Strain Fitness in Rahnella sp. WP5 around EX31_RS09765

Experiment: MGL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS09760 and EX31_RS09765 are separated by 381 nucleotidesEX31_RS09765 and EX31_RS09770 are separated by 91 nucleotides EX31_RS09760: EX31_RS09760 - D-xylose ABC transporter substrate-binding protein, at 156,807 to 157,799 _RS09760 EX31_RS09765: EX31_RS09765 - xylose isomerase, at 158,181 to 159,500 _RS09765 EX31_RS09770: EX31_RS09770 - xylulokinase, at 159,592 to 161,043 _RS09770 Position (kb) 158 159 160Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 157.354 kb on + strand, within EX31_RS09760at 157.354 kb on + strand, within EX31_RS09760at 157.354 kb on + strand, within EX31_RS09760at 157.430 kb on - strand, within EX31_RS09760at 157.430 kb on - strand, within EX31_RS09760at 157.466 kb on - strand, within EX31_RS09760at 157.531 kb on + strand, within EX31_RS09760at 157.571 kb on + strand, within EX31_RS09760at 157.814 kb on + strandat 157.814 kb on + strandat 157.816 kb on + strandat 157.822 kb on + strandat 157.823 kb on - strandat 157.823 kb on - strandat 157.826 kb on + strandat 157.827 kb on - strandat 157.850 kb on + strandat 157.959 kb on + strandat 157.960 kb on - strandat 157.970 kb on + strandat 157.971 kb on - strandat 157.971 kb on - strandat 158.043 kb on + strandat 158.070 kb on + strandat 158.070 kb on + strandat 158.131 kb on + strandat 158.238 kb on - strandat 158.259 kb on + strandat 158.259 kb on + strandat 158.260 kb on - strandat 158.260 kb on - strandat 158.260 kb on - strandat 158.423 kb on + strand, within EX31_RS09765at 158.469 kb on + strand, within EX31_RS09765at 158.470 kb on - strand, within EX31_RS09765at 158.473 kb on - strand, within EX31_RS09765at 158.473 kb on - strand, within EX31_RS09765at 158.523 kb on + strand, within EX31_RS09765at 158.531 kb on + strand, within EX31_RS09765at 158.555 kb on - strand, within EX31_RS09765at 158.601 kb on - strand, within EX31_RS09765at 158.601 kb on - strand, within EX31_RS09765at 158.601 kb on - strand, within EX31_RS09765at 158.654 kb on + strand, within EX31_RS09765at 158.733 kb on + strand, within EX31_RS09765at 158.733 kb on + strand, within EX31_RS09765at 158.733 kb on + strand, within EX31_RS09765at 158.778 kb on - strand, within EX31_RS09765at 158.778 kb on - strand, within EX31_RS09765at 158.880 kb on - strand, within EX31_RS09765at 158.907 kb on + strand, within EX31_RS09765at 158.907 kb on + strand, within EX31_RS09765at 158.907 kb on + strand, within EX31_RS09765at 158.907 kb on + strand, within EX31_RS09765at 158.907 kb on + strand, within EX31_RS09765at 158.908 kb on - strand, within EX31_RS09765at 158.908 kb on - strand, within EX31_RS09765at 158.913 kb on + strand, within EX31_RS09765at 158.913 kb on + strand, within EX31_RS09765at 158.913 kb on + strand, within EX31_RS09765at 158.914 kb on - strand, within EX31_RS09765at 158.931 kb on + strand, within EX31_RS09765at 158.931 kb on + strand, within EX31_RS09765at 159.147 kb on + strand, within EX31_RS09765at 159.147 kb on + strand, within EX31_RS09765at 159.147 kb on + strand, within EX31_RS09765at 159.148 kb on - strand, within EX31_RS09765at 159.148 kb on - strand, within EX31_RS09765at 159.148 kb on - strand, within EX31_RS09765at 159.228 kb on + strand, within EX31_RS09765at 159.228 kb on + strand, within EX31_RS09765at 159.228 kb on + strand, within EX31_RS09765at 159.228 kb on + strand, within EX31_RS09765at 159.228 kb on + strand, within EX31_RS09765at 159.229 kb on - strand, within EX31_RS09765at 159.229 kb on - strand, within EX31_RS09765at 159.229 kb on - strand, within EX31_RS09765at 159.229 kb on - strand, within EX31_RS09765at 159.240 kb on + strand, within EX31_RS09765at 159.339 kb on + strand, within EX31_RS09765at 159.340 kb on - strand, within EX31_RS09765at 159.411 kb on + strandat 159.511 kb on + strandat 159.580 kb on + strandat 159.591 kb on + strandat 159.591 kb on + strandat 159.591 kb on + strandat 159.591 kb on + strandat 159.591 kb on + strandat 159.592 kb on - strandat 159.592 kb on - strandat 159.592 kb on - strandat 159.596 kb on - strandat 159.605 kb on + strandat 159.638 kb on + strandat 159.794 kb on + strand, within EX31_RS09770at 159.795 kb on - strand, within EX31_RS09770at 159.795 kb on - strand, within EX31_RS09770at 159.857 kb on + strand, within EX31_RS09770at 159.860 kb on + strand, within EX31_RS09770at 159.860 kb on + strand, within EX31_RS09770at 159.861 kb on - strand, within EX31_RS09770at 160.054 kb on + strand, within EX31_RS09770at 160.055 kb on - strand, within EX31_RS09770at 160.092 kb on + strand, within EX31_RS09770at 160.092 kb on + strand, within EX31_RS09770at 160.093 kb on - strand, within EX31_RS09770at 160.093 kb on - strand, within EX31_RS09770at 160.132 kb on - strand, within EX31_RS09770at 160.323 kb on + strand, within EX31_RS09770at 160.324 kb on - strand, within EX31_RS09770at 160.344 kb on - strand, within EX31_RS09770at 160.367 kb on - strand, within EX31_RS09770

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MGL
remove
157,354 + EX31_RS09760 0.55 -2.5
157,354 + EX31_RS09760 0.55 -1.2
157,354 + EX31_RS09760 0.55 -1.2
157,430 - EX31_RS09760 0.63 -1.1
157,430 - EX31_RS09760 0.63 -1.5
157,466 - EX31_RS09760 0.66 +1.8
157,531 + EX31_RS09760 0.73 +0.4
157,571 + EX31_RS09760 0.77 -0.4
157,814 + -1.0
157,814 + -0.3
157,816 + +0.3
157,822 + +0.7
157,823 - +1.6
157,823 - -0.5
157,826 + -0.4
157,827 - +0.2
157,850 + -1.4
157,959 + -1.6
157,960 - +1.3
157,970 + +0.6
157,971 - +0.1
157,971 - -1.2
158,043 + -1.4
158,070 + +0.8
158,070 + +0.0
158,131 + +0.7
158,238 - -0.9
158,259 + +0.7
158,259 + +1.4
158,260 - -0.5
158,260 - +0.5
158,260 - -0.7
158,423 + EX31_RS09765 0.18 -1.9
158,469 + EX31_RS09765 0.22 +0.6
158,470 - EX31_RS09765 0.22 +0.8
158,473 - EX31_RS09765 0.22 +0.6
158,473 - EX31_RS09765 0.22 -1.3
158,523 + EX31_RS09765 0.26 -0.1
158,531 + EX31_RS09765 0.27 +0.0
158,555 - EX31_RS09765 0.28 +1.0
158,601 - EX31_RS09765 0.32 -0.9
158,601 - EX31_RS09765 0.32 +1.6
158,601 - EX31_RS09765 0.32 +0.1
158,654 + EX31_RS09765 0.36 -0.4
158,733 + EX31_RS09765 0.42 -0.7
158,733 + EX31_RS09765 0.42 -0.4
158,733 + EX31_RS09765 0.42 -1.5
158,778 - EX31_RS09765 0.45 -1.1
158,778 - EX31_RS09765 0.45 +1.1
158,880 - EX31_RS09765 0.53 +1.7
158,907 + EX31_RS09765 0.55 -0.8
158,907 + EX31_RS09765 0.55 -0.4
158,907 + EX31_RS09765 0.55 -0.3
158,907 + EX31_RS09765 0.55 +0.5
158,907 + EX31_RS09765 0.55 -0.2
158,908 - EX31_RS09765 0.55 +1.4
158,908 - EX31_RS09765 0.55 +0.1
158,913 + EX31_RS09765 0.55 -0.4
158,913 + EX31_RS09765 0.55 +0.3
158,913 + EX31_RS09765 0.55 -0.6
158,914 - EX31_RS09765 0.56 +0.9
158,931 + EX31_RS09765 0.57 +0.1
158,931 + EX31_RS09765 0.57 -1.0
159,147 + EX31_RS09765 0.73 -0.2
159,147 + EX31_RS09765 0.73 -1.7
159,147 + EX31_RS09765 0.73 +1.0
159,148 - EX31_RS09765 0.73 +0.8
159,148 - EX31_RS09765 0.73 +0.6
159,148 - EX31_RS09765 0.73 +0.7
159,228 + EX31_RS09765 0.79 -1.7
159,228 + EX31_RS09765 0.79 -0.4
159,228 + EX31_RS09765 0.79 +0.2
159,228 + EX31_RS09765 0.79 -0.9
159,228 + EX31_RS09765 0.79 -1.4
159,229 - EX31_RS09765 0.79 +1.4
159,229 - EX31_RS09765 0.79 -1.6
159,229 - EX31_RS09765 0.79 -2.4
159,229 - EX31_RS09765 0.79 +0.3
159,240 + EX31_RS09765 0.80 -3.0
159,339 + EX31_RS09765 0.88 -1.4
159,340 - EX31_RS09765 0.88 +1.4
159,411 + -0.4
159,511 + -0.9
159,580 + +0.9
159,591 + -0.8
159,591 + +0.6
159,591 + -2.3
159,591 + +0.1
159,591 + +1.0
159,592 - +1.2
159,592 - -0.3
159,592 - +0.1
159,596 - +0.6
159,605 + -1.2
159,638 + +2.0
159,794 + EX31_RS09770 0.14 -0.6
159,795 - EX31_RS09770 0.14 -0.9
159,795 - EX31_RS09770 0.14 -0.9
159,857 + EX31_RS09770 0.18 -0.5
159,860 + EX31_RS09770 0.18 -0.6
159,860 + EX31_RS09770 0.18 -2.0
159,861 - EX31_RS09770 0.19 -0.9
160,054 + EX31_RS09770 0.32 +2.0
160,055 - EX31_RS09770 0.32 +0.2
160,092 + EX31_RS09770 0.34 -1.0
160,092 + EX31_RS09770 0.34 -0.9
160,093 - EX31_RS09770 0.35 +0.0
160,093 - EX31_RS09770 0.35 -0.1
160,132 - EX31_RS09770 0.37 -0.6
160,323 + EX31_RS09770 0.50 +0.7
160,324 - EX31_RS09770 0.50 +0.2
160,344 - EX31_RS09770 0.52 -0.9
160,367 - EX31_RS09770 0.53 -1.0

Or see this region's nucleotide sequence