Experiment: MGL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS16415 and EX31_RS16420 are separated by 377 nucleotides EX31_RS16420 and EX31_RS16425 are separated by 9 nucleotides EX31_RS16425 and EX31_RS16430 are separated by 228 nucleotides
EX31_RS16415: EX31_RS16415 - IS110 family transposase, at 34,369 to 35,607
_RS16415
EX31_RS16420: EX31_RS16420 - DUF3290 domain-containing protein, at 35,985 to 36,431
_RS16420
EX31_RS16425: EX31_RS16425 - DUF421 domain-containing protein, at 36,441 to 37,076
_RS16425
EX31_RS16430: EX31_RS16430 - IS1182 family transposase, at 37,305 to 38,747
_RS16430
Position (kb) 36
37
38 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 35.508 kb on - strand at 35.546 kb on - strand at 35.561 kb on - strand at 35.561 kb on - strand at 35.561 kb on - strand at 35.649 kb on + strand at 35.650 kb on - strand at 35.650 kb on - strand at 35.650 kb on - strand at 35.650 kb on - strand at 35.650 kb on - strand at 35.650 kb on - strand at 35.726 kb on + strand at 35.729 kb on + strand at 35.729 kb on + strand at 35.729 kb on + strand at 35.729 kb on + strand at 35.729 kb on + strand at 35.729 kb on + strand at 35.729 kb on + strand at 35.729 kb on + strand at 35.729 kb on + strand at 35.729 kb on + strand at 35.730 kb on - strand at 35.730 kb on - strand at 35.730 kb on - strand at 35.730 kb on - strand at 35.730 kb on - strand at 35.730 kb on - strand at 35.730 kb on - strand at 35.730 kb on - strand at 35.730 kb on - strand at 35.730 kb on - strand at 35.730 kb on - strand at 35.730 kb on - strand at 35.730 kb on - strand at 35.730 kb on - strand at 35.730 kb on - strand at 35.730 kb on - strand at 35.731 kb on + strand at 35.744 kb on + strand at 35.748 kb on + strand at 35.748 kb on + strand at 35.748 kb on + strand at 35.748 kb on + strand at 35.749 kb on - strand at 35.749 kb on - strand at 35.749 kb on - strand at 35.749 kb on - strand at 35.749 kb on - strand at 35.751 kb on + strand at 35.751 kb on + strand at 35.751 kb on + strand at 35.752 kb on - strand at 35.752 kb on - strand at 35.752 kb on - strand at 35.752 kb on - strand at 35.752 kb on - strand at 35.752 kb on - strand at 35.898 kb on + strand at 35.898 kb on + strand at 35.899 kb on - strand at 35.901 kb on + strand at 35.902 kb on - strand at 35.902 kb on - strand at 35.941 kb on + strand at 35.942 kb on - strand at 35.944 kb on + strand at 35.945 kb on - strand at 35.978 kb on + strand at 35.982 kb on + strand at 35.982 kb on + strand at 35.982 kb on + strand at 35.983 kb on - strand at 35.983 kb on - strand at 35.983 kb on - strand at 35.983 kb on - strand at 35.984 kb on + strand at 35.984 kb on + strand at 35.984 kb on + strand at 35.984 kb on + strand at 35.984 kb on + strand at 35.985 kb on - strand at 36.011 kb on - strand at 36.036 kb on + strand, within EX31_RS16420 at 36.123 kb on + strand, within EX31_RS16420 at 36.133 kb on + strand, within EX31_RS16420 at 36.281 kb on + strand, within EX31_RS16420 at 36.283 kb on + strand, within EX31_RS16420 at 36.284 kb on - strand, within EX31_RS16420 at 36.314 kb on + strand, within EX31_RS16420 at 36.375 kb on + strand, within EX31_RS16420 at 36.382 kb on + strand, within EX31_RS16420 at 36.445 kb on + strand at 36.459 kb on - strand at 36.583 kb on + strand, within EX31_RS16425 at 36.583 kb on + strand, within EX31_RS16425 at 36.583 kb on + strand, within EX31_RS16425 at 36.583 kb on + strand, within EX31_RS16425 at 36.583 kb on + strand, within EX31_RS16425 at 36.583 kb on + strand, within EX31_RS16425 at 36.583 kb on + strand, within EX31_RS16425 at 36.584 kb on - strand, within EX31_RS16425 at 36.592 kb on + strand, within EX31_RS16425 at 36.616 kb on + strand, within EX31_RS16425 at 36.879 kb on - strand, within EX31_RS16425 at 36.880 kb on + strand, within EX31_RS16425 at 36.936 kb on + strand, within EX31_RS16425 at 37.023 kb on + strand at 37.171 kb on - strand at 37.171 kb on - strand at 37.201 kb on + strand at 37.214 kb on + strand at 37.214 kb on + strand at 37.214 kb on + strand at 37.214 kb on + strand at 37.214 kb on + strand at 37.215 kb on - strand at 37.216 kb on + strand at 37.217 kb on - strand at 37.235 kb on + strand at 37.279 kb on + strand at 37.279 kb on + strand at 37.280 kb on - strand at 37.320 kb on - strand at 37.400 kb on + strand at 37.400 kb on + strand at 37.400 kb on + strand at 37.401 kb on - strand at 37.401 kb on - strand at 37.401 kb on - strand at 37.423 kb on + strand at 37.509 kb on + strand, within EX31_RS16430 at 37.509 kb on + strand, within EX31_RS16430 at 37.509 kb on + strand, within EX31_RS16430 at 37.510 kb on - strand, within EX31_RS16430 at 37.515 kb on + strand, within EX31_RS16430 at 37.515 kb on + strand, within EX31_RS16430 at 37.516 kb on - strand, within EX31_RS16430 at 37.571 kb on + strand, within EX31_RS16430 at 37.571 kb on + strand, within EX31_RS16430 at 37.591 kb on + strand, within EX31_RS16430 at 37.603 kb on + strand, within EX31_RS16430 at 37.616 kb on + strand, within EX31_RS16430 at 37.649 kb on + strand, within EX31_RS16430 at 37.649 kb on + strand, within EX31_RS16430 at 37.650 kb on - strand, within EX31_RS16430 at 37.736 kb on + strand, within EX31_RS16430 at 37.739 kb on + strand, within EX31_RS16430 at 37.739 kb on + strand, within EX31_RS16430 at 37.739 kb on + strand, within EX31_RS16430 at 37.739 kb on + strand, within EX31_RS16430 at 37.739 kb on + strand, within EX31_RS16430 at 37.740 kb on - strand, within EX31_RS16430 at 37.740 kb on - strand, within EX31_RS16430 at 37.740 kb on - strand, within EX31_RS16430 at 37.740 kb on - strand, within EX31_RS16430 at 37.753 kb on + strand, within EX31_RS16430 at 37.821 kb on - strand, within EX31_RS16430 at 37.830 kb on + strand, within EX31_RS16430 at 37.970 kb on + strand, within EX31_RS16430 at 37.971 kb on - strand, within EX31_RS16430 at 38.036 kb on + strand, within EX31_RS16430 at 38.036 kb on + strand, within EX31_RS16430 at 38.040 kb on + strand, within EX31_RS16430 at 38.040 kb on + strand, within EX31_RS16430 at 38.040 kb on + strand, within EX31_RS16430 at 38.040 kb on + strand, within EX31_RS16430 at 38.040 kb on + strand, within EX31_RS16430 at 38.040 kb on + strand, within EX31_RS16430 at 38.040 kb on + strand, within EX31_RS16430 at 38.040 kb on + strand, within EX31_RS16430 at 38.040 kb on + strand, within EX31_RS16430 at 38.040 kb on + strand, within EX31_RS16430 at 38.041 kb on - strand, within EX31_RS16430 at 38.041 kb on - strand, within EX31_RS16430 at 38.041 kb on - strand, within EX31_RS16430 at 38.043 kb on - strand, within EX31_RS16430 at 38.070 kb on + strand, within EX31_RS16430 at 38.070 kb on + strand, within EX31_RS16430 at 38.071 kb on - strand, within EX31_RS16430
Per-strain Table
Position Strand Gene LocusTag Fraction MGL remove 35,508 - +0.0 35,546 - -0.6 35,561 - -1.2 35,561 - -0.0 35,561 - +0.2 35,649 + +0.6 35,650 - -1.0 35,650 - -0.8 35,650 - -0.1 35,650 - +1.1 35,650 - +0.6 35,650 - -1.8 35,726 + -0.3 35,729 + -0.6 35,729 + -0.5 35,729 + -1.5 35,729 + -1.1 35,729 + -0.7 35,729 + -0.0 35,729 + -1.1 35,729 + -0.6 35,729 + -0.1 35,729 + +0.2 35,730 - +0.2 35,730 - -0.2 35,730 - -0.2 35,730 - -0.3 35,730 - -1.8 35,730 - +0.7 35,730 - +0.6 35,730 - +0.3 35,730 - -1.0 35,730 - +0.8 35,730 - -0.7 35,730 - -1.8 35,730 - -0.2 35,730 - +0.5 35,730 - -0.0 35,730 - -0.6 35,731 + -0.2 35,744 + -0.1 35,748 + -0.1 35,748 + -0.1 35,748 + -1.0 35,748 + -0.6 35,749 - -0.4 35,749 - +0.4 35,749 - +0.2 35,749 - +0.9 35,749 - -1.3 35,751 + +0.4 35,751 + +0.4 35,751 + -0.7 35,752 - -1.6 35,752 - -0.8 35,752 - -0.4 35,752 - +0.2 35,752 - +0.2 35,752 - +1.4 35,898 + -0.7 35,898 + -0.2 35,899 - -1.4 35,901 + -0.1 35,902 - -0.6 35,902 - +0.2 35,941 + -0.3 35,942 - +1.0 35,944 + +0.0 35,945 - -1.3 35,978 + +0.9 35,982 + -0.3 35,982 + -1.8 35,982 + +0.2 35,983 - +0.2 35,983 - +0.4 35,983 - -0.7 35,983 - -0.0 35,984 + -0.7 35,984 + -0.2 35,984 + -0.1 35,984 + +0.2 35,984 + -0.2 35,985 - +0.2 36,011 - +0.2 36,036 + EX31_RS16420 0.11 -1.4 36,123 + EX31_RS16420 0.31 -0.8 36,133 + EX31_RS16420 0.33 +0.5 36,281 + EX31_RS16420 0.66 -1.1 36,283 + EX31_RS16420 0.67 -0.6 36,284 - EX31_RS16420 0.67 -0.5 36,314 + EX31_RS16420 0.74 -1.1 36,375 + EX31_RS16420 0.87 -0.5 36,382 + EX31_RS16420 0.89 -0.5 36,445 + +1.5 36,459 - +1.4 36,583 + EX31_RS16425 0.22 -1.8 36,583 + EX31_RS16425 0.22 +0.4 36,583 + EX31_RS16425 0.22 -1.5 36,583 + EX31_RS16425 0.22 -0.4 36,583 + EX31_RS16425 0.22 -1.7 36,583 + EX31_RS16425 0.22 +0.3 36,583 + EX31_RS16425 0.22 -0.3 36,584 - EX31_RS16425 0.22 -1.3 36,592 + EX31_RS16425 0.24 -0.6 36,616 + EX31_RS16425 0.28 -0.5 36,879 - EX31_RS16425 0.69 -0.3 36,880 + EX31_RS16425 0.69 -0.2 36,936 + EX31_RS16425 0.78 -1.5 37,023 + -0.2 37,171 - -0.0 37,171 - -2.6 37,201 + -1.1 37,214 + -1.1 37,214 + -0.4 37,214 + +0.6 37,214 + -0.4 37,214 + -0.3 37,215 - -1.1 37,216 + -1.9 37,217 - -0.5 37,235 + -0.4 37,279 + -0.4 37,279 + -0.1 37,280 - -1.1 37,320 - -0.6 37,400 + +0.5 37,400 + -0.6 37,400 + +0.3 37,401 - +1.6 37,401 - -0.3 37,401 - +0.5 37,423 + -0.4 37,509 + EX31_RS16430 0.14 -0.4 37,509 + EX31_RS16430 0.14 +1.4 37,509 + EX31_RS16430 0.14 -0.9 37,510 - EX31_RS16430 0.14 +0.4 37,515 + EX31_RS16430 0.15 -1.1 37,515 + EX31_RS16430 0.15 -0.3 37,516 - EX31_RS16430 0.15 -1.3 37,571 + EX31_RS16430 0.18 -0.1 37,571 + EX31_RS16430 0.18 +0.8 37,591 + EX31_RS16430 0.20 -0.1 37,603 + EX31_RS16430 0.21 -1.4 37,616 + EX31_RS16430 0.22 +1.2 37,649 + EX31_RS16430 0.24 +0.2 37,649 + EX31_RS16430 0.24 -0.1 37,650 - EX31_RS16430 0.24 -2.7 37,736 + EX31_RS16430 0.30 +0.2 37,739 + EX31_RS16430 0.30 +0.6 37,739 + EX31_RS16430 0.30 +0.6 37,739 + EX31_RS16430 0.30 -0.3 37,739 + EX31_RS16430 0.30 +0.3 37,739 + EX31_RS16430 0.30 +1.0 37,740 - EX31_RS16430 0.30 -1.1 37,740 - EX31_RS16430 0.30 +0.8 37,740 - EX31_RS16430 0.30 +0.7 37,740 - EX31_RS16430 0.30 -0.3 37,753 + EX31_RS16430 0.31 -1.4 37,821 - EX31_RS16430 0.36 -2.8 37,830 + EX31_RS16430 0.36 +2.0 37,970 + EX31_RS16430 0.46 -0.4 37,971 - EX31_RS16430 0.46 -0.3 38,036 + EX31_RS16430 0.51 +0.8 38,036 + EX31_RS16430 0.51 +1.3 38,040 + EX31_RS16430 0.51 -0.2 38,040 + EX31_RS16430 0.51 -0.7 38,040 + EX31_RS16430 0.51 -0.2 38,040 + EX31_RS16430 0.51 -1.4 38,040 + EX31_RS16430 0.51 -0.3 38,040 + EX31_RS16430 0.51 -0.3 38,040 + EX31_RS16430 0.51 -0.2 38,040 + EX31_RS16430 0.51 +1.1 38,040 + EX31_RS16430 0.51 -1.1 38,040 + EX31_RS16430 0.51 -1.3 38,041 - EX31_RS16430 0.51 -0.8 38,041 - EX31_RS16430 0.51 +0.2 38,041 - EX31_RS16430 0.51 +1.5 38,043 - EX31_RS16430 0.51 +2.2 38,070 + EX31_RS16430 0.53 +0.7 38,070 + EX31_RS16430 0.53 -1.1 38,071 - EX31_RS16430 0.53 -0.8
Or see this region's nucleotide sequence