Strain Fitness in Rahnella sp. WP5 around EX31_RS17030

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS17025 and EX31_RS17030 are separated by 307 nucleotides EX31_RS17025: EX31_RS17025 - FadR family transcriptional regulator, at 16,090 to 16,803 _RS17025 EX31_RS17030: EX31_RS17030 - FAD-dependent oxidoreductase, at 17,111 to 18,319 _RS17030 Position (kb) 17 18 19Strain fitness (log2 ratio) -1 0 1at 16.132 kb on + strandat 16.133 kb on - strandat 16.154 kb on - strandat 16.198 kb on + strand, within EX31_RS17025at 16.277 kb on + strand, within EX31_RS17025at 16.277 kb on + strand, within EX31_RS17025at 16.325 kb on + strand, within EX31_RS17025at 16.405 kb on - strand, within EX31_RS17025at 16.522 kb on - strand, within EX31_RS17025at 16.522 kb on - strand, within EX31_RS17025at 16.724 kb on + strand, within EX31_RS17025at 16.724 kb on + strand, within EX31_RS17025at 16.725 kb on - strand, within EX31_RS17025at 16.725 kb on - strand, within EX31_RS17025at 16.783 kb on + strandat 16.783 kb on + strandat 16.784 kb on - strandat 16.789 kb on + strandat 16.790 kb on - strandat 16.790 kb on - strandat 17.033 kb on + strandat 17.033 kb on + strandat 17.033 kb on + strandat 17.033 kb on + strandat 17.033 kb on + strandat 17.179 kb on - strandat 17.189 kb on + strandat 17.281 kb on + strand, within EX31_RS17030at 17.282 kb on - strand, within EX31_RS17030at 17.425 kb on + strand, within EX31_RS17030at 17.537 kb on - strand, within EX31_RS17030at 17.537 kb on - strand, within EX31_RS17030at 17.537 kb on - strand, within EX31_RS17030at 17.688 kb on + strand, within EX31_RS17030at 17.928 kb on + strand, within EX31_RS17030at 17.928 kb on + strand, within EX31_RS17030at 17.929 kb on - strand, within EX31_RS17030at 18.074 kb on - strand, within EX31_RS17030at 18.120 kb on + strand, within EX31_RS17030at 18.178 kb on + strand, within EX31_RS17030at 18.179 kb on - strand, within EX31_RS17030at 18.188 kb on - strand, within EX31_RS17030at 18.257 kb on - strandat 18.259 kb on - strandat 18.354 kb on + strandat 18.355 kb on - strandat 18.360 kb on + strandat 18.403 kb on + strandat 18.409 kb on + strandat 18.409 kb on + strandat 18.446 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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16,132 + +0.8
16,133 - -0.4
16,154 - -0.8
16,198 + EX31_RS17025 0.15 +0.7
16,277 + EX31_RS17025 0.26 +0.2
16,277 + EX31_RS17025 0.26 -0.6
16,325 + EX31_RS17025 0.33 -0.9
16,405 - EX31_RS17025 0.44 -1.2
16,522 - EX31_RS17025 0.61 -0.2
16,522 - EX31_RS17025 0.61 -0.1
16,724 + EX31_RS17025 0.89 +0.8
16,724 + EX31_RS17025 0.89 -0.3
16,725 - EX31_RS17025 0.89 +0.0
16,725 - EX31_RS17025 0.89 +0.4
16,783 + +0.1
16,783 + +0.2
16,784 - +0.1
16,789 + -0.0
16,790 - +1.5
16,790 - +0.0
17,033 + -0.0
17,033 + -0.2
17,033 + -1.0
17,033 + -0.4
17,033 + +0.0
17,179 - +0.5
17,189 + -0.2
17,281 + EX31_RS17030 0.14 +0.8
17,282 - EX31_RS17030 0.14 +0.8
17,425 + EX31_RS17030 0.26 +1.5
17,537 - EX31_RS17030 0.35 -0.9
17,537 - EX31_RS17030 0.35 -0.1
17,537 - EX31_RS17030 0.35 -1.1
17,688 + EX31_RS17030 0.48 +0.3
17,928 + EX31_RS17030 0.68 -0.0
17,928 + EX31_RS17030 0.68 -0.1
17,929 - EX31_RS17030 0.68 +0.4
18,074 - EX31_RS17030 0.80 -0.4
18,120 + EX31_RS17030 0.83 +1.1
18,178 + EX31_RS17030 0.88 +0.5
18,179 - EX31_RS17030 0.88 +1.0
18,188 - EX31_RS17030 0.89 +0.1
18,257 - +0.4
18,259 - -0.5
18,354 + -0.6
18,355 - +0.5
18,360 + -1.6
18,403 + +0.3
18,409 + +0.5
18,409 + -0.8
18,446 - +0.7

Or see this region's nucleotide sequence