Strain Fitness in Rahnella sp. WP5 around EX31_RS19395

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS19385 and EX31_RS19390 overlap by 4 nucleotidesEX31_RS19390 and EX31_RS19395 overlap by 4 nucleotidesEX31_RS19395 and EX31_RS19400 are separated by 12 nucleotidesEX31_RS19400 and EX31_RS19405 are separated by 14 nucleotides EX31_RS19385: EX31_RS19385 - NADH-quinone oxidoreductase subunit L, at 504,251 to 506,098 _RS19385 EX31_RS19390: EX31_RS19390 - NADH-quinone oxidoreductase subunit NuoK, at 506,095 to 506,397 _RS19390 EX31_RS19395: EX31_RS19395 - NADH-quinone oxidoreductase subunit J, at 506,394 to 506,954 _RS19395 EX31_RS19400: EX31_RS19400 - NADH-quinone oxidoreductase subunit NuoI, at 506,967 to 507,509 _RS19400 EX31_RS19405: EX31_RS19405 - NADH-quinone oxidoreductase subunit NuoH, at 507,524 to 508,501 _RS19405 Position (kb) 506 507Strain fitness (log2 ratio) -2 -1 0 1 2 3at 505.617 kb on + strand, within EX31_RS19385at 505.618 kb on - strand, within EX31_RS19385at 505.639 kb on - strand, within EX31_RS19385at 505.671 kb on + strand, within EX31_RS19385at 505.671 kb on + strand, within EX31_RS19385at 505.672 kb on - strand, within EX31_RS19385at 505.672 kb on - strand, within EX31_RS19385at 505.773 kb on + strand, within EX31_RS19385at 505.773 kb on + strand, within EX31_RS19385at 505.774 kb on - strand, within EX31_RS19385at 505.959 kb on + strandat 505.960 kb on - strandat 505.963 kb on + strandat 505.963 kb on + strandat 505.964 kb on - strandat 506.085 kb on + strandat 506.085 kb on + strandat 506.086 kb on - strandat 506.119 kb on - strandat 506.212 kb on - strand, within EX31_RS19390at 506.213 kb on + strand, within EX31_RS19390at 506.213 kb on + strand, within EX31_RS19390at 506.214 kb on - strand, within EX31_RS19390at 506.214 kb on - strand, within EX31_RS19390at 506.214 kb on - strand, within EX31_RS19390at 506.214 kb on - strand, within EX31_RS19390at 506.214 kb on - strand, within EX31_RS19390at 506.214 kb on - strand, within EX31_RS19390at 506.243 kb on + strand, within EX31_RS19390at 506.244 kb on - strand, within EX31_RS19390at 506.244 kb on - strand, within EX31_RS19390at 506.308 kb on - strand, within EX31_RS19390at 506.308 kb on - strand, within EX31_RS19390at 506.745 kb on + strand, within EX31_RS19395at 506.766 kb on - strand, within EX31_RS19395at 506.781 kb on + strand, within EX31_RS19395at 506.782 kb on - strand, within EX31_RS19395at 506.810 kb on - strand, within EX31_RS19395at 506.863 kb on + strand, within EX31_RS19395at 506.863 kb on + strand, within EX31_RS19395at 506.864 kb on - strand, within EX31_RS19395at 506.937 kb on - strandat 506.938 kb on + strandat 506.939 kb on - strandat 507.068 kb on - strand, within EX31_RS19400at 507.116 kb on - strand, within EX31_RS19400at 507.287 kb on + strand, within EX31_RS19400at 507.287 kb on + strand, within EX31_RS19400at 507.306 kb on + strand, within EX31_RS19400at 507.307 kb on - strand, within EX31_RS19400at 507.321 kb on - strand, within EX31_RS19400at 507.413 kb on - strand, within EX31_RS19400at 507.451 kb on - strand, within EX31_RS19400at 507.493 kb on - strandat 507.513 kb on + strandat 507.513 kb on + strandat 507.513 kb on + strandat 507.513 kb on + strandat 507.513 kb on + strandat 507.513 kb on + strandat 507.514 kb on - strandat 507.514 kb on - strandat 507.514 kb on - strandat 507.525 kb on + strandat 507.526 kb on - strandat 507.568 kb on + strandat 507.569 kb on - strandat 507.569 kb on - strandat 507.573 kb on - strandat 507.573 kb on - strandat 507.573 kb on - strandat 507.777 kb on + strand, within EX31_RS19405at 507.777 kb on + strand, within EX31_RS19405at 507.778 kb on - strand, within EX31_RS19405at 507.778 kb on - strand, within EX31_RS19405at 507.778 kb on - strand, within EX31_RS19405

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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505,617 + EX31_RS19385 0.74 +1.4
505,618 - EX31_RS19385 0.74 +1.0
505,639 - EX31_RS19385 0.75 +0.2
505,671 + EX31_RS19385 0.77 +0.6
505,671 + EX31_RS19385 0.77 +0.9
505,672 - EX31_RS19385 0.77 -1.0
505,672 - EX31_RS19385 0.77 +0.3
505,773 + EX31_RS19385 0.82 +0.5
505,773 + EX31_RS19385 0.82 -0.2
505,774 - EX31_RS19385 0.82 -1.2
505,959 + -1.5
505,960 - -0.3
505,963 + -0.1
505,963 + +0.0
505,964 - -0.5
506,085 + -1.4
506,085 + +0.1
506,086 - -0.1
506,119 - -2.4
506,212 - EX31_RS19390 0.39 -1.4
506,213 + EX31_RS19390 0.39 -1.5
506,213 + EX31_RS19390 0.39 +0.2
506,214 - EX31_RS19390 0.39 -2.0
506,214 - EX31_RS19390 0.39 -0.1
506,214 - EX31_RS19390 0.39 -0.9
506,214 - EX31_RS19390 0.39 -0.8
506,214 - EX31_RS19390 0.39 +0.5
506,214 - EX31_RS19390 0.39 +1.1
506,243 + EX31_RS19390 0.49 -0.8
506,244 - EX31_RS19390 0.49 -0.0
506,244 - EX31_RS19390 0.49 -0.3
506,308 - EX31_RS19390 0.70 +0.1
506,308 - EX31_RS19390 0.70 -0.3
506,745 + EX31_RS19395 0.63 +0.5
506,766 - EX31_RS19395 0.66 -0.5
506,781 + EX31_RS19395 0.69 +0.7
506,782 - EX31_RS19395 0.69 +0.8
506,810 - EX31_RS19395 0.74 -0.9
506,863 + EX31_RS19395 0.84 -0.4
506,863 + EX31_RS19395 0.84 -0.4
506,864 - EX31_RS19395 0.84 +1.0
506,937 - +1.3
506,938 + -1.6
506,939 - +1.1
507,068 - EX31_RS19400 0.19 -1.0
507,116 - EX31_RS19400 0.27 +2.8
507,287 + EX31_RS19400 0.59 -0.8
507,287 + EX31_RS19400 0.59 +2.0
507,306 + EX31_RS19400 0.62 +1.7
507,307 - EX31_RS19400 0.63 -0.8
507,321 - EX31_RS19400 0.65 +0.1
507,413 - EX31_RS19400 0.82 +1.5
507,451 - EX31_RS19400 0.89 +0.9
507,493 - +0.8
507,513 + -0.3
507,513 + -0.3
507,513 + -2.2
507,513 + +0.7
507,513 + -1.7
507,513 + -0.1
507,514 - +0.5
507,514 - +1.1
507,514 - +0.3
507,525 + -0.4
507,526 - +0.4
507,568 + +1.5
507,569 - -0.1
507,569 - -0.9
507,573 - +2.2
507,573 - -1.9
507,573 - +1.1
507,777 + EX31_RS19405 0.26 -1.4
507,777 + EX31_RS19405 0.26 +1.8
507,778 - EX31_RS19405 0.26 +0.9
507,778 - EX31_RS19405 0.26 +0.2
507,778 - EX31_RS19405 0.26 -0.1

Or see this region's nucleotide sequence