Strain Fitness in Rahnella sp. WP5 around EX31_RS22275

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS22265 and EX31_RS22270 are separated by 139 nucleotidesEX31_RS22270 and EX31_RS22275 are separated by 118 nucleotidesEX31_RS22275 and EX31_RS22280 are separated by 97 nucleotidesEX31_RS22280 and EX31_RS22285 are separated by 110 nucleotides EX31_RS22265: EX31_RS22265 - peptidylprolyl isomerase, at 204,308 to 206,188 _RS22265 EX31_RS22270: EX31_RS22270 - competence protein ComEA, at 206,328 to 206,711 _RS22270 EX31_RS22275: EX31_RS22275 - YbgC/FadM family acyl-CoA thioesterase, at 206,830 to 207,231 _RS22275 EX31_RS22280: EX31_RS22280 - 7-cyano-7-deazaguanine synthase QueC, at 207,329 to 208,027 _RS22280 EX31_RS22285: EX31_RS22285 - peptide ABC transporter substrate-binding protein, at 208,138 to 209,850 _RS22285 Position (kb) 206 207 208Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 205.908 kb on + strand, within EX31_RS22265at 205.908 kb on + strand, within EX31_RS22265at 206.068 kb on + strandat 206.068 kb on + strandat 206.162 kb on + strandat 206.186 kb on + strandat 206.322 kb on + strandat 206.323 kb on - strandat 206.608 kb on - strand, within EX31_RS22270at 206.630 kb on + strand, within EX31_RS22270at 206.687 kb on + strandat 206.688 kb on - strandat 206.688 kb on - strandat 206.688 kb on - strandat 206.793 kb on + strandat 206.793 kb on + strandat 206.794 kb on - strandat 206.794 kb on - strandat 206.829 kb on + strandat 206.830 kb on - strandat 206.835 kb on + strandat 206.835 kb on + strandat 206.836 kb on - strandat 206.836 kb on - strandat 206.836 kb on - strandat 206.836 kb on - strandat 206.845 kb on - strandat 206.882 kb on + strand, within EX31_RS22275at 206.882 kb on + strand, within EX31_RS22275at 206.883 kb on - strand, within EX31_RS22275at 206.883 kb on - strand, within EX31_RS22275at 206.994 kb on + strand, within EX31_RS22275at 206.995 kb on - strand, within EX31_RS22275at 207.008 kb on - strand, within EX31_RS22275at 207.024 kb on - strand, within EX31_RS22275at 207.273 kb on - strandat 207.376 kb on + strandat 207.377 kb on - strandat 207.388 kb on - strandat 207.411 kb on - strand, within EX31_RS22280at 207.459 kb on + strand, within EX31_RS22280at 207.502 kb on - strand, within EX31_RS22280at 207.502 kb on - strand, within EX31_RS22280at 207.502 kb on - strand, within EX31_RS22280at 207.532 kb on + strand, within EX31_RS22280at 207.696 kb on + strand, within EX31_RS22280at 207.696 kb on + strand, within EX31_RS22280at 207.696 kb on + strand, within EX31_RS22280at 207.696 kb on + strand, within EX31_RS22280at 207.696 kb on + strand, within EX31_RS22280at 207.697 kb on - strand, within EX31_RS22280at 207.697 kb on - strand, within EX31_RS22280at 207.697 kb on - strand, within EX31_RS22280at 207.697 kb on - strand, within EX31_RS22280at 207.697 kb on - strand, within EX31_RS22280at 207.697 kb on - strand, within EX31_RS22280at 207.697 kb on - strand, within EX31_RS22280at 207.697 kb on - strand, within EX31_RS22280at 207.697 kb on - strand, within EX31_RS22280at 207.697 kb on - strand, within EX31_RS22280at 207.697 kb on - strand, within EX31_RS22280at 207.697 kb on - strand, within EX31_RS22280at 207.697 kb on - strand, within EX31_RS22280at 207.697 kb on - strand, within EX31_RS22280at 207.697 kb on - strand, within EX31_RS22280at 207.697 kb on - strand, within EX31_RS22280at 207.697 kb on - strand, within EX31_RS22280at 207.697 kb on - strand, within EX31_RS22280at 207.724 kb on + strand, within EX31_RS22280at 207.725 kb on - strand, within EX31_RS22280at 207.728 kb on - strand, within EX31_RS22280at 207.745 kb on + strand, within EX31_RS22280at 207.746 kb on - strand, within EX31_RS22280at 207.831 kb on - strand, within EX31_RS22280at 207.854 kb on - strand, within EX31_RS22280at 207.854 kb on - strand, within EX31_RS22280at 207.854 kb on - strand, within EX31_RS22280at 207.924 kb on + strand, within EX31_RS22280at 207.925 kb on - strand, within EX31_RS22280at 207.935 kb on - strand, within EX31_RS22280at 207.955 kb on - strand, within EX31_RS22280at 207.955 kb on - strand, within EX31_RS22280at 207.955 kb on - strand, within EX31_RS22280at 207.955 kb on - strand, within EX31_RS22280at 208.055 kb on - strandat 208.082 kb on + strandat 208.082 kb on + strandat 208.083 kb on - strandat 208.099 kb on + strandat 208.099 kb on + strandat 208.123 kb on - strandat 208.123 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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205,908 + EX31_RS22265 0.85 -0.7
205,908 + EX31_RS22265 0.85 +0.0
206,068 + +1.3
206,068 + +0.2
206,162 + +1.0
206,186 + -0.3
206,322 + -0.6
206,323 - -1.0
206,608 - EX31_RS22270 0.73 -2.0
206,630 + EX31_RS22270 0.79 +0.7
206,687 + -0.6
206,688 - -0.3
206,688 - +0.0
206,688 - -1.8
206,793 + -3.4
206,793 + +2.3
206,794 - -0.5
206,794 - +0.4
206,829 + +0.4
206,830 - -0.2
206,835 + +0.2
206,835 + +0.6
206,836 - -0.8
206,836 - -0.2
206,836 - +0.1
206,836 - -1.6
206,845 - +1.1
206,882 + EX31_RS22275 0.13 -1.4
206,882 + EX31_RS22275 0.13 -0.5
206,883 - EX31_RS22275 0.13 -0.5
206,883 - EX31_RS22275 0.13 -1.0
206,994 + EX31_RS22275 0.41 -0.6
206,995 - EX31_RS22275 0.41 -2.0
207,008 - EX31_RS22275 0.44 -0.1
207,024 - EX31_RS22275 0.48 -0.8
207,273 - -0.1
207,376 + +0.4
207,377 - +0.5
207,388 - +0.4
207,411 - EX31_RS22280 0.12 -0.7
207,459 + EX31_RS22280 0.19 +2.3
207,502 - EX31_RS22280 0.25 -1.1
207,502 - EX31_RS22280 0.25 +0.1
207,502 - EX31_RS22280 0.25 +1.9
207,532 + EX31_RS22280 0.29 +0.1
207,696 + EX31_RS22280 0.53 +0.3
207,696 + EX31_RS22280 0.53 -2.0
207,696 + EX31_RS22280 0.53 -1.1
207,696 + EX31_RS22280 0.53 +1.6
207,696 + EX31_RS22280 0.53 -3.1
207,697 - EX31_RS22280 0.53 +0.5
207,697 - EX31_RS22280 0.53 +2.0
207,697 - EX31_RS22280 0.53 +2.0
207,697 - EX31_RS22280 0.53 -0.5
207,697 - EX31_RS22280 0.53 +1.2
207,697 - EX31_RS22280 0.53 -1.9
207,697 - EX31_RS22280 0.53 +1.0
207,697 - EX31_RS22280 0.53 -0.3
207,697 - EX31_RS22280 0.53 -0.8
207,697 - EX31_RS22280 0.53 -2.0
207,697 - EX31_RS22280 0.53 -0.7
207,697 - EX31_RS22280 0.53 +0.9
207,697 - EX31_RS22280 0.53 +0.3
207,697 - EX31_RS22280 0.53 -0.2
207,697 - EX31_RS22280 0.53 +0.4
207,697 - EX31_RS22280 0.53 +1.2
207,697 - EX31_RS22280 0.53 +1.2
207,697 - EX31_RS22280 0.53 -0.7
207,724 + EX31_RS22280 0.57 +0.4
207,725 - EX31_RS22280 0.57 -0.5
207,728 - EX31_RS22280 0.57 -0.6
207,745 + EX31_RS22280 0.60 -0.2
207,746 - EX31_RS22280 0.60 -1.9
207,831 - EX31_RS22280 0.72 -0.4
207,854 - EX31_RS22280 0.75 +0.1
207,854 - EX31_RS22280 0.75 -0.0
207,854 - EX31_RS22280 0.75 +1.3
207,924 + EX31_RS22280 0.85 +0.8
207,925 - EX31_RS22280 0.85 +0.3
207,935 - EX31_RS22280 0.87 +1.2
207,955 - EX31_RS22280 0.90 +0.9
207,955 - EX31_RS22280 0.90 +0.1
207,955 - EX31_RS22280 0.90 +0.6
207,955 - EX31_RS22280 0.90 +1.0
208,055 - -2.0
208,082 + -1.8
208,082 + +0.2
208,083 - -0.2
208,099 + -0.4
208,099 + -0.7
208,123 - -0.6
208,123 - -0.2

Or see this region's nucleotide sequence