Strain Fitness in Rahnella sp. WP5 around EX31_RS14435

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS14430 and EX31_RS14435 overlap by 8 nucleotidesEX31_RS14435 and EX31_RS14440 are separated by 120 nucleotides EX31_RS14430: EX31_RS14430 - putative lipopolysaccharide heptosyltransferase III, at 68,425 to 69,507 _RS14430 EX31_RS14435: EX31_RS14435 - glycosyltransferase family 4 protein, at 69,500 to 70,645 _RS14435 EX31_RS14440: EX31_RS14440 - 3-deoxy-D-manno-octulosonic acid transferase, at 70,766 to 72,040 _RS14440 Position (kb) 69 70 71Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 68.502 kb on + strandat 68.502 kb on + strandat 68.502 kb on + strandat 68.502 kb on + strandat 68.502 kb on + strandat 68.502 kb on + strandat 68.502 kb on + strandat 68.502 kb on + strandat 68.503 kb on - strandat 68.503 kb on - strandat 68.503 kb on - strandat 68.503 kb on - strandat 68.575 kb on + strand, within EX31_RS14430at 68.672 kb on + strand, within EX31_RS14430at 68.672 kb on + strand, within EX31_RS14430at 68.673 kb on - strand, within EX31_RS14430at 68.673 kb on - strand, within EX31_RS14430at 68.673 kb on - strand, within EX31_RS14430at 68.683 kb on + strand, within EX31_RS14430at 68.691 kb on - strand, within EX31_RS14430at 68.716 kb on + strand, within EX31_RS14430at 68.716 kb on + strand, within EX31_RS14430at 68.716 kb on + strand, within EX31_RS14430at 68.717 kb on - strand, within EX31_RS14430at 68.717 kb on - strand, within EX31_RS14430at 68.717 kb on - strand, within EX31_RS14430at 68.730 kb on + strand, within EX31_RS14430at 68.772 kb on + strand, within EX31_RS14430at 68.773 kb on - strand, within EX31_RS14430at 68.773 kb on - strand, within EX31_RS14430at 68.803 kb on + strand, within EX31_RS14430at 68.805 kb on + strand, within EX31_RS14430at 68.806 kb on - strand, within EX31_RS14430at 68.841 kb on + strand, within EX31_RS14430at 68.841 kb on + strand, within EX31_RS14430at 68.841 kb on + strand, within EX31_RS14430at 68.842 kb on - strand, within EX31_RS14430at 68.842 kb on - strand, within EX31_RS14430at 68.842 kb on - strand, within EX31_RS14430at 68.842 kb on - strand, within EX31_RS14430at 68.842 kb on - strand, within EX31_RS14430at 68.842 kb on - strand, within EX31_RS14430at 68.849 kb on + strand, within EX31_RS14430at 68.850 kb on - strand, within EX31_RS14430at 68.880 kb on + strand, within EX31_RS14430at 68.895 kb on + strand, within EX31_RS14430at 68.895 kb on + strand, within EX31_RS14430at 68.895 kb on + strand, within EX31_RS14430at 68.895 kb on + strand, within EX31_RS14430at 68.895 kb on + strand, within EX31_RS14430at 68.895 kb on + strand, within EX31_RS14430at 68.895 kb on + strand, within EX31_RS14430at 68.895 kb on + strand, within EX31_RS14430at 68.896 kb on - strand, within EX31_RS14430at 68.896 kb on - strand, within EX31_RS14430at 68.896 kb on - strand, within EX31_RS14430at 68.919 kb on + strand, within EX31_RS14430at 68.919 kb on + strand, within EX31_RS14430at 68.919 kb on + strand, within EX31_RS14430at 68.953 kb on + strand, within EX31_RS14430at 68.987 kb on + strand, within EX31_RS14430at 69.016 kb on + strand, within EX31_RS14430at 69.017 kb on - strand, within EX31_RS14430at 69.018 kb on + strand, within EX31_RS14430at 69.018 kb on + strand, within EX31_RS14430at 69.018 kb on + strand, within EX31_RS14430at 69.018 kb on + strand, within EX31_RS14430at 69.018 kb on + strand, within EX31_RS14430at 69.018 kb on + strand, within EX31_RS14430at 69.018 kb on + strand, within EX31_RS14430at 69.018 kb on + strand, within EX31_RS14430at 69.018 kb on + strand, within EX31_RS14430at 69.018 kb on + strand, within EX31_RS14430at 69.018 kb on + strand, within EX31_RS14430at 69.018 kb on + strand, within EX31_RS14430at 69.018 kb on + strand, within EX31_RS14430at 69.018 kb on + strand, within EX31_RS14430at 69.018 kb on + strand, within EX31_RS14430at 69.019 kb on - strand, within EX31_RS14430at 69.019 kb on - strand, within EX31_RS14430at 69.019 kb on - strand, within EX31_RS14430at 69.019 kb on - strand, within EX31_RS14430at 69.019 kb on - strand, within EX31_RS14430at 69.154 kb on - strand, within EX31_RS14430at 69.154 kb on - strand, within EX31_RS14430at 69.154 kb on - strand, within EX31_RS14430at 69.216 kb on - strand, within EX31_RS14430at 69.261 kb on + strand, within EX31_RS14430at 69.261 kb on + strand, within EX31_RS14430at 69.303 kb on + strand, within EX31_RS14430at 69.304 kb on - strand, within EX31_RS14430at 69.306 kb on + strand, within EX31_RS14430at 69.306 kb on + strand, within EX31_RS14430at 69.306 kb on + strand, within EX31_RS14430at 69.306 kb on + strand, within EX31_RS14430at 69.307 kb on - strand, within EX31_RS14430at 69.323 kb on + strand, within EX31_RS14430at 69.370 kb on - strand, within EX31_RS14430at 69.370 kb on - strand, within EX31_RS14430at 69.372 kb on + strand, within EX31_RS14430at 69.373 kb on - strand, within EX31_RS14430at 69.395 kb on - strand, within EX31_RS14430at 69.445 kb on + strandat 69.445 kb on + strandat 69.446 kb on - strandat 69.493 kb on + strandat 69.493 kb on + strandat 69.505 kb on + strandat 69.505 kb on + strandat 69.632 kb on - strand, within EX31_RS14435at 69.634 kb on + strand, within EX31_RS14435at 69.774 kb on + strand, within EX31_RS14435at 69.774 kb on + strand, within EX31_RS14435at 69.794 kb on - strand, within EX31_RS14435at 69.987 kb on + strand, within EX31_RS14435at 70.043 kb on + strand, within EX31_RS14435at 70.043 kb on + strand, within EX31_RS14435at 70.043 kb on + strand, within EX31_RS14435at 70.043 kb on + strand, within EX31_RS14435at 70.043 kb on + strand, within EX31_RS14435at 70.043 kb on + strand, within EX31_RS14435at 70.044 kb on - strand, within EX31_RS14435at 70.044 kb on - strand, within EX31_RS14435at 70.044 kb on - strand, within EX31_RS14435at 70.045 kb on + strand, within EX31_RS14435at 70.145 kb on + strand, within EX31_RS14435at 70.149 kb on + strand, within EX31_RS14435at 70.149 kb on + strand, within EX31_RS14435at 70.149 kb on + strand, within EX31_RS14435at 70.150 kb on - strand, within EX31_RS14435at 70.253 kb on + strand, within EX31_RS14435at 70.253 kb on + strand, within EX31_RS14435at 70.253 kb on + strand, within EX31_RS14435at 70.320 kb on + strand, within EX31_RS14435at 70.320 kb on + strand, within EX31_RS14435at 70.320 kb on + strand, within EX31_RS14435at 70.321 kb on - strand, within EX31_RS14435at 70.321 kb on - strand, within EX31_RS14435at 70.321 kb on - strand, within EX31_RS14435at 70.328 kb on + strand, within EX31_RS14435at 70.331 kb on + strand, within EX31_RS14435at 70.331 kb on + strand, within EX31_RS14435at 70.332 kb on - strand, within EX31_RS14435at 70.367 kb on + strand, within EX31_RS14435at 70.367 kb on + strand, within EX31_RS14435at 70.368 kb on - strand, within EX31_RS14435at 70.368 kb on - strand, within EX31_RS14435at 70.368 kb on - strand, within EX31_RS14435at 70.420 kb on + strand, within EX31_RS14435at 70.501 kb on - strand, within EX31_RS14435at 70.501 kb on - strand, within EX31_RS14435at 70.501 kb on - strand, within EX31_RS14435at 70.515 kb on - strand, within EX31_RS14435at 70.681 kb on + strandat 70.681 kb on + strandat 70.681 kb on + strandat 70.682 kb on - strandat 70.682 kb on - strandat 70.682 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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68,502 + +0.9
68,502 + -0.2
68,502 + +0.4
68,502 + +0.5
68,502 + -0.0
68,502 + +0.0
68,502 + -0.2
68,502 + +0.5
68,503 - -0.2
68,503 - +0.6
68,503 - -2.2
68,503 - +0.2
68,575 + EX31_RS14430 0.14 +0.2
68,672 + EX31_RS14430 0.23 -1.2
68,672 + EX31_RS14430 0.23 +0.4
68,673 - EX31_RS14430 0.23 -1.9
68,673 - EX31_RS14430 0.23 -0.6
68,673 - EX31_RS14430 0.23 -1.1
68,683 + EX31_RS14430 0.24 +0.4
68,691 - EX31_RS14430 0.25 -0.2
68,716 + EX31_RS14430 0.27 -0.4
68,716 + EX31_RS14430 0.27 +0.7
68,716 + EX31_RS14430 0.27 +1.0
68,717 - EX31_RS14430 0.27 +0.3
68,717 - EX31_RS14430 0.27 +0.4
68,717 - EX31_RS14430 0.27 -0.3
68,730 + EX31_RS14430 0.28 -0.0
68,772 + EX31_RS14430 0.32 +1.0
68,773 - EX31_RS14430 0.32 -1.6
68,773 - EX31_RS14430 0.32 -0.2
68,803 + EX31_RS14430 0.35 -0.3
68,805 + EX31_RS14430 0.35 +0.6
68,806 - EX31_RS14430 0.35 +0.6
68,841 + EX31_RS14430 0.38 -0.5
68,841 + EX31_RS14430 0.38 -0.6
68,841 + EX31_RS14430 0.38 +0.4
68,842 - EX31_RS14430 0.39 +1.7
68,842 - EX31_RS14430 0.39 -2.9
68,842 - EX31_RS14430 0.39 +0.4
68,842 - EX31_RS14430 0.39 -1.2
68,842 - EX31_RS14430 0.39 -1.0
68,842 - EX31_RS14430 0.39 -0.2
68,849 + EX31_RS14430 0.39 -1.0
68,850 - EX31_RS14430 0.39 +1.7
68,880 + EX31_RS14430 0.42 +0.7
68,895 + EX31_RS14430 0.43 +0.4
68,895 + EX31_RS14430 0.43 +0.6
68,895 + EX31_RS14430 0.43 +1.0
68,895 + EX31_RS14430 0.43 +0.2
68,895 + EX31_RS14430 0.43 -0.7
68,895 + EX31_RS14430 0.43 +0.2
68,895 + EX31_RS14430 0.43 -0.5
68,895 + EX31_RS14430 0.43 +0.3
68,896 - EX31_RS14430 0.43 -0.3
68,896 - EX31_RS14430 0.43 -0.9
68,896 - EX31_RS14430 0.43 -0.7
68,919 + EX31_RS14430 0.46 -0.0
68,919 + EX31_RS14430 0.46 -1.2
68,919 + EX31_RS14430 0.46 +0.4
68,953 + EX31_RS14430 0.49 -0.6
68,987 + EX31_RS14430 0.52 +0.1
69,016 + EX31_RS14430 0.55 -2.1
69,017 - EX31_RS14430 0.55 -0.0
69,018 + EX31_RS14430 0.55 +0.4
69,018 + EX31_RS14430 0.55 +1.0
69,018 + EX31_RS14430 0.55 -0.6
69,018 + EX31_RS14430 0.55 -0.7
69,018 + EX31_RS14430 0.55 +0.1
69,018 + EX31_RS14430 0.55 -0.9
69,018 + EX31_RS14430 0.55 -0.3
69,018 + EX31_RS14430 0.55 +0.1
69,018 + EX31_RS14430 0.55 +0.0
69,018 + EX31_RS14430 0.55 -1.5
69,018 + EX31_RS14430 0.55 -0.4
69,018 + EX31_RS14430 0.55 +0.1
69,018 + EX31_RS14430 0.55 +0.2
69,018 + EX31_RS14430 0.55 +0.2
69,018 + EX31_RS14430 0.55 +0.2
69,019 - EX31_RS14430 0.55 -0.5
69,019 - EX31_RS14430 0.55 +0.3
69,019 - EX31_RS14430 0.55 +0.4
69,019 - EX31_RS14430 0.55 -1.2
69,019 - EX31_RS14430 0.55 +1.2
69,154 - EX31_RS14430 0.67 +0.2
69,154 - EX31_RS14430 0.67 +0.1
69,154 - EX31_RS14430 0.67 -0.3
69,216 - EX31_RS14430 0.73 -1.7
69,261 + EX31_RS14430 0.77 -2.4
69,261 + EX31_RS14430 0.77 +0.3
69,303 + EX31_RS14430 0.81 +0.8
69,304 - EX31_RS14430 0.81 +1.0
69,306 + EX31_RS14430 0.81 -1.3
69,306 + EX31_RS14430 0.81 -0.5
69,306 + EX31_RS14430 0.81 -0.1
69,306 + EX31_RS14430 0.81 +0.1
69,307 - EX31_RS14430 0.81 +0.3
69,323 + EX31_RS14430 0.83 -0.0
69,370 - EX31_RS14430 0.87 -1.9
69,370 - EX31_RS14430 0.87 -0.8
69,372 + EX31_RS14430 0.87 +0.3
69,373 - EX31_RS14430 0.88 +0.5
69,395 - EX31_RS14430 0.90 -0.5
69,445 + -0.5
69,445 + +0.4
69,446 - -1.9
69,493 + +0.2
69,493 + +0.6
69,505 + -0.9
69,505 + -2.9
69,632 - EX31_RS14435 0.12 +0.6
69,634 + EX31_RS14435 0.12 +0.1
69,774 + EX31_RS14435 0.24 +2.3
69,774 + EX31_RS14435 0.24 +0.7
69,794 - EX31_RS14435 0.26 -1.9
69,987 + EX31_RS14435 0.42 -2.4
70,043 + EX31_RS14435 0.47 -1.2
70,043 + EX31_RS14435 0.47 -0.4
70,043 + EX31_RS14435 0.47 -1.5
70,043 + EX31_RS14435 0.47 -0.9
70,043 + EX31_RS14435 0.47 -1.9
70,043 + EX31_RS14435 0.47 -0.3
70,044 - EX31_RS14435 0.47 +0.9
70,044 - EX31_RS14435 0.47 -1.5
70,044 - EX31_RS14435 0.47 -1.0
70,045 + EX31_RS14435 0.48 -1.8
70,145 + EX31_RS14435 0.56 -0.7
70,149 + EX31_RS14435 0.57 -0.2
70,149 + EX31_RS14435 0.57 -1.6
70,149 + EX31_RS14435 0.57 +0.6
70,150 - EX31_RS14435 0.57 -0.7
70,253 + EX31_RS14435 0.66 -0.1
70,253 + EX31_RS14435 0.66 +0.2
70,253 + EX31_RS14435 0.66 -0.3
70,320 + EX31_RS14435 0.72 -0.5
70,320 + EX31_RS14435 0.72 -0.6
70,320 + EX31_RS14435 0.72 -0.8
70,321 - EX31_RS14435 0.72 -0.4
70,321 - EX31_RS14435 0.72 -2.1
70,321 - EX31_RS14435 0.72 +1.3
70,328 + EX31_RS14435 0.72 -0.6
70,331 + EX31_RS14435 0.73 -1.8
70,331 + EX31_RS14435 0.73 -1.2
70,332 - EX31_RS14435 0.73 +0.1
70,367 + EX31_RS14435 0.76 +0.4
70,367 + EX31_RS14435 0.76 +0.5
70,368 - EX31_RS14435 0.76 +2.2
70,368 - EX31_RS14435 0.76 -2.2
70,368 - EX31_RS14435 0.76 +0.6
70,420 + EX31_RS14435 0.80 +1.7
70,501 - EX31_RS14435 0.87 +0.4
70,501 - EX31_RS14435 0.87 -1.2
70,501 - EX31_RS14435 0.87 -1.2
70,515 - EX31_RS14435 0.89 -1.3
70,681 + +0.4
70,681 + -1.4
70,681 + +0.2
70,682 - +0.4
70,682 - -0.3
70,682 - -0.5

Or see this region's nucleotide sequence