Experiment: MGL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS20600 and EX31_RS20605 are separated by 26 nucleotides EX31_RS20605 and EX31_RS20610 are separated by 419 nucleotides EX31_RS20610 and EX31_RS20615 are separated by 154 nucleotides
EX31_RS20600: EX31_RS20600 - GMC family oxidoreductase, at 759,382 to 760,983
_RS20600
EX31_RS20605: EX31_RS20605 - sorbitol dehydrogenase, at 761,010 to 761,531
_RS20605
EX31_RS20610: EX31_RS20610 - nitrogen regulatory protein P-II, at 761,951 to 762,289
_RS20610
EX31_RS20615: EX31_RS20615 - two-component system response regulator GlrR, at 762,444 to 763,781
_RS20615
Position (kb) 761
762
763 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 761.005 kb on + strand at 761.006 kb on - strand at 761.047 kb on + strand at 761.047 kb on + strand at 761.053 kb on + strand at 761.053 kb on + strand at 761.053 kb on + strand at 761.054 kb on - strand at 761.054 kb on - strand at 761.054 kb on - strand at 761.054 kb on - strand at 761.054 kb on - strand at 761.153 kb on - strand, within EX31_RS20605 at 761.153 kb on - strand, within EX31_RS20605 at 761.301 kb on + strand, within EX31_RS20605 at 761.314 kb on + strand, within EX31_RS20605 at 761.315 kb on - strand, within EX31_RS20605 at 761.315 kb on - strand, within EX31_RS20605 at 761.315 kb on - strand, within EX31_RS20605 at 761.317 kb on + strand, within EX31_RS20605 at 761.318 kb on - strand, within EX31_RS20605 at 761.318 kb on - strand, within EX31_RS20605 at 761.318 kb on - strand, within EX31_RS20605 at 761.422 kb on + strand, within EX31_RS20605 at 761.422 kb on + strand, within EX31_RS20605 at 761.422 kb on + strand, within EX31_RS20605 at 761.423 kb on - strand, within EX31_RS20605 at 761.423 kb on - strand, within EX31_RS20605 at 761.423 kb on - strand, within EX31_RS20605 at 761.444 kb on + strand, within EX31_RS20605 at 761.445 kb on - strand, within EX31_RS20605 at 761.445 kb on - strand, within EX31_RS20605 at 761.485 kb on - strand at 761.508 kb on + strand at 761.509 kb on - strand at 761.509 kb on - strand at 761.620 kb on + strand at 761.626 kb on - strand at 761.687 kb on + strand at 761.715 kb on + strand at 761.897 kb on - strand at 761.929 kb on + strand at 761.929 kb on + strand at 761.930 kb on - strand at 761.930 kb on - strand at 761.930 kb on - strand at 761.930 kb on - strand at 761.930 kb on - strand at 761.930 kb on - strand at 761.933 kb on - strand at 761.952 kb on + strand at 761.987 kb on - strand, within EX31_RS20610 at 762.059 kb on - strand, within EX31_RS20610 at 762.061 kb on + strand, within EX31_RS20610 at 762.062 kb on - strand, within EX31_RS20610 at 762.062 kb on - strand, within EX31_RS20610 at 762.062 kb on - strand, within EX31_RS20610 at 762.062 kb on - strand, within EX31_RS20610 at 762.062 kb on - strand, within EX31_RS20610 at 762.077 kb on - strand, within EX31_RS20610 at 762.138 kb on + strand, within EX31_RS20610 at 762.139 kb on - strand, within EX31_RS20610 at 762.139 kb on - strand, within EX31_RS20610 at 762.139 kb on - strand, within EX31_RS20610 at 762.301 kb on - strand at 762.301 kb on - strand at 762.301 kb on - strand at 762.302 kb on + strand at 762.302 kb on + strand at 762.302 kb on + strand at 762.302 kb on + strand at 762.302 kb on + strand at 762.302 kb on + strand at 762.302 kb on + strand at 762.303 kb on - strand at 762.303 kb on - strand at 762.303 kb on - strand at 762.303 kb on - strand at 762.303 kb on - strand at 762.385 kb on + strand at 762.392 kb on - strand at 762.392 kb on - strand at 762.392 kb on - strand at 762.392 kb on - strand at 762.392 kb on - strand at 762.392 kb on - strand at 762.392 kb on - strand at 762.396 kb on + strand at 762.396 kb on + strand at 762.396 kb on + strand at 762.396 kb on + strand at 762.396 kb on + strand at 762.396 kb on + strand at 762.396 kb on + strand at 762.396 kb on + strand at 762.397 kb on - strand at 762.397 kb on - strand at 762.397 kb on - strand at 762.397 kb on - strand at 762.397 kb on - strand at 762.397 kb on - strand at 762.397 kb on - strand at 762.397 kb on - strand at 762.397 kb on - strand at 762.397 kb on - strand at 762.397 kb on - strand at 762.397 kb on - strand at 762.415 kb on + strand at 762.415 kb on + strand at 762.416 kb on - strand at 762.416 kb on - strand at 762.416 kb on - strand at 762.416 kb on - strand at 762.469 kb on - strand at 762.493 kb on + strand at 762.494 kb on - strand at 762.510 kb on - strand at 762.521 kb on + strand at 762.521 kb on + strand at 762.521 kb on + strand at 762.522 kb on - strand at 762.522 kb on - strand at 762.522 kb on - strand at 762.522 kb on - strand at 762.522 kb on - strand at 762.522 kb on - strand at 762.522 kb on - strand at 762.574 kb on + strand at 762.575 kb on - strand at 762.575 kb on - strand at 762.575 kb on - strand at 762.593 kb on + strand, within EX31_RS20615 at 762.593 kb on + strand, within EX31_RS20615 at 762.593 kb on + strand, within EX31_RS20615 at 762.593 kb on + strand, within EX31_RS20615 at 762.594 kb on - strand, within EX31_RS20615 at 762.594 kb on - strand, within EX31_RS20615 at 762.594 kb on - strand, within EX31_RS20615 at 762.594 kb on - strand, within EX31_RS20615 at 762.712 kb on - strand, within EX31_RS20615 at 762.791 kb on + strand, within EX31_RS20615 at 762.791 kb on + strand, within EX31_RS20615 at 762.792 kb on - strand, within EX31_RS20615 at 762.792 kb on - strand, within EX31_RS20615 at 762.962 kb on + strand, within EX31_RS20615 at 763.205 kb on + strand, within EX31_RS20615 at 763.206 kb on - strand, within EX31_RS20615 at 763.206 kb on - strand, within EX31_RS20615 at 763.214 kb on + strand, within EX31_RS20615
Per-strain Table
Position Strand Gene LocusTag Fraction MGL remove 761,005 + -0.7 761,006 - -0.6 761,047 + -1.3 761,047 + +0.9 761,053 + +0.8 761,053 + -0.0 761,053 + -0.3 761,054 - -0.4 761,054 - -1.0 761,054 - -0.8 761,054 - -0.3 761,054 - -1.9 761,153 - EX31_RS20605 0.27 +0.0 761,153 - EX31_RS20605 0.27 +1.3 761,301 + EX31_RS20605 0.56 -1.5 761,314 + EX31_RS20605 0.58 +0.1 761,315 - EX31_RS20605 0.58 +0.0 761,315 - EX31_RS20605 0.58 -0.3 761,315 - EX31_RS20605 0.58 -1.3 761,317 + EX31_RS20605 0.59 -1.3 761,318 - EX31_RS20605 0.59 -0.1 761,318 - EX31_RS20605 0.59 -0.0 761,318 - EX31_RS20605 0.59 -1.0 761,422 + EX31_RS20605 0.79 +0.2 761,422 + EX31_RS20605 0.79 -0.4 761,422 + EX31_RS20605 0.79 +0.5 761,423 - EX31_RS20605 0.79 -0.6 761,423 - EX31_RS20605 0.79 -0.5 761,423 - EX31_RS20605 0.79 -0.6 761,444 + EX31_RS20605 0.83 -0.1 761,445 - EX31_RS20605 0.83 +0.3 761,445 - EX31_RS20605 0.83 +0.7 761,485 - -0.4 761,508 + -0.3 761,509 - +0.4 761,509 - +0.7 761,620 + -0.6 761,626 - -0.1 761,687 + -0.0 761,715 + +0.2 761,897 - +0.5 761,929 + -0.2 761,929 + -0.3 761,930 - -2.2 761,930 - +0.5 761,930 - +0.5 761,930 - -0.2 761,930 - -0.3 761,930 - +0.9 761,933 - -0.5 761,952 + +1.0 761,987 - EX31_RS20610 0.11 -1.8 762,059 - EX31_RS20610 0.32 -0.5 762,061 + EX31_RS20610 0.32 -1.4 762,062 - EX31_RS20610 0.33 -1.9 762,062 - EX31_RS20610 0.33 -3.2 762,062 - EX31_RS20610 0.33 -0.6 762,062 - EX31_RS20610 0.33 -0.1 762,062 - EX31_RS20610 0.33 -2.5 762,077 - EX31_RS20610 0.37 -0.9 762,138 + EX31_RS20610 0.55 -2.2 762,139 - EX31_RS20610 0.55 -2.9 762,139 - EX31_RS20610 0.55 -0.6 762,139 - EX31_RS20610 0.55 -0.5 762,301 - -0.5 762,301 - +0.4 762,301 - +0.5 762,302 + +0.1 762,302 + -0.5 762,302 + +1.0 762,302 + -1.1 762,302 + -1.1 762,302 + -0.1 762,302 + +0.8 762,303 - +1.0 762,303 - +0.1 762,303 - -2.0 762,303 - +1.3 762,303 - +0.3 762,385 + +1.5 762,392 - -3.1 762,392 - +0.8 762,392 - +0.8 762,392 - -0.5 762,392 - -0.5 762,392 - +0.3 762,392 - -1.1 762,396 + -0.7 762,396 + +0.5 762,396 + -0.0 762,396 + -0.7 762,396 + -0.9 762,396 + +1.4 762,396 + -0.0 762,396 + -0.4 762,397 - +0.6 762,397 - +1.1 762,397 - +0.0 762,397 - -1.1 762,397 - +0.7 762,397 - -1.9 762,397 - +0.4 762,397 - +1.0 762,397 - -0.5 762,397 - +0.1 762,397 - -0.1 762,397 - -0.1 762,415 + +0.6 762,415 + +0.2 762,416 - -1.5 762,416 - +1.6 762,416 - -0.5 762,416 - +0.3 762,469 - -0.3 762,493 + +0.1 762,494 - -2.2 762,510 - -0.9 762,521 + +0.4 762,521 + -3.2 762,521 + +0.4 762,522 - -2.6 762,522 - -0.3 762,522 - +0.7 762,522 - +0.7 762,522 - +0.0 762,522 - -1.3 762,522 - +0.1 762,574 + -2.4 762,575 - -1.2 762,575 - +0.6 762,575 - -1.1 762,593 + EX31_RS20615 0.11 -0.1 762,593 + EX31_RS20615 0.11 -1.1 762,593 + EX31_RS20615 0.11 +0.5 762,593 + EX31_RS20615 0.11 -1.0 762,594 - EX31_RS20615 0.11 -0.5 762,594 - EX31_RS20615 0.11 -0.4 762,594 - EX31_RS20615 0.11 +0.3 762,594 - EX31_RS20615 0.11 +2.5 762,712 - EX31_RS20615 0.20 -0.4 762,791 + EX31_RS20615 0.26 -0.2 762,791 + EX31_RS20615 0.26 +0.4 762,792 - EX31_RS20615 0.26 +0.6 762,792 - EX31_RS20615 0.26 +1.7 762,962 + EX31_RS20615 0.39 +0.6 763,205 + EX31_RS20615 0.57 -1.0 763,206 - EX31_RS20615 0.57 +0.9 763,206 - EX31_RS20615 0.57 +1.2 763,214 + EX31_RS20615 0.58 +0.2
Or see this region's nucleotide sequence