Experiment: MGL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS04995 and EX31_RS05000 are separated by 277 nucleotides EX31_RS05000 and EX31_RS05005 are separated by 144 nucleotides
EX31_RS04995: EX31_RS04995 - DeoR/GlpR family transcriptional regulator, at 125,515 to 126,273
_RS04995
EX31_RS05000: EX31_RS05000 - glycerol-3-phosphate dehydrogenase, at 126,551 to 128,062
_RS05000
EX31_RS05005: EX31_RS05005 - glycogen phosphorylase, at 128,207 to 130,654
_RS05005
Position (kb) 126
127
128
129 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 125.553 kb on - strand at 125.569 kb on + strand at 125.570 kb on - strand at 125.570 kb on - strand at 125.570 kb on - strand at 125.619 kb on + strand, within EX31_RS04995 at 125.620 kb on - strand, within EX31_RS04995 at 125.620 kb on - strand, within EX31_RS04995 at 125.655 kb on + strand, within EX31_RS04995 at 125.656 kb on - strand, within EX31_RS04995 at 125.713 kb on + strand, within EX31_RS04995 at 125.713 kb on + strand, within EX31_RS04995 at 125.713 kb on + strand, within EX31_RS04995 at 125.713 kb on + strand, within EX31_RS04995 at 125.713 kb on + strand, within EX31_RS04995 at 125.713 kb on + strand, within EX31_RS04995 at 125.714 kb on - strand, within EX31_RS04995 at 125.714 kb on - strand, within EX31_RS04995 at 125.714 kb on - strand, within EX31_RS04995 at 125.714 kb on - strand, within EX31_RS04995 at 125.714 kb on - strand, within EX31_RS04995 at 125.802 kb on + strand, within EX31_RS04995 at 125.803 kb on - strand, within EX31_RS04995 at 125.848 kb on - strand, within EX31_RS04995 at 125.853 kb on + strand, within EX31_RS04995 at 126.042 kb on + strand, within EX31_RS04995 at 126.043 kb on - strand, within EX31_RS04995 at 126.193 kb on + strand, within EX31_RS04995 at 126.193 kb on + strand, within EX31_RS04995 at 126.208 kb on - strand at 126.286 kb on + strand at 126.286 kb on + strand at 126.287 kb on - strand at 126.399 kb on + strand at 126.399 kb on + strand at 126.399 kb on + strand at 126.400 kb on - strand at 126.400 kb on - strand at 126.443 kb on + strand at 126.443 kb on + strand at 126.443 kb on + strand at 126.443 kb on + strand at 126.443 kb on + strand at 126.443 kb on + strand at 126.443 kb on + strand at 126.443 kb on + strand at 126.443 kb on + strand at 126.444 kb on - strand at 126.444 kb on - strand at 126.444 kb on - strand at 126.453 kb on + strand at 126.453 kb on + strand at 126.454 kb on - strand at 126.454 kb on - strand at 126.515 kb on + strand at 126.515 kb on + strand at 126.515 kb on + strand at 126.524 kb on + strand at 126.524 kb on + strand at 126.525 kb on - strand at 126.573 kb on + strand at 126.714 kb on - strand, within EX31_RS05000 at 126.790 kb on + strand, within EX31_RS05000 at 126.872 kb on + strand, within EX31_RS05000 at 127.286 kb on + strand, within EX31_RS05000 at 127.437 kb on - strand, within EX31_RS05000 at 127.487 kb on + strand, within EX31_RS05000 at 127.550 kb on + strand, within EX31_RS05000 at 127.623 kb on - strand, within EX31_RS05000 at 127.627 kb on + strand, within EX31_RS05000 at 127.664 kb on + strand, within EX31_RS05000 at 127.664 kb on + strand, within EX31_RS05000 at 127.664 kb on + strand, within EX31_RS05000 at 127.738 kb on + strand, within EX31_RS05000 at 127.742 kb on + strand, within EX31_RS05000 at 127.742 kb on + strand, within EX31_RS05000 at 127.807 kb on + strand, within EX31_RS05000 at 127.807 kb on + strand, within EX31_RS05000 at 127.830 kb on + strand, within EX31_RS05000 at 127.830 kb on + strand, within EX31_RS05000 at 127.960 kb on + strand at 127.972 kb on + strand at 128.066 kb on - strand at 128.070 kb on - strand at 128.129 kb on + strand at 128.130 kb on - strand at 128.130 kb on - strand at 128.140 kb on - strand at 128.140 kb on - strand at 128.160 kb on - strand at 128.208 kb on + strand at 128.209 kb on - strand at 128.209 kb on - strand at 128.277 kb on + strand at 128.277 kb on + strand at 128.278 kb on - strand at 128.278 kb on - strand at 128.296 kb on + strand at 128.296 kb on + strand at 128.296 kb on + strand at 128.297 kb on - strand at 128.297 kb on - strand at 128.297 kb on - strand at 128.297 kb on - strand at 128.297 kb on - strand at 128.332 kb on + strand at 128.332 kb on + strand at 128.332 kb on + strand at 128.333 kb on - strand at 128.333 kb on - strand at 128.333 kb on - strand at 128.334 kb on + strand at 128.335 kb on - strand at 128.335 kb on - strand at 128.335 kb on - strand at 128.335 kb on - strand at 128.367 kb on + strand at 128.367 kb on + strand at 128.367 kb on + strand at 128.367 kb on + strand at 128.368 kb on - strand at 128.368 kb on - strand at 128.368 kb on - strand at 128.377 kb on - strand at 128.394 kb on + strand at 128.395 kb on - strand at 128.437 kb on - strand at 128.437 kb on - strand at 128.517 kb on + strand, within EX31_RS05005 at 128.517 kb on + strand, within EX31_RS05005 at 128.517 kb on + strand, within EX31_RS05005 at 128.517 kb on + strand, within EX31_RS05005 at 128.517 kb on + strand, within EX31_RS05005 at 128.518 kb on - strand, within EX31_RS05005 at 128.518 kb on - strand, within EX31_RS05005 at 128.518 kb on - strand, within EX31_RS05005 at 128.518 kb on - strand, within EX31_RS05005 at 128.518 kb on - strand, within EX31_RS05005 at 128.518 kb on - strand, within EX31_RS05005 at 128.518 kb on - strand, within EX31_RS05005 at 128.518 kb on - strand, within EX31_RS05005 at 128.518 kb on - strand, within EX31_RS05005 at 128.518 kb on - strand, within EX31_RS05005 at 128.518 kb on - strand, within EX31_RS05005 at 128.518 kb on - strand, within EX31_RS05005 at 128.518 kb on - strand, within EX31_RS05005 at 128.521 kb on + strand, within EX31_RS05005 at 128.521 kb on + strand, within EX31_RS05005 at 128.521 kb on + strand, within EX31_RS05005 at 128.521 kb on + strand, within EX31_RS05005 at 128.522 kb on - strand, within EX31_RS05005 at 128.522 kb on - strand, within EX31_RS05005 at 128.522 kb on - strand, within EX31_RS05005 at 128.522 kb on - strand, within EX31_RS05005 at 128.532 kb on + strand, within EX31_RS05005 at 128.532 kb on + strand, within EX31_RS05005 at 128.533 kb on - strand, within EX31_RS05005 at 128.546 kb on + strand, within EX31_RS05005 at 128.547 kb on - strand, within EX31_RS05005 at 128.569 kb on + strand, within EX31_RS05005 at 128.569 kb on + strand, within EX31_RS05005 at 128.570 kb on - strand, within EX31_RS05005 at 128.587 kb on + strand, within EX31_RS05005 at 128.587 kb on + strand, within EX31_RS05005 at 128.587 kb on + strand, within EX31_RS05005 at 128.587 kb on + strand, within EX31_RS05005 at 128.588 kb on - strand, within EX31_RS05005 at 128.588 kb on - strand, within EX31_RS05005 at 128.759 kb on - strand, within EX31_RS05005 at 128.766 kb on + strand, within EX31_RS05005 at 128.766 kb on + strand, within EX31_RS05005 at 128.766 kb on + strand, within EX31_RS05005 at 128.766 kb on + strand, within EX31_RS05005 at 128.766 kb on + strand, within EX31_RS05005 at 128.766 kb on + strand, within EX31_RS05005 at 128.766 kb on + strand, within EX31_RS05005 at 128.767 kb on - strand, within EX31_RS05005 at 128.767 kb on - strand, within EX31_RS05005 at 128.767 kb on - strand, within EX31_RS05005 at 128.767 kb on - strand, within EX31_RS05005 at 128.767 kb on - strand, within EX31_RS05005 at 128.767 kb on - strand, within EX31_RS05005 at 128.803 kb on + strand, within EX31_RS05005 at 128.804 kb on - strand, within EX31_RS05005 at 128.868 kb on + strand, within EX31_RS05005 at 128.868 kb on + strand, within EX31_RS05005 at 128.868 kb on + strand, within EX31_RS05005 at 128.868 kb on + strand, within EX31_RS05005 at 128.871 kb on + strand, within EX31_RS05005 at 128.949 kb on + strand, within EX31_RS05005 at 128.950 kb on - strand, within EX31_RS05005 at 128.978 kb on + strand, within EX31_RS05005 at 128.978 kb on + strand, within EX31_RS05005 at 128.978 kb on + strand, within EX31_RS05005 at 128.979 kb on - strand, within EX31_RS05005 at 128.989 kb on + strand, within EX31_RS05005 at 128.989 kb on + strand, within EX31_RS05005 at 128.990 kb on - strand, within EX31_RS05005 at 128.990 kb on - strand, within EX31_RS05005 at 128.990 kb on - strand, within EX31_RS05005 at 128.992 kb on - strand, within EX31_RS05005 at 129.008 kb on - strand, within EX31_RS05005 at 129.046 kb on + strand, within EX31_RS05005
Per-strain Table
Position Strand Gene LocusTag Fraction MGL remove 125,553 - +0.9 125,569 + -0.2 125,570 - +1.4 125,570 - +0.2 125,570 - -0.1 125,619 + EX31_RS04995 0.14 -1.2 125,620 - EX31_RS04995 0.14 -2.1 125,620 - EX31_RS04995 0.14 -2.0 125,655 + EX31_RS04995 0.18 -1.6 125,656 - EX31_RS04995 0.19 +0.2 125,713 + EX31_RS04995 0.26 -0.3 125,713 + EX31_RS04995 0.26 -0.0 125,713 + EX31_RS04995 0.26 -0.7 125,713 + EX31_RS04995 0.26 -0.2 125,713 + EX31_RS04995 0.26 -0.4 125,713 + EX31_RS04995 0.26 -1.3 125,714 - EX31_RS04995 0.26 -0.3 125,714 - EX31_RS04995 0.26 -1.5 125,714 - EX31_RS04995 0.26 -3.7 125,714 - EX31_RS04995 0.26 -0.3 125,714 - EX31_RS04995 0.26 -0.1 125,802 + EX31_RS04995 0.38 -0.5 125,803 - EX31_RS04995 0.38 -1.1 125,848 - EX31_RS04995 0.44 -0.2 125,853 + EX31_RS04995 0.45 -0.5 126,042 + EX31_RS04995 0.69 +0.2 126,043 - EX31_RS04995 0.70 +0.5 126,193 + EX31_RS04995 0.89 -1.0 126,193 + EX31_RS04995 0.89 -0.4 126,208 - -0.4 126,286 + -0.4 126,286 + -1.0 126,287 - -0.6 126,399 + -0.1 126,399 + -0.3 126,399 + +0.8 126,400 - -1.2 126,400 - -0.2 126,443 + +0.3 126,443 + +0.3 126,443 + +0.3 126,443 + +0.3 126,443 + -0.8 126,443 + +0.0 126,443 + +0.2 126,443 + -0.4 126,443 + +0.0 126,444 - -0.5 126,444 - -0.2 126,444 - -0.5 126,453 + -1.0 126,453 + -0.7 126,454 - -0.5 126,454 - +0.5 126,515 + -0.1 126,515 + -0.3 126,515 + +0.9 126,524 + -0.1 126,524 + -0.3 126,525 - +1.0 126,573 + -1.2 126,714 - EX31_RS05000 0.11 +0.2 126,790 + EX31_RS05000 0.16 +1.9 126,872 + EX31_RS05000 0.21 -1.0 127,286 + EX31_RS05000 0.49 -0.9 127,437 - EX31_RS05000 0.59 -1.0 127,487 + EX31_RS05000 0.62 -0.6 127,550 + EX31_RS05000 0.66 -1.3 127,623 - EX31_RS05000 0.71 +0.9 127,627 + EX31_RS05000 0.71 -0.4 127,664 + EX31_RS05000 0.74 -0.2 127,664 + EX31_RS05000 0.74 -0.2 127,664 + EX31_RS05000 0.74 +1.5 127,738 + EX31_RS05000 0.79 -1.8 127,742 + EX31_RS05000 0.79 -0.6 127,742 + EX31_RS05000 0.79 -1.7 127,807 + EX31_RS05000 0.83 +0.1 127,807 + EX31_RS05000 0.83 +0.2 127,830 + EX31_RS05000 0.85 -1.3 127,830 + EX31_RS05000 0.85 +0.8 127,960 + -0.6 127,972 + +0.2 128,066 - +0.7 128,070 - -1.5 128,129 + +0.0 128,130 - -0.3 128,130 - -0.5 128,140 - +0.0 128,140 - +0.8 128,160 - +0.2 128,208 + +1.0 128,209 - +0.1 128,209 - +0.3 128,277 + -0.5 128,277 + -0.7 128,278 - -0.1 128,278 - +0.3 128,296 + -0.5 128,296 + +0.2 128,296 + -0.7 128,297 - +0.2 128,297 - -1.8 128,297 - -0.9 128,297 - +0.5 128,297 - +0.8 128,332 + -1.0 128,332 + -0.2 128,332 + +0.4 128,333 - -1.0 128,333 - -0.1 128,333 - -1.2 128,334 + +0.3 128,335 - -0.6 128,335 - +0.8 128,335 - +0.4 128,335 - +0.2 128,367 + +0.6 128,367 + -1.9 128,367 + -0.0 128,367 + -0.1 128,368 - -0.1 128,368 - +0.1 128,368 - -0.7 128,377 - -1.0 128,394 + +0.1 128,395 - -1.4 128,437 - -0.3 128,437 - -0.1 128,517 + EX31_RS05005 0.13 +0.2 128,517 + EX31_RS05005 0.13 -0.8 128,517 + EX31_RS05005 0.13 +0.1 128,517 + EX31_RS05005 0.13 +0.0 128,517 + EX31_RS05005 0.13 +0.7 128,518 - EX31_RS05005 0.13 +0.2 128,518 - EX31_RS05005 0.13 -0.3 128,518 - EX31_RS05005 0.13 +0.1 128,518 - EX31_RS05005 0.13 +0.8 128,518 - EX31_RS05005 0.13 -2.5 128,518 - EX31_RS05005 0.13 +0.2 128,518 - EX31_RS05005 0.13 +1.4 128,518 - EX31_RS05005 0.13 +0.6 128,518 - EX31_RS05005 0.13 -0.2 128,518 - EX31_RS05005 0.13 -1.6 128,518 - EX31_RS05005 0.13 -0.2 128,518 - EX31_RS05005 0.13 +0.4 128,518 - EX31_RS05005 0.13 +0.3 128,521 + EX31_RS05005 0.13 +1.6 128,521 + EX31_RS05005 0.13 +0.2 128,521 + EX31_RS05005 0.13 -1.1 128,521 + EX31_RS05005 0.13 -0.1 128,522 - EX31_RS05005 0.13 +0.5 128,522 - EX31_RS05005 0.13 -1.2 128,522 - EX31_RS05005 0.13 +0.0 128,522 - EX31_RS05005 0.13 -0.2 128,532 + EX31_RS05005 0.13 -0.3 128,532 + EX31_RS05005 0.13 -0.2 128,533 - EX31_RS05005 0.13 -0.5 128,546 + EX31_RS05005 0.14 -0.3 128,547 - EX31_RS05005 0.14 -0.1 128,569 + EX31_RS05005 0.15 -1.3 128,569 + EX31_RS05005 0.15 -0.0 128,570 - EX31_RS05005 0.15 +0.1 128,587 + EX31_RS05005 0.16 +0.3 128,587 + EX31_RS05005 0.16 -1.2 128,587 + EX31_RS05005 0.16 +0.2 128,587 + EX31_RS05005 0.16 +0.7 128,588 - EX31_RS05005 0.16 +0.7 128,588 - EX31_RS05005 0.16 -0.7 128,759 - EX31_RS05005 0.23 -0.1 128,766 + EX31_RS05005 0.23 +0.7 128,766 + EX31_RS05005 0.23 +0.3 128,766 + EX31_RS05005 0.23 -0.0 128,766 + EX31_RS05005 0.23 +1.3 128,766 + EX31_RS05005 0.23 -0.9 128,766 + EX31_RS05005 0.23 -0.2 128,766 + EX31_RS05005 0.23 -0.2 128,767 - EX31_RS05005 0.23 +1.4 128,767 - EX31_RS05005 0.23 -0.2 128,767 - EX31_RS05005 0.23 -0.3 128,767 - EX31_RS05005 0.23 -0.9 128,767 - EX31_RS05005 0.23 -0.0 128,767 - EX31_RS05005 0.23 -2.0 128,803 + EX31_RS05005 0.24 +0.3 128,804 - EX31_RS05005 0.24 +0.3 128,868 + EX31_RS05005 0.27 +0.2 128,868 + EX31_RS05005 0.27 +0.6 128,868 + EX31_RS05005 0.27 +1.2 128,868 + EX31_RS05005 0.27 +0.6 128,871 + EX31_RS05005 0.27 +0.5 128,949 + EX31_RS05005 0.30 -0.0 128,950 - EX31_RS05005 0.30 +1.1 128,978 + EX31_RS05005 0.31 +1.4 128,978 + EX31_RS05005 0.31 +0.7 128,978 + EX31_RS05005 0.31 -0.3 128,979 - EX31_RS05005 0.32 -0.1 128,989 + EX31_RS05005 0.32 +0.6 128,989 + EX31_RS05005 0.32 +0.4 128,990 - EX31_RS05005 0.32 -0.1 128,990 - EX31_RS05005 0.32 +1.1 128,990 - EX31_RS05005 0.32 +3.0 128,992 - EX31_RS05005 0.32 -0.1 129,008 - EX31_RS05005 0.33 -1.7 129,046 + EX31_RS05005 0.34 +0.3
Or see this region's nucleotide sequence