Strain Fitness in Rahnella sp. WP5 around EX31_RS04990

Experiment: MGL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS04985 and EX31_RS04990 are separated by 219 nucleotidesEX31_RS04990 and EX31_RS04995 are separated by 9 nucleotides EX31_RS04985: EX31_RS04985 - PLP-dependent transferase, at 123,262 to 124,452 _RS04985 EX31_RS04990: EX31_RS04990 - rhomboid family intramembrane serine protease GlpG, at 124,672 to 125,505 _RS04990 EX31_RS04995: EX31_RS04995 - DeoR/GlpR family transcriptional regulator, at 125,515 to 126,273 _RS04995 Position (kb) 124 125 126Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 123.820 kb on - strand, within EX31_RS04985at 123.822 kb on + strand, within EX31_RS04985at 123.822 kb on + strand, within EX31_RS04985at 123.822 kb on + strand, within EX31_RS04985at 123.822 kb on + strand, within EX31_RS04985at 123.823 kb on - strand, within EX31_RS04985at 123.823 kb on - strand, within EX31_RS04985at 123.823 kb on - strand, within EX31_RS04985at 123.823 kb on - strand, within EX31_RS04985at 123.823 kb on - strand, within EX31_RS04985at 123.838 kb on + strand, within EX31_RS04985at 123.838 kb on + strand, within EX31_RS04985at 123.838 kb on + strand, within EX31_RS04985at 123.895 kb on + strand, within EX31_RS04985at 123.895 kb on + strand, within EX31_RS04985at 123.895 kb on + strand, within EX31_RS04985at 123.895 kb on + strand, within EX31_RS04985at 123.895 kb on + strand, within EX31_RS04985at 123.895 kb on + strand, within EX31_RS04985at 123.896 kb on - strand, within EX31_RS04985at 123.896 kb on - strand, within EX31_RS04985at 123.896 kb on - strand, within EX31_RS04985at 123.896 kb on - strand, within EX31_RS04985at 123.896 kb on - strand, within EX31_RS04985at 123.896 kb on - strand, within EX31_RS04985at 123.930 kb on - strand, within EX31_RS04985at 123.930 kb on - strand, within EX31_RS04985at 123.930 kb on - strand, within EX31_RS04985at 123.950 kb on + strand, within EX31_RS04985at 123.951 kb on - strand, within EX31_RS04985at 123.951 kb on - strand, within EX31_RS04985at 124.130 kb on - strand, within EX31_RS04985at 124.450 kb on + strandat 124.451 kb on - strandat 124.520 kb on + strandat 124.529 kb on - strandat 124.529 kb on - strandat 124.539 kb on - strandat 124.556 kb on - strandat 124.584 kb on + strandat 124.584 kb on + strandat 124.584 kb on + strandat 124.585 kb on - strandat 124.585 kb on - strandat 124.585 kb on - strandat 124.586 kb on + strandat 124.586 kb on + strandat 124.586 kb on + strandat 124.586 kb on + strandat 124.587 kb on - strandat 124.612 kb on + strandat 124.612 kb on + strandat 124.612 kb on + strandat 124.617 kb on + strandat 124.617 kb on + strandat 124.617 kb on + strandat 124.617 kb on + strandat 124.618 kb on - strandat 124.618 kb on - strandat 124.664 kb on + strandat 124.686 kb on + strandat 124.726 kb on + strandat 124.726 kb on + strandat 124.726 kb on + strandat 124.727 kb on - strandat 124.727 kb on - strandat 124.727 kb on - strandat 124.727 kb on - strandat 124.727 kb on - strandat 124.727 kb on - strandat 124.747 kb on - strandat 124.747 kb on - strandat 124.778 kb on + strand, within EX31_RS04990at 124.778 kb on + strand, within EX31_RS04990at 124.778 kb on + strand, within EX31_RS04990at 124.778 kb on + strand, within EX31_RS04990at 124.778 kb on + strand, within EX31_RS04990at 124.778 kb on + strand, within EX31_RS04990at 124.778 kb on + strand, within EX31_RS04990at 124.778 kb on + strand, within EX31_RS04990at 124.779 kb on - strand, within EX31_RS04990at 124.779 kb on - strand, within EX31_RS04990at 124.779 kb on - strand, within EX31_RS04990at 124.779 kb on - strand, within EX31_RS04990at 124.779 kb on - strand, within EX31_RS04990at 124.864 kb on + strand, within EX31_RS04990at 124.907 kb on + strand, within EX31_RS04990at 124.907 kb on + strand, within EX31_RS04990at 124.907 kb on + strand, within EX31_RS04990at 124.907 kb on + strand, within EX31_RS04990at 124.908 kb on - strand, within EX31_RS04990at 124.999 kb on - strand, within EX31_RS04990at 125.075 kb on + strand, within EX31_RS04990at 125.076 kb on - strand, within EX31_RS04990at 125.115 kb on + strand, within EX31_RS04990at 125.131 kb on - strand, within EX31_RS04990at 125.131 kb on - strand, within EX31_RS04990at 125.284 kb on + strand, within EX31_RS04990at 125.285 kb on - strand, within EX31_RS04990at 125.285 kb on - strand, within EX31_RS04990at 125.341 kb on + strand, within EX31_RS04990at 125.341 kb on + strand, within EX31_RS04990at 125.341 kb on + strand, within EX31_RS04990at 125.341 kb on + strand, within EX31_RS04990at 125.341 kb on + strand, within EX31_RS04990at 125.341 kb on + strand, within EX31_RS04990at 125.341 kb on + strand, within EX31_RS04990at 125.341 kb on + strand, within EX31_RS04990at 125.341 kb on + strand, within EX31_RS04990at 125.342 kb on - strand, within EX31_RS04990at 125.342 kb on - strand, within EX31_RS04990at 125.342 kb on - strand, within EX31_RS04990at 125.342 kb on - strand, within EX31_RS04990at 125.342 kb on - strand, within EX31_RS04990at 125.342 kb on - strand, within EX31_RS04990at 125.342 kb on - strand, within EX31_RS04990at 125.358 kb on - strand, within EX31_RS04990at 125.397 kb on + strand, within EX31_RS04990at 125.397 kb on + strand, within EX31_RS04990at 125.397 kb on + strand, within EX31_RS04990at 125.499 kb on + strandat 125.503 kb on + strandat 125.503 kb on + strandat 125.503 kb on + strandat 125.553 kb on - strandat 125.569 kb on + strandat 125.570 kb on - strandat 125.570 kb on - strandat 125.570 kb on - strandat 125.619 kb on + strand, within EX31_RS04995at 125.620 kb on - strand, within EX31_RS04995at 125.620 kb on - strand, within EX31_RS04995at 125.655 kb on + strand, within EX31_RS04995at 125.656 kb on - strand, within EX31_RS04995at 125.713 kb on + strand, within EX31_RS04995at 125.713 kb on + strand, within EX31_RS04995at 125.713 kb on + strand, within EX31_RS04995at 125.713 kb on + strand, within EX31_RS04995at 125.713 kb on + strand, within EX31_RS04995at 125.713 kb on + strand, within EX31_RS04995at 125.714 kb on - strand, within EX31_RS04995at 125.714 kb on - strand, within EX31_RS04995at 125.714 kb on - strand, within EX31_RS04995at 125.714 kb on - strand, within EX31_RS04995at 125.714 kb on - strand, within EX31_RS04995at 125.802 kb on + strand, within EX31_RS04995at 125.803 kb on - strand, within EX31_RS04995at 125.848 kb on - strand, within EX31_RS04995at 125.853 kb on + strand, within EX31_RS04995at 126.042 kb on + strand, within EX31_RS04995at 126.043 kb on - strand, within EX31_RS04995at 126.193 kb on + strand, within EX31_RS04995at 126.193 kb on + strand, within EX31_RS04995at 126.208 kb on - strandat 126.286 kb on + strandat 126.286 kb on + strandat 126.287 kb on - strandat 126.399 kb on + strandat 126.399 kb on + strandat 126.399 kb on + strandat 126.400 kb on - strandat 126.400 kb on - strandat 126.443 kb on + strandat 126.443 kb on + strandat 126.443 kb on + strandat 126.443 kb on + strandat 126.443 kb on + strandat 126.443 kb on + strandat 126.443 kb on + strandat 126.443 kb on + strandat 126.443 kb on + strandat 126.444 kb on - strandat 126.444 kb on - strandat 126.444 kb on - strandat 126.453 kb on + strandat 126.453 kb on + strandat 126.454 kb on - strandat 126.454 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MGL
remove
123,820 - EX31_RS04985 0.47 +1.9
123,822 + EX31_RS04985 0.47 -0.8
123,822 + EX31_RS04985 0.47 -0.2
123,822 + EX31_RS04985 0.47 +0.8
123,822 + EX31_RS04985 0.47 -1.3
123,823 - EX31_RS04985 0.47 +0.1
123,823 - EX31_RS04985 0.47 +0.3
123,823 - EX31_RS04985 0.47 -1.0
123,823 - EX31_RS04985 0.47 +0.5
123,823 - EX31_RS04985 0.47 +0.6
123,838 + EX31_RS04985 0.48 +1.0
123,838 + EX31_RS04985 0.48 -0.3
123,838 + EX31_RS04985 0.48 +1.3
123,895 + EX31_RS04985 0.53 -0.6
123,895 + EX31_RS04985 0.53 +1.5
123,895 + EX31_RS04985 0.53 -0.2
123,895 + EX31_RS04985 0.53 -0.5
123,895 + EX31_RS04985 0.53 -0.5
123,895 + EX31_RS04985 0.53 +0.6
123,896 - EX31_RS04985 0.53 +0.1
123,896 - EX31_RS04985 0.53 -0.6
123,896 - EX31_RS04985 0.53 +0.3
123,896 - EX31_RS04985 0.53 -0.4
123,896 - EX31_RS04985 0.53 -0.0
123,896 - EX31_RS04985 0.53 +0.0
123,930 - EX31_RS04985 0.56 -0.1
123,930 - EX31_RS04985 0.56 +0.3
123,930 - EX31_RS04985 0.56 -1.0
123,950 + EX31_RS04985 0.58 +0.2
123,951 - EX31_RS04985 0.58 -0.2
123,951 - EX31_RS04985 0.58 -0.5
124,130 - EX31_RS04985 0.73 +0.7
124,450 + +0.0
124,451 - +0.2
124,520 + -0.4
124,529 - +0.1
124,529 - -0.3
124,539 - +0.7
124,556 - -0.6
124,584 + -0.1
124,584 + +1.0
124,584 + -1.9
124,585 - +0.3
124,585 - -0.6
124,585 - -0.7
124,586 + -1.2
124,586 + -0.5
124,586 + -0.5
124,586 + -0.5
124,587 - -0.9
124,612 + -2.0
124,612 + -0.1
124,612 + -0.4
124,617 + -0.6
124,617 + -0.4
124,617 + +0.5
124,617 + +0.9
124,618 - +0.4
124,618 - +0.2
124,664 + -0.2
124,686 + +0.7
124,726 + +0.0
124,726 + +0.4
124,726 + +1.0
124,727 - -1.2
124,727 - -1.0
124,727 - -0.3
124,727 - -0.0
124,727 - -0.9
124,727 - -0.6
124,747 - -1.2
124,747 - -0.2
124,778 + EX31_RS04990 0.13 +0.6
124,778 + EX31_RS04990 0.13 -0.7
124,778 + EX31_RS04990 0.13 -0.7
124,778 + EX31_RS04990 0.13 -0.0
124,778 + EX31_RS04990 0.13 -0.1
124,778 + EX31_RS04990 0.13 -0.2
124,778 + EX31_RS04990 0.13 -1.0
124,778 + EX31_RS04990 0.13 -1.4
124,779 - EX31_RS04990 0.13 -2.2
124,779 - EX31_RS04990 0.13 -0.3
124,779 - EX31_RS04990 0.13 -1.4
124,779 - EX31_RS04990 0.13 -0.9
124,779 - EX31_RS04990 0.13 +0.2
124,864 + EX31_RS04990 0.23 +0.8
124,907 + EX31_RS04990 0.28 +0.9
124,907 + EX31_RS04990 0.28 +1.0
124,907 + EX31_RS04990 0.28 -1.0
124,907 + EX31_RS04990 0.28 -0.5
124,908 - EX31_RS04990 0.28 +0.7
124,999 - EX31_RS04990 0.39 +0.4
125,075 + EX31_RS04990 0.48 -2.0
125,076 - EX31_RS04990 0.48 -0.3
125,115 + EX31_RS04990 0.53 -1.1
125,131 - EX31_RS04990 0.55 -0.5
125,131 - EX31_RS04990 0.55 +0.5
125,284 + EX31_RS04990 0.73 -2.5
125,285 - EX31_RS04990 0.74 -2.6
125,285 - EX31_RS04990 0.74 +0.1
125,341 + EX31_RS04990 0.80 -0.2
125,341 + EX31_RS04990 0.80 -1.1
125,341 + EX31_RS04990 0.80 +0.2
125,341 + EX31_RS04990 0.80 -0.1
125,341 + EX31_RS04990 0.80 +0.0
125,341 + EX31_RS04990 0.80 +0.3
125,341 + EX31_RS04990 0.80 +1.3
125,341 + EX31_RS04990 0.80 +0.5
125,341 + EX31_RS04990 0.80 +0.3
125,342 - EX31_RS04990 0.80 -0.3
125,342 - EX31_RS04990 0.80 -1.9
125,342 - EX31_RS04990 0.80 +0.5
125,342 - EX31_RS04990 0.80 -0.9
125,342 - EX31_RS04990 0.80 +0.1
125,342 - EX31_RS04990 0.80 -0.7
125,342 - EX31_RS04990 0.80 +0.6
125,358 - EX31_RS04990 0.82 -0.2
125,397 + EX31_RS04990 0.87 -0.4
125,397 + EX31_RS04990 0.87 +0.5
125,397 + EX31_RS04990 0.87 +0.4
125,499 + +0.2
125,503 + -0.2
125,503 + +0.8
125,503 + +0.1
125,553 - -0.3
125,569 + -0.5
125,570 - +1.3
125,570 - +0.1
125,570 - -1.2
125,619 + EX31_RS04995 0.14 -0.2
125,620 - EX31_RS04995 0.14 -0.2
125,620 - EX31_RS04995 0.14 -1.5
125,655 + EX31_RS04995 0.18 -0.2
125,656 - EX31_RS04995 0.19 +0.4
125,713 + EX31_RS04995 0.26 -3.7
125,713 + EX31_RS04995 0.26 -1.1
125,713 + EX31_RS04995 0.26 -1.2
125,713 + EX31_RS04995 0.26 +0.7
125,713 + EX31_RS04995 0.26 +0.2
125,713 + EX31_RS04995 0.26 -0.1
125,714 - EX31_RS04995 0.26 -1.1
125,714 - EX31_RS04995 0.26 +1.0
125,714 - EX31_RS04995 0.26 -1.2
125,714 - EX31_RS04995 0.26 -0.9
125,714 - EX31_RS04995 0.26 -0.1
125,802 + EX31_RS04995 0.38 -1.2
125,803 - EX31_RS04995 0.38 +0.2
125,848 - EX31_RS04995 0.44 -0.9
125,853 + EX31_RS04995 0.45 +0.3
126,042 + EX31_RS04995 0.69 +0.5
126,043 - EX31_RS04995 0.70 +0.4
126,193 + EX31_RS04995 0.89 +0.2
126,193 + EX31_RS04995 0.89 -0.3
126,208 - -1.7
126,286 + -1.8
126,286 + -0.8
126,287 - +1.2
126,399 + -0.4
126,399 + -0.1
126,399 + -1.1
126,400 - -1.1
126,400 - -0.7
126,443 + +0.1
126,443 + -1.5
126,443 + -1.0
126,443 + -2.5
126,443 + -0.9
126,443 + -0.4
126,443 + +0.3
126,443 + -0.4
126,443 + +0.8
126,444 - +0.2
126,444 - -1.1
126,444 - -0.2
126,453 + +0.3
126,453 + -0.4
126,454 - -0.6
126,454 - +0.1

Or see this region's nucleotide sequence