Strain Fitness in Rahnella sp. WP5 around EX31_RS01450

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS01440 and EX31_RS01445 are separated by 4 nucleotidesEX31_RS01445 and EX31_RS01450 overlap by 32 nucleotidesEX31_RS01450 and EX31_RS01455 are separated by 32 nucleotides EX31_RS01440: EX31_RS01440 - molecular chaperone HscC, at 323,426 to 325,111 _RS01440 EX31_RS01445: EX31_RS01445 - J domain-containing protein, at 325,116 to 325,688 _RS01445 EX31_RS01450: EX31_RS01450 - hypothetical protein, at 325,657 to 327,060 _RS01450 EX31_RS01455: EX31_RS01455 - alpha-amylase, at 327,093 to 328,574 _RS01455 Position (kb) 325 326 327 328Strain fitness (log2 ratio) -2 -1 0 1 2at 324.761 kb on + strand, within EX31_RS01440at 324.761 kb on + strand, within EX31_RS01440at 324.761 kb on + strand, within EX31_RS01440at 324.761 kb on + strand, within EX31_RS01440at 324.869 kb on - strand, within EX31_RS01440at 324.956 kb on + strandat 324.957 kb on - strandat 325.142 kb on - strandat 325.227 kb on + strand, within EX31_RS01445at 325.227 kb on + strand, within EX31_RS01445at 325.228 kb on - strand, within EX31_RS01445at 325.283 kb on + strand, within EX31_RS01445at 325.340 kb on - strand, within EX31_RS01445at 325.478 kb on + strand, within EX31_RS01445at 325.635 kb on - strandat 326.186 kb on + strand, within EX31_RS01450at 326.186 kb on + strand, within EX31_RS01450at 326.186 kb on + strand, within EX31_RS01450at 326.186 kb on + strand, within EX31_RS01450at 326.187 kb on - strand, within EX31_RS01450at 326.204 kb on + strand, within EX31_RS01450at 326.204 kb on + strand, within EX31_RS01450at 326.205 kb on - strand, within EX31_RS01450at 326.207 kb on - strand, within EX31_RS01450at 326.238 kb on + strand, within EX31_RS01450at 326.284 kb on + strand, within EX31_RS01450at 326.284 kb on + strand, within EX31_RS01450at 326.284 kb on + strand, within EX31_RS01450at 326.351 kb on + strand, within EX31_RS01450at 326.351 kb on + strand, within EX31_RS01450at 326.352 kb on - strand, within EX31_RS01450at 326.359 kb on + strand, within EX31_RS01450at 326.359 kb on + strand, within EX31_RS01450at 326.491 kb on + strand, within EX31_RS01450at 326.492 kb on - strand, within EX31_RS01450at 326.492 kb on - strand, within EX31_RS01450at 326.492 kb on - strand, within EX31_RS01450at 326.504 kb on + strand, within EX31_RS01450at 326.513 kb on - strand, within EX31_RS01450at 326.562 kb on - strand, within EX31_RS01450at 326.677 kb on + strand, within EX31_RS01450at 326.677 kb on + strand, within EX31_RS01450at 326.677 kb on + strand, within EX31_RS01450at 326.678 kb on - strand, within EX31_RS01450at 326.678 kb on - strand, within EX31_RS01450at 326.678 kb on - strand, within EX31_RS01450at 326.678 kb on - strand, within EX31_RS01450at 326.678 kb on - strand, within EX31_RS01450at 326.678 kb on - strand, within EX31_RS01450at 326.678 kb on - strand, within EX31_RS01450at 326.727 kb on + strand, within EX31_RS01450at 326.728 kb on - strand, within EX31_RS01450at 326.728 kb on - strand, within EX31_RS01450at 326.775 kb on + strand, within EX31_RS01450at 326.775 kb on + strand, within EX31_RS01450at 326.786 kb on + strand, within EX31_RS01450at 326.786 kb on + strand, within EX31_RS01450at 326.786 kb on + strand, within EX31_RS01450at 326.811 kb on + strand, within EX31_RS01450at 326.829 kb on + strand, within EX31_RS01450at 326.829 kb on + strand, within EX31_RS01450at 326.829 kb on + strand, within EX31_RS01450at 326.829 kb on + strand, within EX31_RS01450at 326.829 kb on + strand, within EX31_RS01450at 326.830 kb on - strand, within EX31_RS01450at 326.851 kb on + strand, within EX31_RS01450at 326.851 kb on + strand, within EX31_RS01450at 326.851 kb on + strand, within EX31_RS01450at 326.852 kb on - strand, within EX31_RS01450at 326.852 kb on - strand, within EX31_RS01450at 326.852 kb on - strand, within EX31_RS01450at 326.858 kb on + strand, within EX31_RS01450at 326.941 kb on - strandat 327.075 kb on - strandat 327.167 kb on + strandat 327.168 kb on - strandat 327.168 kb on - strandat 327.421 kb on + strand, within EX31_RS01455at 327.480 kb on + strand, within EX31_RS01455at 327.481 kb on - strand, within EX31_RS01455at 327.481 kb on - strand, within EX31_RS01455at 327.568 kb on - strand, within EX31_RS01455at 327.746 kb on - strand, within EX31_RS01455at 327.746 kb on - strand, within EX31_RS01455at 327.746 kb on - strand, within EX31_RS01455at 327.778 kb on + strand, within EX31_RS01455at 327.793 kb on + strand, within EX31_RS01455at 327.793 kb on + strand, within EX31_RS01455at 327.794 kb on - strand, within EX31_RS01455at 327.821 kb on + strand, within EX31_RS01455at 327.822 kb on - strand, within EX31_RS01455at 327.923 kb on - strand, within EX31_RS01455at 327.985 kb on + strand, within EX31_RS01455

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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324,761 + EX31_RS01440 0.79 +0.3
324,761 + EX31_RS01440 0.79 +1.0
324,761 + EX31_RS01440 0.79 -0.2
324,761 + EX31_RS01440 0.79 +1.0
324,869 - EX31_RS01440 0.86 -1.2
324,956 + -0.1
324,957 - +1.3
325,142 - -0.2
325,227 + EX31_RS01445 0.19 +0.5
325,227 + EX31_RS01445 0.19 -1.0
325,228 - EX31_RS01445 0.20 -1.6
325,283 + EX31_RS01445 0.29 -0.3
325,340 - EX31_RS01445 0.39 +1.1
325,478 + EX31_RS01445 0.63 -1.2
325,635 - +0.2
326,186 + EX31_RS01450 0.38 +0.2
326,186 + EX31_RS01450 0.38 +0.5
326,186 + EX31_RS01450 0.38 -0.1
326,186 + EX31_RS01450 0.38 -0.3
326,187 - EX31_RS01450 0.38 +0.6
326,204 + EX31_RS01450 0.39 +0.3
326,204 + EX31_RS01450 0.39 +0.1
326,205 - EX31_RS01450 0.39 +1.9
326,207 - EX31_RS01450 0.39 -2.3
326,238 + EX31_RS01450 0.41 -0.9
326,284 + EX31_RS01450 0.45 +1.1
326,284 + EX31_RS01450 0.45 +0.2
326,284 + EX31_RS01450 0.45 +0.2
326,351 + EX31_RS01450 0.49 -0.2
326,351 + EX31_RS01450 0.49 -1.9
326,352 - EX31_RS01450 0.50 -0.9
326,359 + EX31_RS01450 0.50 +0.5
326,359 + EX31_RS01450 0.50 +0.1
326,491 + EX31_RS01450 0.59 -1.0
326,492 - EX31_RS01450 0.59 +0.5
326,492 - EX31_RS01450 0.59 +0.9
326,492 - EX31_RS01450 0.59 -1.5
326,504 + EX31_RS01450 0.60 -1.9
326,513 - EX31_RS01450 0.61 -0.7
326,562 - EX31_RS01450 0.64 +1.1
326,677 + EX31_RS01450 0.73 -1.1
326,677 + EX31_RS01450 0.73 +1.3
326,677 + EX31_RS01450 0.73 -0.5
326,678 - EX31_RS01450 0.73 -0.6
326,678 - EX31_RS01450 0.73 +2.3
326,678 - EX31_RS01450 0.73 +0.3
326,678 - EX31_RS01450 0.73 +0.6
326,678 - EX31_RS01450 0.73 +0.2
326,678 - EX31_RS01450 0.73 +0.8
326,678 - EX31_RS01450 0.73 -0.5
326,727 + EX31_RS01450 0.76 -2.1
326,728 - EX31_RS01450 0.76 +0.1
326,728 - EX31_RS01450 0.76 +0.3
326,775 + EX31_RS01450 0.80 +1.7
326,775 + EX31_RS01450 0.80 +0.3
326,786 + EX31_RS01450 0.80 -0.5
326,786 + EX31_RS01450 0.80 +0.1
326,786 + EX31_RS01450 0.80 -0.4
326,811 + EX31_RS01450 0.82 +0.7
326,829 + EX31_RS01450 0.83 +0.5
326,829 + EX31_RS01450 0.83 +0.3
326,829 + EX31_RS01450 0.83 +1.4
326,829 + EX31_RS01450 0.83 +0.9
326,829 + EX31_RS01450 0.83 -0.2
326,830 - EX31_RS01450 0.84 -0.9
326,851 + EX31_RS01450 0.85 +0.3
326,851 + EX31_RS01450 0.85 +0.9
326,851 + EX31_RS01450 0.85 +1.1
326,852 - EX31_RS01450 0.85 +0.7
326,852 - EX31_RS01450 0.85 +0.7
326,852 - EX31_RS01450 0.85 -0.9
326,858 + EX31_RS01450 0.86 -0.4
326,941 - +0.2
327,075 - -0.2
327,167 + -0.9
327,168 - +0.6
327,168 - -0.0
327,421 + EX31_RS01455 0.22 +0.7
327,480 + EX31_RS01455 0.26 +0.1
327,481 - EX31_RS01455 0.26 -1.1
327,481 - EX31_RS01455 0.26 -1.3
327,568 - EX31_RS01455 0.32 +0.9
327,746 - EX31_RS01455 0.44 -0.3
327,746 - EX31_RS01455 0.44 +2.3
327,746 - EX31_RS01455 0.44 +0.1
327,778 + EX31_RS01455 0.46 -0.3
327,793 + EX31_RS01455 0.47 +0.7
327,793 + EX31_RS01455 0.47 +1.0
327,794 - EX31_RS01455 0.47 -0.0
327,821 + EX31_RS01455 0.49 +0.1
327,822 - EX31_RS01455 0.49 -1.9
327,923 - EX31_RS01455 0.56 +0.0
327,985 + EX31_RS01455 0.60 +0.9

Or see this region's nucleotide sequence