Experiment: MGL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS14760 and EX31_RS14765 are separated by 202 nucleotides EX31_RS14765 and EX31_RS14770 are separated by 2 nucleotides EX31_RS14770 and EX31_RS14775 overlap by 14 nucleotides EX31_RS14775 and EX31_RS14780 are separated by 278 nucleotides
EX31_RS14760: EX31_RS14760 - sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB, at 44,935 to 46,248
_RS14760
EX31_RS14765: EX31_RS14765 - type VI secretion system tube protein Hcp, at 46,451 to 46,930
_RS14765
EX31_RS14770: EX31_RS14770 - hypothetical protein, at 46,933 to 47,193
_RS14770
EX31_RS14775: EX31_RS14775 - hypothetical protein, at 47,180 to 47,860
_RS14775
EX31_RS14780: EX31_RS14780 - PLP-dependent aminotransferase family protein, at 48,139 to 49,326
_RS14780
Position (kb) 46
47
48 Strain fitness (log2 ratio) -2
-1
0
1
2 at 45.933 kb on - strand, within EX31_RS14760 at 45.983 kb on + strand, within EX31_RS14760 at 45.983 kb on + strand, within EX31_RS14760 at 45.983 kb on + strand, within EX31_RS14760 at 46.052 kb on + strand, within EX31_RS14760 at 46.053 kb on - strand, within EX31_RS14760 at 46.053 kb on - strand, within EX31_RS14760 at 46.053 kb on - strand, within EX31_RS14760 at 46.135 kb on + strand at 46.135 kb on + strand at 46.149 kb on + strand at 46.150 kb on - strand at 46.150 kb on - strand at 46.150 kb on - strand at 46.150 kb on - strand at 46.150 kb on - strand at 46.150 kb on - strand at 46.295 kb on + strand at 46.295 kb on + strand at 46.296 kb on - strand at 46.296 kb on - strand at 46.296 kb on - strand at 46.296 kb on - strand at 46.341 kb on + strand at 46.341 kb on + strand at 46.342 kb on - strand at 46.342 kb on - strand at 46.342 kb on - strand at 46.439 kb on - strand at 46.439 kb on - strand at 46.443 kb on + strand at 46.443 kb on + strand at 46.444 kb on - strand at 46.444 kb on - strand at 46.447 kb on - strand at 46.452 kb on + strand at 46.452 kb on + strand at 46.452 kb on + strand at 46.453 kb on - strand at 46.487 kb on + strand at 46.491 kb on - strand at 46.507 kb on - strand, within EX31_RS14765 at 46.507 kb on - strand, within EX31_RS14765 at 46.641 kb on - strand, within EX31_RS14765 at 46.662 kb on + strand, within EX31_RS14765 at 46.662 kb on + strand, within EX31_RS14765 at 46.663 kb on - strand, within EX31_RS14765 at 46.663 kb on - strand, within EX31_RS14765 at 46.718 kb on + strand, within EX31_RS14765 at 46.762 kb on + strand, within EX31_RS14765 at 46.762 kb on + strand, within EX31_RS14765 at 46.774 kb on + strand, within EX31_RS14765 at 46.774 kb on + strand, within EX31_RS14765 at 46.774 kb on + strand, within EX31_RS14765 at 46.844 kb on - strand, within EX31_RS14765 at 46.914 kb on + strand at 46.915 kb on - strand at 46.924 kb on + strand at 46.925 kb on - strand at 46.971 kb on - strand, within EX31_RS14770 at 46.971 kb on - strand, within EX31_RS14770 at 47.046 kb on + strand, within EX31_RS14770 at 47.067 kb on + strand, within EX31_RS14770 at 47.068 kb on - strand, within EX31_RS14770 at 47.137 kb on + strand, within EX31_RS14770 at 47.138 kb on - strand, within EX31_RS14770 at 47.138 kb on - strand, within EX31_RS14770 at 47.181 kb on + strand at 47.181 kb on + strand at 47.181 kb on + strand at 47.181 kb on + strand at 47.219 kb on + strand at 47.248 kb on + strand, within EX31_RS14775 at 47.248 kb on + strand, within EX31_RS14775 at 47.248 kb on + strand, within EX31_RS14775 at 47.249 kb on - strand, within EX31_RS14775 at 47.249 kb on - strand, within EX31_RS14775 at 47.255 kb on + strand, within EX31_RS14775 at 47.255 kb on + strand, within EX31_RS14775 at 47.255 kb on + strand, within EX31_RS14775 at 47.255 kb on + strand, within EX31_RS14775 at 47.255 kb on + strand, within EX31_RS14775 at 47.255 kb on + strand, within EX31_RS14775 at 47.256 kb on - strand, within EX31_RS14775 at 47.256 kb on - strand, within EX31_RS14775 at 47.256 kb on - strand, within EX31_RS14775 at 47.256 kb on - strand, within EX31_RS14775 at 47.256 kb on - strand, within EX31_RS14775 at 47.256 kb on - strand, within EX31_RS14775 at 47.256 kb on - strand, within EX31_RS14775 at 47.256 kb on - strand, within EX31_RS14775 at 47.256 kb on - strand, within EX31_RS14775 at 47.256 kb on - strand, within EX31_RS14775 at 47.256 kb on - strand, within EX31_RS14775 at 47.304 kb on + strand, within EX31_RS14775 at 47.304 kb on + strand, within EX31_RS14775 at 47.304 kb on + strand, within EX31_RS14775 at 47.304 kb on + strand, within EX31_RS14775 at 47.305 kb on - strand, within EX31_RS14775 at 47.305 kb on - strand, within EX31_RS14775 at 47.305 kb on - strand, within EX31_RS14775 at 47.305 kb on - strand, within EX31_RS14775 at 47.308 kb on + strand, within EX31_RS14775 at 47.308 kb on + strand, within EX31_RS14775 at 47.309 kb on - strand, within EX31_RS14775 at 47.309 kb on - strand, within EX31_RS14775 at 47.309 kb on - strand, within EX31_RS14775 at 47.309 kb on - strand, within EX31_RS14775 at 47.309 kb on - strand, within EX31_RS14775 at 47.316 kb on + strand, within EX31_RS14775 at 47.316 kb on + strand, within EX31_RS14775 at 47.317 kb on - strand, within EX31_RS14775 at 47.317 kb on - strand, within EX31_RS14775 at 47.317 kb on - strand, within EX31_RS14775 at 47.317 kb on - strand, within EX31_RS14775 at 47.317 kb on - strand, within EX31_RS14775 at 47.341 kb on - strand, within EX31_RS14775 at 47.405 kb on + strand, within EX31_RS14775 at 47.407 kb on + strand, within EX31_RS14775 at 47.408 kb on - strand, within EX31_RS14775 at 47.408 kb on - strand, within EX31_RS14775 at 47.408 kb on - strand, within EX31_RS14775 at 47.462 kb on - strand, within EX31_RS14775 at 47.520 kb on - strand, within EX31_RS14775 at 47.554 kb on - strand, within EX31_RS14775 at 47.560 kb on + strand, within EX31_RS14775 at 47.625 kb on - strand, within EX31_RS14775 at 47.626 kb on + strand, within EX31_RS14775 at 47.626 kb on + strand, within EX31_RS14775 at 47.627 kb on - strand, within EX31_RS14775 at 47.627 kb on - strand, within EX31_RS14775 at 47.634 kb on + strand, within EX31_RS14775 at 47.642 kb on + strand, within EX31_RS14775 at 47.650 kb on + strand, within EX31_RS14775 at 47.737 kb on + strand, within EX31_RS14775 at 47.766 kb on - strand, within EX31_RS14775 at 47.795 kb on + strand at 47.796 kb on - strand at 47.828 kb on + strand at 47.829 kb on - strand at 47.829 kb on - strand at 47.829 kb on - strand at 47.829 kb on - strand at 47.829 kb on - strand at 47.830 kb on + strand at 47.895 kb on + strand at 47.896 kb on - strand at 47.968 kb on + strand at 47.981 kb on + strand at 47.981 kb on + strand at 47.992 kb on + strand at 47.992 kb on + strand at 47.992 kb on + strand at 47.993 kb on - strand at 47.993 kb on - strand at 47.997 kb on + strand at 47.997 kb on + strand at 47.998 kb on - strand at 47.998 kb on - strand at 47.998 kb on - strand at 48.033 kb on - strand at 48.040 kb on + strand at 48.041 kb on - strand at 48.041 kb on - strand at 48.047 kb on - strand at 48.047 kb on - strand at 48.102 kb on + strand at 48.102 kb on + strand at 48.102 kb on + strand at 48.102 kb on + strand at 48.103 kb on - strand at 48.103 kb on - strand at 48.103 kb on - strand at 48.104 kb on + strand at 48.105 kb on - strand at 48.118 kb on + strand at 48.118 kb on + strand at 48.118 kb on + strand at 48.118 kb on + strand at 48.118 kb on + strand at 48.119 kb on - strand at 48.119 kb on - strand at 48.119 kb on - strand at 48.140 kb on + strand at 48.140 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MGL remove 45,933 - EX31_RS14760 0.76 +0.0 45,983 + EX31_RS14760 0.80 +1.1 45,983 + EX31_RS14760 0.80 -0.4 45,983 + EX31_RS14760 0.80 +0.5 46,052 + EX31_RS14760 0.85 +0.5 46,053 - EX31_RS14760 0.85 +1.2 46,053 - EX31_RS14760 0.85 +0.6 46,053 - EX31_RS14760 0.85 +0.2 46,135 + -0.1 46,135 + -1.4 46,149 + +0.5 46,150 - -0.9 46,150 - +0.9 46,150 - -0.5 46,150 - -0.2 46,150 - +0.7 46,150 - +0.9 46,295 + +0.5 46,295 + -0.1 46,296 - +0.4 46,296 - +0.8 46,296 - +0.1 46,296 - +1.2 46,341 + -0.3 46,341 + -0.6 46,342 - +0.4 46,342 - +0.1 46,342 - -0.8 46,439 - +0.1 46,439 - -0.5 46,443 + +0.2 46,443 + +0.1 46,444 - +0.2 46,444 - -0.4 46,447 - -1.7 46,452 + +0.5 46,452 + +0.3 46,452 + +0.3 46,453 - +0.3 46,487 + +0.4 46,491 - -0.4 46,507 - EX31_RS14765 0.12 -0.4 46,507 - EX31_RS14765 0.12 -1.5 46,641 - EX31_RS14765 0.40 -0.9 46,662 + EX31_RS14765 0.44 +0.3 46,662 + EX31_RS14765 0.44 -0.6 46,663 - EX31_RS14765 0.44 -0.5 46,663 - EX31_RS14765 0.44 -0.4 46,718 + EX31_RS14765 0.56 -0.2 46,762 + EX31_RS14765 0.65 -0.1 46,762 + EX31_RS14765 0.65 +0.1 46,774 + EX31_RS14765 0.67 +0.0 46,774 + EX31_RS14765 0.67 -0.2 46,774 + EX31_RS14765 0.67 +0.1 46,844 - EX31_RS14765 0.82 +0.5 46,914 + -0.4 46,915 - +0.1 46,924 + +0.1 46,925 - -0.2 46,971 - EX31_RS14770 0.15 -0.4 46,971 - EX31_RS14770 0.15 +0.2 47,046 + EX31_RS14770 0.43 -0.4 47,067 + EX31_RS14770 0.51 -1.3 47,068 - EX31_RS14770 0.52 -0.9 47,137 + EX31_RS14770 0.78 -1.6 47,138 - EX31_RS14770 0.79 -0.5 47,138 - EX31_RS14770 0.79 +0.7 47,181 + -0.2 47,181 + -0.3 47,181 + -0.9 47,181 + +0.2 47,219 + +0.4 47,248 + EX31_RS14775 0.10 +0.6 47,248 + EX31_RS14775 0.10 -0.8 47,248 + EX31_RS14775 0.10 -1.0 47,249 - EX31_RS14775 0.10 +1.6 47,249 - EX31_RS14775 0.10 +0.9 47,255 + EX31_RS14775 0.11 -0.1 47,255 + EX31_RS14775 0.11 -0.3 47,255 + EX31_RS14775 0.11 -0.3 47,255 + EX31_RS14775 0.11 +0.6 47,255 + EX31_RS14775 0.11 +0.8 47,255 + EX31_RS14775 0.11 +1.2 47,256 - EX31_RS14775 0.11 -0.6 47,256 - EX31_RS14775 0.11 +0.2 47,256 - EX31_RS14775 0.11 -0.3 47,256 - EX31_RS14775 0.11 +0.8 47,256 - EX31_RS14775 0.11 -0.4 47,256 - EX31_RS14775 0.11 -0.5 47,256 - EX31_RS14775 0.11 +0.0 47,256 - EX31_RS14775 0.11 -1.1 47,256 - EX31_RS14775 0.11 +0.2 47,256 - EX31_RS14775 0.11 +0.6 47,256 - EX31_RS14775 0.11 +0.5 47,304 + EX31_RS14775 0.18 -0.5 47,304 + EX31_RS14775 0.18 -0.0 47,304 + EX31_RS14775 0.18 +1.0 47,304 + EX31_RS14775 0.18 -1.0 47,305 - EX31_RS14775 0.18 +0.5 47,305 - EX31_RS14775 0.18 +0.6 47,305 - EX31_RS14775 0.18 -0.7 47,305 - EX31_RS14775 0.18 -0.4 47,308 + EX31_RS14775 0.19 -2.1 47,308 + EX31_RS14775 0.19 +0.4 47,309 - EX31_RS14775 0.19 +0.1 47,309 - EX31_RS14775 0.19 -0.3 47,309 - EX31_RS14775 0.19 +0.4 47,309 - EX31_RS14775 0.19 +0.6 47,309 - EX31_RS14775 0.19 +0.6 47,316 + EX31_RS14775 0.20 +0.6 47,316 + EX31_RS14775 0.20 +0.3 47,317 - EX31_RS14775 0.20 -0.3 47,317 - EX31_RS14775 0.20 -0.1 47,317 - EX31_RS14775 0.20 -0.2 47,317 - EX31_RS14775 0.20 -0.6 47,317 - EX31_RS14775 0.20 +0.5 47,341 - EX31_RS14775 0.24 -0.8 47,405 + EX31_RS14775 0.33 -0.1 47,407 + EX31_RS14775 0.33 -0.8 47,408 - EX31_RS14775 0.33 -1.3 47,408 - EX31_RS14775 0.33 -0.2 47,408 - EX31_RS14775 0.33 +0.7 47,462 - EX31_RS14775 0.41 -1.3 47,520 - EX31_RS14775 0.50 +0.2 47,554 - EX31_RS14775 0.55 -0.3 47,560 + EX31_RS14775 0.56 +0.7 47,625 - EX31_RS14775 0.65 +0.0 47,626 + EX31_RS14775 0.65 -0.3 47,626 + EX31_RS14775 0.65 -0.4 47,627 - EX31_RS14775 0.66 +0.6 47,627 - EX31_RS14775 0.66 -0.6 47,634 + EX31_RS14775 0.67 +0.7 47,642 + EX31_RS14775 0.68 -0.2 47,650 + EX31_RS14775 0.69 -0.1 47,737 + EX31_RS14775 0.82 +0.2 47,766 - EX31_RS14775 0.86 -0.3 47,795 + -0.2 47,796 - +0.3 47,828 + -0.7 47,829 - -1.6 47,829 - +1.8 47,829 - +0.3 47,829 - -0.2 47,829 - +0.3 47,830 + +0.6 47,895 + -0.5 47,896 - -0.4 47,968 + -0.5 47,981 + -0.6 47,981 + -0.4 47,992 + -0.2 47,992 + -0.7 47,992 + +0.2 47,993 - +0.8 47,993 - -0.1 47,997 + -1.0 47,997 + -0.0 47,998 - +0.2 47,998 - -1.8 47,998 - -2.7 48,033 - -0.9 48,040 + -1.1 48,041 - +0.5 48,041 - -1.5 48,047 - -0.3 48,047 - -1.5 48,102 + +0.3 48,102 + -0.4 48,102 + -0.0 48,102 + -0.4 48,103 - +0.4 48,103 - +0.5 48,103 - -1.0 48,104 + +1.3 48,105 - -1.3 48,118 + +0.4 48,118 + +0.3 48,118 + +0.3 48,118 + -1.0 48,118 + +0.0 48,119 - -1.7 48,119 - -0.0 48,119 - +0.1 48,140 + +0.1 48,140 + +0.4
Or see this region's nucleotide sequence