Strain Fitness in Rahnella sp. WP5 around EX31_RS15530

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS15525 and EX31_RS15530 are separated by 140 nucleotidesEX31_RS15530 and EX31_RS15535 overlap by 4 nucleotidesEX31_RS15535 and EX31_RS15540 are separated by 133 nucleotides EX31_RS15525: EX31_RS15525 - nitrogen assimilation transcriptional regulator, at 2,027 to 2,950 _RS15525 EX31_RS15530: EX31_RS15530 - acetyl-CoA carboxylase biotin carboxyl carrier protein subunit, at 3,091 to 3,531 _RS15530 EX31_RS15535: EX31_RS15535 - LamB/YcsF family protein, at 3,528 to 4,310 _RS15535 EX31_RS15540: EX31_RS15540 - SDR family oxidoreductase, at 4,444 to 5,193 _RS15540 Position (kb) 3 4Strain fitness (log2 ratio) -2 -1 0 1at 2.220 kb on - strand, within EX31_RS15525at 2.501 kb on - strand, within EX31_RS15525at 2.501 kb on - strand, within EX31_RS15525at 2.591 kb on + strand, within EX31_RS15525at 2.591 kb on + strand, within EX31_RS15525at 2.591 kb on + strand, within EX31_RS15525at 2.592 kb on - strand, within EX31_RS15525at 2.592 kb on - strand, within EX31_RS15525at 2.839 kb on + strand, within EX31_RS15525at 2.948 kb on + strandat 3.011 kb on - strandat 3.011 kb on - strandat 3.011 kb on - strandat 3.011 kb on - strandat 3.022 kb on - strandat 3.205 kb on + strand, within EX31_RS15530at 3.320 kb on + strand, within EX31_RS15530at 3.534 kb on + strandat 3.534 kb on + strandat 3.576 kb on + strandat 3.700 kb on + strand, within EX31_RS15535at 3.700 kb on + strand, within EX31_RS15535at 3.700 kb on + strand, within EX31_RS15535at 3.700 kb on + strand, within EX31_RS15535at 3.700 kb on + strand, within EX31_RS15535at 3.700 kb on + strand, within EX31_RS15535at 3.786 kb on + strand, within EX31_RS15535at 3.786 kb on + strand, within EX31_RS15535at 3.787 kb on - strand, within EX31_RS15535at 3.787 kb on - strand, within EX31_RS15535at 3.787 kb on - strand, within EX31_RS15535at 3.796 kb on - strand, within EX31_RS15535at 3.879 kb on - strand, within EX31_RS15535at 4.232 kb on + strandat 4.232 kb on + strandat 4.232 kb on + strandat 4.232 kb on + strandat 4.233 kb on - strandat 4.233 kb on - strandat 4.309 kb on - strandat 4.322 kb on - strandat 4.322 kb on - strandat 4.322 kb on - strandat 4.323 kb on + strandat 4.323 kb on + strandat 4.323 kb on + strandat 4.324 kb on - strandat 4.324 kb on - strandat 4.324 kb on - strandat 4.324 kb on - strandat 4.324 kb on - strandat 4.351 kb on + strandat 4.351 kb on + strandat 4.351 kb on + strandat 4.352 kb on - strandat 4.352 kb on - strandat 4.359 kb on - strandat 4.359 kb on - strandat 4.361 kb on - strandat 4.361 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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2,220 - EX31_RS15525 0.21 -2.1
2,501 - EX31_RS15525 0.51 -1.1
2,501 - EX31_RS15525 0.51 +0.9
2,591 + EX31_RS15525 0.61 -0.2
2,591 + EX31_RS15525 0.61 +1.5
2,591 + EX31_RS15525 0.61 -0.0
2,592 - EX31_RS15525 0.61 -0.8
2,592 - EX31_RS15525 0.61 -0.4
2,839 + EX31_RS15525 0.88 +0.5
2,948 + -1.9
3,011 - +1.4
3,011 - -1.4
3,011 - -1.7
3,011 - -0.5
3,022 - -0.4
3,205 + EX31_RS15530 0.26 -0.6
3,320 + EX31_RS15530 0.52 +0.9
3,534 + -0.2
3,534 + -0.1
3,576 + +0.3
3,700 + EX31_RS15535 0.22 -0.1
3,700 + EX31_RS15535 0.22 -0.4
3,700 + EX31_RS15535 0.22 -0.3
3,700 + EX31_RS15535 0.22 -0.6
3,700 + EX31_RS15535 0.22 -0.1
3,700 + EX31_RS15535 0.22 +0.2
3,786 + EX31_RS15535 0.33 -1.2
3,786 + EX31_RS15535 0.33 -2.4
3,787 - EX31_RS15535 0.33 -0.2
3,787 - EX31_RS15535 0.33 -0.6
3,787 - EX31_RS15535 0.33 -0.4
3,796 - EX31_RS15535 0.34 -0.9
3,879 - EX31_RS15535 0.45 -1.8
4,232 + -0.6
4,232 + -1.1
4,232 + +1.4
4,232 + -0.5
4,233 - +0.4
4,233 - +1.4
4,309 - -0.5
4,322 - +0.4
4,322 - +0.9
4,322 - +0.4
4,323 + +1.7
4,323 + -0.3
4,323 + -1.1
4,324 - -0.2
4,324 - -0.9
4,324 - +0.1
4,324 - +0.9
4,324 - -1.7
4,351 + -0.4
4,351 + -0.0
4,351 + +0.1
4,352 - -2.1
4,352 - +0.6
4,359 - +0.1
4,359 - +0.2
4,361 - +0.1
4,361 - +0.1

Or see this region's nucleotide sequence