Strain Fitness in Rahnella sp. WP5 around EX31_RS07135

Experiment: MGL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS07130 and EX31_RS07135 are separated by 182 nucleotidesEX31_RS07135 and EX31_RS07140 are separated by 108 nucleotides EX31_RS07130: EX31_RS07130 - ABC transporter substrate-binding protein, at 218,217 to 219,155 _RS07130 EX31_RS07135: EX31_RS07135 - hypothetical protein, at 219,338 to 219,565 _RS07135 EX31_RS07140: EX31_RS07140 - oxalate/formate MFS antiporter, at 219,674 to 220,933 _RS07140 Position (kb) 219 220Strain fitness (log2 ratio) -2 -1 0 1 2at 218.351 kb on + strand, within EX31_RS07130at 218.352 kb on - strand, within EX31_RS07130at 218.470 kb on + strand, within EX31_RS07130at 218.867 kb on + strand, within EX31_RS07130at 218.874 kb on - strand, within EX31_RS07130at 218.923 kb on + strand, within EX31_RS07130at 218.932 kb on - strand, within EX31_RS07130at 219.153 kb on + strandat 219.292 kb on - strandat 219.295 kb on - strandat 219.434 kb on + strand, within EX31_RS07135at 219.510 kb on + strand, within EX31_RS07135at 219.518 kb on + strand, within EX31_RS07135at 219.661 kb on - strandat 219.672 kb on - strandat 219.773 kb on + strandat 219.773 kb on + strandat 219.774 kb on - strandat 219.774 kb on - strandat 219.774 kb on - strandat 219.802 kb on - strand, within EX31_RS07140at 219.840 kb on - strand, within EX31_RS07140at 219.854 kb on - strand, within EX31_RS07140at 219.854 kb on - strand, within EX31_RS07140at 219.854 kb on - strand, within EX31_RS07140at 219.856 kb on - strand, within EX31_RS07140at 219.856 kb on - strand, within EX31_RS07140at 219.856 kb on - strand, within EX31_RS07140at 219.856 kb on - strand, within EX31_RS07140at 219.856 kb on - strand, within EX31_RS07140at 219.856 kb on - strand, within EX31_RS07140at 219.872 kb on - strand, within EX31_RS07140at 220.418 kb on - strand, within EX31_RS07140at 220.418 kb on - strand, within EX31_RS07140at 220.564 kb on - strand, within EX31_RS07140at 220.564 kb on - strand, within EX31_RS07140

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MGL
remove
218,351 + EX31_RS07130 0.14 -0.6
218,352 - EX31_RS07130 0.14 +0.9
218,470 + EX31_RS07130 0.27 +1.8
218,867 + EX31_RS07130 0.69 +0.0
218,874 - EX31_RS07130 0.70 -0.0
218,923 + EX31_RS07130 0.75 -0.8
218,932 - EX31_RS07130 0.76 +0.7
219,153 + -0.9
219,292 - +1.1
219,295 - -0.1
219,434 + EX31_RS07135 0.42 +0.2
219,510 + EX31_RS07135 0.75 -1.6
219,518 + EX31_RS07135 0.79 -1.4
219,661 - +0.7
219,672 - +0.1
219,773 + +1.0
219,773 + -0.5
219,774 - -0.6
219,774 - +1.5
219,774 - -1.0
219,802 - EX31_RS07140 0.10 -2.0
219,840 - EX31_RS07140 0.13 +1.5
219,854 - EX31_RS07140 0.14 -1.0
219,854 - EX31_RS07140 0.14 +0.7
219,854 - EX31_RS07140 0.14 -1.9
219,856 - EX31_RS07140 0.14 -0.7
219,856 - EX31_RS07140 0.14 +0.6
219,856 - EX31_RS07140 0.14 +1.2
219,856 - EX31_RS07140 0.14 +0.5
219,856 - EX31_RS07140 0.14 -2.5
219,856 - EX31_RS07140 0.14 +0.5
219,872 - EX31_RS07140 0.16 -0.2
220,418 - EX31_RS07140 0.59 -1.4
220,418 - EX31_RS07140 0.59 -0.3
220,564 - EX31_RS07140 0.71 +1.6
220,564 - EX31_RS07140 0.71 +1.0

Or see this region's nucleotide sequence