, within EX31_RS01755 at 379.715 kb on + strand, within EX31_RS01755 at 379.715 kb on + strand, within EX31_RS01755 at 379.754 kb on + strand, within EX31_RS01755 at 379.787 kb on + strand, within EX31_RS01755 at 379.789 kb on + strand, within EX31_RS01755 at 379.972 kb on + strand, within EX31_RS01760 at 379.972 kb on + strand, within EX31_RS01760 at 379.972 kb on + strand, within EX31_RS01760 at 380.049 kb on + strand, within EX31_RS01760 at 380.094 kb on + strand, within EX31_RS01760 at 380.104 kb on + strand, within EX31_RS01760 at 380.115 kb on + strand, within EX31_RS01760 at 380.201 kb on + strand, within EX31_RS01760 at 380.205 kb on + strand, within EX31_RS01760 at 380.205 kb on + strand, within EX31_RS01760 at 380.205 kb on + strand, within EX31_RS01760 at 380.205 kb on + strand, within EX31_RS01760 at 380.205 kb on + strand, within EX31_RS01760 at 380.205 kb on + strand, within EX31_RS01760 at 380.205 kb on + strand, within EX31_RS01760 at 380.205 kb on + strand, within EX31_RS01760 at 380.205 kb on + strand, within EX31_RS01760 at 380.205 kb on + strand, within EX31_RS01760 at 380.245 kb on + strand, within EX31_RS01760 at 380.245 kb on + strand, within EX31_RS01760 at 380.326 kb on + strand at 380.326 kb on + strand at 380.326 kb on + strand at 380.326 kb on + strand at 380.327 kb on - strand at 380.327 kb on - strand at 380.327 kb on - strand at 380.341 kb on + strand at 380.379 kb on - strand at 380.505 kb on - strand at 380.553 kb on + strand at 380.564 kb on - strand at 380.569 kb on - strand at 380.573 kb on - strand at 380.573 kb on - strand at 380.588 kb on + strand at 380.608 kb on - strand at 380.622 kb on - strand at 380.623 kb on + strand at 380.624 kb on - strand at 380.737 kb on + strand at 380.738 kb on - strand at 380.792 kb on + strand at 380.792 kb on + strand at 380.792 kb on + strand at 380.793 kb on - strand at 380.821 kb on + strand, within EX31_RS01765 at 380.845 kb on + strand, within EX31_RS01765 at 380.846 kb on - strand, within EX31_RS01765 at 380.876 kb on + strand, within EX31_RS01765 at 380.957 kb on + strand, within EX31_RS01765 at 380.957 kb on + strand, within EX31_RS01765 at 380.957 kb on + strand, within EX31_RS01765 at 380.957 kb on + strand, within EX31_RS01765 at 380.957 kb on + strand, within EX31_RS01765 at 380.957 kb on + strand, within EX31_RS01765 at 380.958 kb on - strand, within EX31_RS01765 at 381.139 kb on + strand at 381.184 kb on + strand at 381.185 kb on - strand at 381.185 kb on - strand at 381.185 kb on - strand at 381.216 kb on + strand, within EX31_RS01770 at 381.217 kb on - strand, within EX31_RS01770 at 381.252 kb on + strand, within EX31_RS01770 at 381.258 kb on + strand, within EX31_RS01770 at 381.258 kb on + strand, within EX31_RS01770 at 381.258 kb on + strand, within EX31_RS01770 at 381.260 kb on + strand, within EX31_RS01770 at 381.261 kb on - strand, within EX31_RS01770 at 381.261 kb on - strand, within EX31_RS01770
Per-strain Table
Position Strand Gene LocusTag Fraction NLN remove 379,085 + +0.7 379,112 + -0.7 379,112 + -0.1 379,112 + +0.1 379,112 + -0.2 379,112 + +0.0 379,113 - +0.5 379,131 + +1.0 379,131 + +0.0 379,131 + +0.1 379,131 + -1.1 379,132 - +0.2 379,168 + +0.2 379,168 + -0.1 379,168 + -0.6 379,168 + -1.1 379,172 + -2.2 379,180 + -0.5 379,180 + +0.6 379,180 + -0.3 379,180 + -0.6 379,180 + +1.6 379,229 - EX31_RS01750 0.17 -1.4 379,232 + EX31_RS01750 0.18 -0.5 379,258 + EX31_RS01750 0.29 +1.0 379,275 + EX31_RS01750 0.36 -0.4 379,275 + EX31_RS01750 0.36 -0.2 379,275 + EX31_RS01750 0.36 +0.0 379,323 + EX31_RS01750 0.56 -0.2 379,325 + EX31_RS01750 0.56 +1.3 379,340 + EX31_RS01750 0.63 +1.1 379,340 + EX31_RS01750 0.63 -0.6 379,389 + EX31_RS01750 0.83 +0.4 379,389 + EX31_RS01750 0.83 -2.0 379,389 + EX31_RS01750 0.83 +0.4 379,396 + EX31_RS01750 0.86 +0.1 379,396 + EX31_RS01750 0.86 +0.8 379,649 + EX31_RS01755 0.47 +0.6 379,655 + EX31_RS01755 0.48 -0.0 379,692 + EX31_RS01755 0.56 +1.1 379,715 + EX31_RS01755 0.61 +0.5 379,715 + EX31_RS01755 0.61 +0.4 379,715 + EX31_RS01755 0.61 +1.0 379,754 + EX31_RS01755 0.70 -0.1 379,787 + EX31_RS01755 0.77 +0.3 379,789 + EX31_RS01755 0.77 +0.3 379,972 + EX31_RS01760 0.20 +0.6 379,972 + EX31_RS01760 0.20 +1.3 379,972 + EX31_RS01760 0.20 +0.8 380,049 + EX31_RS01760 0.40 +0.7 380,094 + EX31_RS01760 0.51 -1.5 380,104 + EX31_RS01760 0.54 -0.2 380,115 + EX31_RS01760 0.56 +1.1 380,201 + EX31_RS01760 0.78 +0.7 380,205 + EX31_RS01760 0.79 +0.2 380,205 + EX31_RS01760 0.79 +1.1 380,205 + EX31_RS01760 0.79 -0.1 380,205 + EX31_RS01760 0.79 +0.9 380,205 + EX31_RS01760 0.79 +0.8 380,205 + EX31_RS01760 0.79 +0.8 380,205 + EX31_RS01760 0.79 +0.4 380,205 + EX31_RS01760 0.79 +0.7 380,205 + EX31_RS01760 0.79 +0.8 380,205 + EX31_RS01760 0.79 +0.4 380,245 + EX31_RS01760 0.89 +0.4 380,245 + EX31_RS01760 0.89 +1.2 380,326 + -0.2 380,326 + -0.9 380,326 + -0.7 380,326 + +1.0 380,327 - +0.6 380,327 - -1.0 380,327 - +0.3 380,341 + +1.5 380,379 - -0.2 380,505 - +0.5 380,553 + -2.1 380,564 - +1.1 380,569 - +1.8 380,573 - -0.8 380,573 - -0.9 380,588 + -0.4 380,608 - +1.0 380,622 - +0.2 380,623 + +0.0 380,624 - -0.6 380,737 + +0.1 380,738 - +2.1 380,792 + +0.0 380,792 + +0.5 380,792 + -0.1 380,793 - -0.3 380,821 + EX31_RS01765 0.10 +0.7 380,845 + EX31_RS01765 0.22 +0.2 380,846 - EX31_RS01765 0.22 +0.8 380,876 + EX31_RS01765 0.37 -0.0 380,957 + EX31_RS01765 0.75 +0.5 380,957 + EX31_RS01765 0.75 +0.5 380,957 + EX31_RS01765 0.75 +0.9 380,957 + EX31_RS01765 0.75 -0.1 380,957 + EX31_RS01765 0.75 +1.0 380,957 + EX31_RS01765 0.75 -0.1 380,958 - EX31_RS01765 0.76 +0.6 381,139 + -0.9 381,184 + -1.2 381,185 - +1.3 381,185 - -0.1 381,185 - +0.6 381,216 + EX31_RS01770 0.17 -0.3 381,217 - EX31_RS01770 0.18 -1.1 381,252 + EX31_RS01770 0.32 +0.3 381,258 + EX31_RS01770 0.35 +0.6 381,258 + EX31_RS01770 0.35 +0.8 381,258 + EX31_RS01770 0.35 +1.5 381,260 + EX31_RS01770 0.36 +0.6 381,261 - EX31_RS01770 0.36 +1.0 381,261 - EX31_RS01770 0.36 -0.1
Or see this region's nucleotide sequence