Strain Fitness in Rahnella sp. WP5 around EX31_RS02345

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS02330 and EX31_RS02335 are separated by 183 nucleotidesEX31_RS02335 and EX31_RS02340 overlap by 56 nucleotidesEX31_RS02340 and EX31_RS02345 are separated by 99 nucleotidesEX31_RS02345 and EX31_RS02350 are separated by 110 nucleotides EX31_RS02330: EX31_RS02330 - hypothetical protein, at 503,330 to 503,569 _RS02330 EX31_RS02335: EX31_RS02335 - hypothetical protein, at 503,753 to 504,046 _RS02335 EX31_RS02340: EX31_RS02340 - hypothetical protein, at 503,991 to 504,362 _RS02340 EX31_RS02345: EX31_RS02345 - hypothetical protein, at 504,462 to 504,719 _RS02345 EX31_RS02350: EX31_RS02350 - diguanylate phosphodiesterase, at 504,830 to 506,071 _RS02350 Position (kb) 504 505Strain fitness (log2 ratio) -2 -1 0 1 2at 503.469 kb on + strand, within EX31_RS02330at 503.469 kb on + strand, within EX31_RS02330at 503.528 kb on + strand, within EX31_RS02330at 503.528 kb on + strand, within EX31_RS02330at 503.528 kb on + strand, within EX31_RS02330at 503.528 kb on + strand, within EX31_RS02330at 503.528 kb on + strand, within EX31_RS02330at 503.528 kb on + strand, within EX31_RS02330at 503.530 kb on + strand, within EX31_RS02330at 503.530 kb on + strand, within EX31_RS02330at 503.530 kb on + strand, within EX31_RS02330at 503.530 kb on + strand, within EX31_RS02330at 503.530 kb on + strand, within EX31_RS02330at 503.531 kb on - strand, within EX31_RS02330at 503.539 kb on + strand, within EX31_RS02330at 503.581 kb on + strandat 503.589 kb on + strandat 503.589 kb on + strandat 503.589 kb on + strandat 503.609 kb on + strandat 503.609 kb on + strandat 503.627 kb on + strandat 503.627 kb on + strandat 503.680 kb on + strandat 503.685 kb on + strandat 503.706 kb on + strandat 503.706 kb on + strandat 503.733 kb on + strandat 503.734 kb on - strandat 503.735 kb on + strandat 503.735 kb on + strandat 503.735 kb on + strandat 503.735 kb on + strandat 503.735 kb on + strandat 503.749 kb on + strandat 503.752 kb on + strandat 503.752 kb on + strandat 503.752 kb on + strandat 503.756 kb on + strandat 503.785 kb on + strand, within EX31_RS02335at 503.793 kb on + strand, within EX31_RS02335at 503.818 kb on + strand, within EX31_RS02335at 503.818 kb on + strand, within EX31_RS02335at 503.869 kb on + strand, within EX31_RS02335at 503.892 kb on + strand, within EX31_RS02335at 503.892 kb on + strand, within EX31_RS02335at 503.892 kb on + strand, within EX31_RS02335at 503.892 kb on + strand, within EX31_RS02335at 503.892 kb on + strand, within EX31_RS02335at 503.920 kb on + strand, within EX31_RS02335at 503.923 kb on + strand, within EX31_RS02335at 503.965 kb on + strand, within EX31_RS02335at 503.965 kb on + strand, within EX31_RS02335at 503.969 kb on + strand, within EX31_RS02335at 503.994 kb on + strandat 504.138 kb on + strand, within EX31_RS02340at 504.144 kb on + strand, within EX31_RS02340at 504.239 kb on + strand, within EX31_RS02340at 504.239 kb on + strand, within EX31_RS02340at 504.239 kb on + strand, within EX31_RS02340at 504.248 kb on + strand, within EX31_RS02340at 504.248 kb on + strand, within EX31_RS02340at 504.248 kb on + strand, within EX31_RS02340at 504.248 kb on + strand, within EX31_RS02340at 504.250 kb on + strand, within EX31_RS02340at 504.251 kb on - strand, within EX31_RS02340at 504.311 kb on + strand, within EX31_RS02340at 504.374 kb on + strandat 504.380 kb on + strandat 504.385 kb on + strandat 504.501 kb on + strand, within EX31_RS02345at 504.501 kb on + strand, within EX31_RS02345at 504.568 kb on + strand, within EX31_RS02345at 504.661 kb on + strand, within EX31_RS02345at 504.661 kb on + strand, within EX31_RS02345at 504.667 kb on + strand, within EX31_RS02345at 504.667 kb on + strand, within EX31_RS02345at 504.681 kb on + strand, within EX31_RS02345at 504.717 kb on + strandat 504.717 kb on + strandat 504.717 kb on + strandat 504.720 kb on + strandat 504.720 kb on + strandat 504.720 kb on + strandat 504.721 kb on - strandat 504.722 kb on + strandat 504.722 kb on + strandat 504.722 kb on + strandat 504.722 kb on + strandat 504.722 kb on + strandat 504.855 kb on + strandat 504.856 kb on - strandat 504.866 kb on - strandat 504.935 kb on - strandat 504.935 kb on - strandat 505.081 kb on + strand, within EX31_RS02350at 505.097 kb on - strand, within EX31_RS02350at 505.187 kb on - strand, within EX31_RS02350at 505.328 kb on + strand, within EX31_RS02350at 505.328 kb on + strand, within EX31_RS02350at 505.429 kb on - strand, within EX31_RS02350at 505.504 kb on - strand, within EX31_RS02350at 505.504 kb on - strand, within EX31_RS02350at 505.504 kb on - strand, within EX31_RS02350at 505.510 kb on + strand, within EX31_RS02350at 505.546 kb on - strand, within EX31_RS02350at 505.546 kb on - strand, within EX31_RS02350at 505.550 kb on - strand, within EX31_RS02350at 505.550 kb on - strand, within EX31_RS02350at 505.550 kb on - strand, within EX31_RS02350at 505.580 kb on - strand, within EX31_RS02350at 505.673 kb on + strand, within EX31_RS02350at 505.674 kb on - strand, within EX31_RS02350at 505.674 kb on - strand, within EX31_RS02350at 505.674 kb on - strand, within EX31_RS02350at 505.710 kb on + strand, within EX31_RS02350at 505.711 kb on - strand, within EX31_RS02350at 505.711 kb on - strand, within EX31_RS02350at 505.711 kb on - strand, within EX31_RS02350at 505.711 kb on - strand, within EX31_RS02350at 505.711 kb on - strand, within EX31_RS02350

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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503,469 + EX31_RS02330 0.58 -0.5
503,469 + EX31_RS02330 0.58 -0.9
503,528 + EX31_RS02330 0.82 -0.2
503,528 + EX31_RS02330 0.82 -0.1
503,528 + EX31_RS02330 0.82 -0.5
503,528 + EX31_RS02330 0.82 +0.4
503,528 + EX31_RS02330 0.82 -0.3
503,528 + EX31_RS02330 0.82 -0.0
503,530 + EX31_RS02330 0.83 -0.1
503,530 + EX31_RS02330 0.83 +0.4
503,530 + EX31_RS02330 0.83 +1.9
503,530 + EX31_RS02330 0.83 -1.3
503,530 + EX31_RS02330 0.83 -0.0
503,531 - EX31_RS02330 0.84 +1.3
503,539 + EX31_RS02330 0.87 -0.6
503,581 + -0.4
503,589 + +0.2
503,589 + +0.3
503,589 + +0.3
503,609 + -0.8
503,609 + +0.4
503,627 + +0.2
503,627 + +0.3
503,680 + -0.1
503,685 + -2.0
503,706 + -0.9
503,706 + -2.1
503,733 + +0.9
503,734 - +0.1
503,735 + -1.1
503,735 + +0.5
503,735 + -0.1
503,735 + -0.4
503,735 + -0.0
503,749 + -0.6
503,752 + -1.0
503,752 + +0.3
503,752 + -0.6
503,756 + -1.5
503,785 + EX31_RS02335 0.11 -0.1
503,793 + EX31_RS02335 0.14 -1.6
503,818 + EX31_RS02335 0.22 +1.3
503,818 + EX31_RS02335 0.22 -1.2
503,869 + EX31_RS02335 0.39 -1.4
503,892 + EX31_RS02335 0.47 -1.5
503,892 + EX31_RS02335 0.47 -0.3
503,892 + EX31_RS02335 0.47 +0.3
503,892 + EX31_RS02335 0.47 +0.0
503,892 + EX31_RS02335 0.47 -0.6
503,920 + EX31_RS02335 0.57 -0.5
503,923 + EX31_RS02335 0.58 -1.2
503,965 + EX31_RS02335 0.72 -0.6
503,965 + EX31_RS02335 0.72 -1.0
503,969 + EX31_RS02335 0.73 -0.8
503,994 + +2.2
504,138 + EX31_RS02340 0.40 -2.2
504,144 + EX31_RS02340 0.41 -0.2
504,239 + EX31_RS02340 0.67 +1.2
504,239 + EX31_RS02340 0.67 -1.9
504,239 + EX31_RS02340 0.67 -0.2
504,248 + EX31_RS02340 0.69 +0.3
504,248 + EX31_RS02340 0.69 -1.8
504,248 + EX31_RS02340 0.69 -0.0
504,248 + EX31_RS02340 0.69 +0.2
504,250 + EX31_RS02340 0.70 -1.1
504,251 - EX31_RS02340 0.70 -0.1
504,311 + EX31_RS02340 0.86 -1.0
504,374 + +0.9
504,380 + -1.0
504,385 + +1.3
504,501 + EX31_RS02345 0.15 +0.2
504,501 + EX31_RS02345 0.15 -1.6
504,568 + EX31_RS02345 0.41 -1.8
504,661 + EX31_RS02345 0.77 -1.1
504,661 + EX31_RS02345 0.77 +0.3
504,667 + EX31_RS02345 0.79 +0.0
504,667 + EX31_RS02345 0.79 -1.7
504,681 + EX31_RS02345 0.85 -0.6
504,717 + -0.3
504,717 + -0.1
504,717 + +0.5
504,720 + -1.3
504,720 + +0.7
504,720 + -0.3
504,721 - -0.1
504,722 + -1.1
504,722 + +0.1
504,722 + -1.9
504,722 + -0.1
504,722 + +0.2
504,855 + -0.6
504,856 - -0.3
504,866 - -2.0
504,935 - +0.4
504,935 - -0.9
505,081 + EX31_RS02350 0.20 -0.8
505,097 - EX31_RS02350 0.21 +0.8
505,187 - EX31_RS02350 0.29 +2.3
505,328 + EX31_RS02350 0.40 +1.5
505,328 + EX31_RS02350 0.40 -2.3
505,429 - EX31_RS02350 0.48 -0.9
505,504 - EX31_RS02350 0.54 -0.5
505,504 - EX31_RS02350 0.54 -0.7
505,504 - EX31_RS02350 0.54 +1.6
505,510 + EX31_RS02350 0.55 -0.2
505,546 - EX31_RS02350 0.58 +1.0
505,546 - EX31_RS02350 0.58 +0.5
505,550 - EX31_RS02350 0.58 +0.2
505,550 - EX31_RS02350 0.58 -0.7
505,550 - EX31_RS02350 0.58 -1.7
505,580 - EX31_RS02350 0.60 +1.6
505,673 + EX31_RS02350 0.68 -0.9
505,674 - EX31_RS02350 0.68 -0.1
505,674 - EX31_RS02350 0.68 +1.6
505,674 - EX31_RS02350 0.68 -0.1
505,710 + EX31_RS02350 0.71 -0.4
505,711 - EX31_RS02350 0.71 -1.0
505,711 - EX31_RS02350 0.71 +0.5
505,711 - EX31_RS02350 0.71 +1.1
505,711 - EX31_RS02350 0.71 +0.6
505,711 - EX31_RS02350 0.71 -0.3

Or see this region's nucleotide sequence