Experiment: MGL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS04280 and EX31_RS25135 are separated by 806 nucleotides EX31_RS25135 and EX31_RS04285 are separated by 49 nucleotides
EX31_RS04280: EX31_RS04280 - alpha/beta hydrolase, at 383,296 to 384,216
_RS04280
EX31_RS25135: EX31_RS25135 - hypothetical protein, at 385,023 to 385,694
_RS25135
EX31_RS04285: EX31_RS04285 - hypothetical protein, at 385,744 to 386,856
_RS04285
Position (kb) 385
386 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 384.087 kb on + strand, within EX31_RS04280 at 384.087 kb on + strand, within EX31_RS04280 at 384.114 kb on + strand, within EX31_RS04280 at 384.115 kb on - strand, within EX31_RS04280 at 384.117 kb on - strand, within EX31_RS04280 at 384.245 kb on - strand at 384.245 kb on - strand at 384.248 kb on + strand at 384.248 kb on + strand at 384.248 kb on + strand at 384.248 kb on + strand at 384.248 kb on + strand at 384.248 kb on + strand at 384.248 kb on + strand at 384.249 kb on - strand at 384.249 kb on - strand at 384.249 kb on - strand at 384.249 kb on - strand at 384.249 kb on - strand at 384.249 kb on - strand at 384.249 kb on - strand at 384.251 kb on + strand at 384.251 kb on + strand at 384.251 kb on + strand at 384.252 kb on - strand at 384.252 kb on - strand at 384.252 kb on - strand at 384.252 kb on - strand at 384.252 kb on - strand at 384.322 kb on - strand at 384.346 kb on + strand at 384.346 kb on + strand at 384.352 kb on - strand at 384.355 kb on + strand at 384.358 kb on + strand at 384.359 kb on - strand at 384.359 kb on - strand at 384.554 kb on - strand at 384.593 kb on - strand at 384.653 kb on + strand at 384.653 kb on + strand at 384.653 kb on + strand at 384.653 kb on + strand at 384.653 kb on + strand at 384.654 kb on - strand at 384.654 kb on - strand at 384.669 kb on - strand at 384.708 kb on + strand at 384.811 kb on - strand at 384.933 kb on + strand at 385.046 kb on + strand at 385.046 kb on + strand at 385.090 kb on + strand at 385.091 kb on - strand, within EX31_RS25135 at 385.119 kb on - strand, within EX31_RS25135 at 385.204 kb on - strand, within EX31_RS25135 at 385.267 kb on - strand, within EX31_RS25135 at 385.332 kb on + strand, within EX31_RS25135 at 385.501 kb on - strand, within EX31_RS25135 at 385.531 kb on - strand, within EX31_RS25135 at 385.558 kb on + strand, within EX31_RS25135 at 385.687 kb on - strand at 385.835 kb on - strand at 385.967 kb on - strand, within EX31_RS04285 at 386.062 kb on - strand, within EX31_RS04285 at 386.080 kb on - strand, within EX31_RS04285 at 386.080 kb on - strand, within EX31_RS04285 at 386.127 kb on + strand, within EX31_RS04285 at 386.128 kb on - strand, within EX31_RS04285 at 386.128 kb on - strand, within EX31_RS04285 at 386.128 kb on - strand, within EX31_RS04285 at 386.128 kb on - strand, within EX31_RS04285 at 386.142 kb on - strand, within EX31_RS04285 at 386.241 kb on + strand, within EX31_RS04285 at 386.284 kb on - strand, within EX31_RS04285 at 386.286 kb on - strand, within EX31_RS04285 at 386.347 kb on - strand, within EX31_RS04285 at 386.365 kb on - strand, within EX31_RS04285 at 386.365 kb on - strand, within EX31_RS04285
Per-strain Table
Position Strand Gene LocusTag Fraction MGL remove 384,087 + EX31_RS04280 0.86 -0.8 384,087 + EX31_RS04280 0.86 -0.1 384,114 + EX31_RS04280 0.89 +0.5 384,115 - EX31_RS04280 0.89 -0.1 384,117 - EX31_RS04280 0.89 -0.1 384,245 - -0.5 384,245 - -0.4 384,248 + -0.7 384,248 + -2.0 384,248 + -2.7 384,248 + -2.1 384,248 + -0.4 384,248 + +0.4 384,248 + -1.7 384,249 - -1.6 384,249 - +0.2 384,249 - -0.2 384,249 - -1.2 384,249 - +0.0 384,249 - -0.6 384,249 - -0.6 384,251 + -1.6 384,251 + -0.9 384,251 + +0.3 384,252 - -1.2 384,252 - +0.0 384,252 - -0.4 384,252 - -0.0 384,252 - -0.3 384,322 - +0.1 384,346 + +0.2 384,346 + +0.9 384,352 - -0.1 384,355 + -1.9 384,358 + +1.4 384,359 - +0.8 384,359 - -0.5 384,554 - -0.4 384,593 - +0.3 384,653 + -0.5 384,653 + +0.6 384,653 + -0.9 384,653 + +0.5 384,653 + -0.9 384,654 - -0.9 384,654 - +0.3 384,669 - -0.3 384,708 + +0.0 384,811 - +0.2 384,933 + +0.1 385,046 + +0.2 385,046 + +0.9 385,090 + +0.2 385,091 - EX31_RS25135 0.10 -0.6 385,119 - EX31_RS25135 0.14 -0.1 385,204 - EX31_RS25135 0.27 -0.2 385,267 - EX31_RS25135 0.36 -0.2 385,332 + EX31_RS25135 0.46 +0.2 385,501 - EX31_RS25135 0.71 -2.4 385,531 - EX31_RS25135 0.76 -2.2 385,558 + EX31_RS25135 0.80 +0.0 385,687 - -0.3 385,835 - +0.2 385,967 - EX31_RS04285 0.20 +0.1 386,062 - EX31_RS04285 0.29 -0.2 386,080 - EX31_RS04285 0.30 -1.2 386,080 - EX31_RS04285 0.30 -1.0 386,127 + EX31_RS04285 0.34 +1.3 386,128 - EX31_RS04285 0.35 -0.2 386,128 - EX31_RS04285 0.35 -0.2 386,128 - EX31_RS04285 0.35 -0.5 386,128 - EX31_RS04285 0.35 -0.3 386,142 - EX31_RS04285 0.36 -0.5 386,241 + EX31_RS04285 0.45 -0.1 386,284 - EX31_RS04285 0.49 -0.7 386,286 - EX31_RS04285 0.49 -3.0 386,347 - EX31_RS04285 0.54 -1.8 386,365 - EX31_RS04285 0.56 -0.1 386,365 - EX31_RS04285 0.56 -0.6
Or see this region's nucleotide sequence