Strain Fitness in Rahnella sp. WP5 around EX31_RS04225

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS04220 and EX31_RS04225 are separated by 476 nucleotidesEX31_RS04225 and EX31_RS04230 are separated by 2 nucleotides EX31_RS04220: EX31_RS04220 - HAAAP family serine/threonine permease, at 369,909 to 371,192 _RS04220 EX31_RS04225: EX31_RS04225 - YfiR family protein, at 371,669 to 372,367 _RS04225 EX31_RS04230: EX31_RS04230 - diguanylate cyclase, at 372,370 to 373,650 _RS04230 Position (kb) 371 372 373Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 370.690 kb on - strand, within EX31_RS04220at 370.698 kb on - strand, within EX31_RS04220at 370.698 kb on - strand, within EX31_RS04220at 370.698 kb on - strand, within EX31_RS04220at 370.698 kb on - strand, within EX31_RS04220at 370.718 kb on + strand, within EX31_RS04220at 370.718 kb on + strand, within EX31_RS04220at 370.719 kb on - strand, within EX31_RS04220at 370.797 kb on - strand, within EX31_RS04220at 370.815 kb on - strand, within EX31_RS04220at 370.833 kb on - strand, within EX31_RS04220at 370.850 kb on - strand, within EX31_RS04220at 370.863 kb on - strand, within EX31_RS04220at 370.868 kb on - strand, within EX31_RS04220at 370.883 kb on - strand, within EX31_RS04220at 370.893 kb on - strand, within EX31_RS04220at 370.893 kb on - strand, within EX31_RS04220at 370.940 kb on + strand, within EX31_RS04220at 370.943 kb on + strand, within EX31_RS04220at 371.034 kb on - strand, within EX31_RS04220at 371.115 kb on + strandat 371.183 kb on + strandat 371.184 kb on - strandat 371.319 kb on - strandat 371.323 kb on - strandat 371.323 kb on - strandat 371.334 kb on - strandat 371.377 kb on + strandat 371.379 kb on + strandat 371.419 kb on - strandat 371.598 kb on + strandat 371.696 kb on - strandat 371.728 kb on + strandat 371.729 kb on - strandat 371.729 kb on - strandat 371.735 kb on - strandat 371.735 kb on - strandat 371.804 kb on + strand, within EX31_RS04225at 371.804 kb on + strand, within EX31_RS04225at 371.805 kb on - strand, within EX31_RS04225at 371.820 kb on + strand, within EX31_RS04225at 371.820 kb on + strand, within EX31_RS04225at 371.820 kb on + strand, within EX31_RS04225at 371.820 kb on + strand, within EX31_RS04225at 371.821 kb on - strand, within EX31_RS04225at 371.821 kb on - strand, within EX31_RS04225at 371.821 kb on - strand, within EX31_RS04225at 371.957 kb on - strand, within EX31_RS04225at 372.028 kb on + strand, within EX31_RS04225at 372.028 kb on + strand, within EX31_RS04225at 372.028 kb on + strand, within EX31_RS04225at 372.028 kb on + strand, within EX31_RS04225at 372.028 kb on + strand, within EX31_RS04225at 372.029 kb on - strand, within EX31_RS04225at 372.140 kb on + strand, within EX31_RS04225at 372.140 kb on + strand, within EX31_RS04225at 372.141 kb on - strand, within EX31_RS04225at 372.141 kb on - strand, within EX31_RS04225at 372.141 kb on - strand, within EX31_RS04225at 372.177 kb on + strand, within EX31_RS04225at 372.178 kb on - strand, within EX31_RS04225at 372.178 kb on - strand, within EX31_RS04225at 372.178 kb on - strand, within EX31_RS04225at 372.240 kb on + strand, within EX31_RS04225at 372.240 kb on + strand, within EX31_RS04225at 372.241 kb on - strand, within EX31_RS04225at 372.340 kb on - strandat 372.340 kb on - strandat 372.342 kb on + strandat 372.342 kb on + strandat 372.343 kb on - strandat 372.343 kb on - strandat 372.343 kb on - strandat 372.343 kb on - strandat 372.343 kb on - strandat 372.343 kb on - strandat 372.365 kb on + strandat 372.365 kb on + strandat 372.365 kb on + strandat 372.379 kb on - strandat 372.491 kb on + strandat 372.568 kb on + strand, within EX31_RS04230at 372.568 kb on + strand, within EX31_RS04230at 372.569 kb on - strand, within EX31_RS04230at 372.569 kb on - strand, within EX31_RS04230at 372.569 kb on - strand, within EX31_RS04230at 372.569 kb on - strand, within EX31_RS04230at 372.569 kb on - strand, within EX31_RS04230at 372.595 kb on - strand, within EX31_RS04230at 372.595 kb on - strand, within EX31_RS04230at 372.661 kb on - strand, within EX31_RS04230at 372.868 kb on - strand, within EX31_RS04230at 372.868 kb on - strand, within EX31_RS04230at 372.936 kb on + strand, within EX31_RS04230at 372.936 kb on + strand, within EX31_RS04230at 372.936 kb on + strand, within EX31_RS04230at 372.937 kb on - strand, within EX31_RS04230at 372.937 kb on - strand, within EX31_RS04230at 372.960 kb on + strand, within EX31_RS04230at 372.960 kb on + strand, within EX31_RS04230at 372.961 kb on - strand, within EX31_RS04230at 373.096 kb on - strand, within EX31_RS04230at 373.096 kb on - strand, within EX31_RS04230at 373.158 kb on + strand, within EX31_RS04230at 373.158 kb on + strand, within EX31_RS04230at 373.179 kb on + strand, within EX31_RS04230at 373.179 kb on + strand, within EX31_RS04230at 373.179 kb on + strand, within EX31_RS04230at 373.179 kb on + strand, within EX31_RS04230at 373.185 kb on + strand, within EX31_RS04230at 373.254 kb on + strand, within EX31_RS04230at 373.254 kb on + strand, within EX31_RS04230

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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370,690 - EX31_RS04220 0.61 -1.4
370,698 - EX31_RS04220 0.61 +0.1
370,698 - EX31_RS04220 0.61 +0.2
370,698 - EX31_RS04220 0.61 +0.8
370,698 - EX31_RS04220 0.61 -0.4
370,718 + EX31_RS04220 0.63 +0.4
370,718 + EX31_RS04220 0.63 +1.9
370,719 - EX31_RS04220 0.63 +0.2
370,797 - EX31_RS04220 0.69 +0.1
370,815 - EX31_RS04220 0.71 -0.3
370,833 - EX31_RS04220 0.72 +0.6
370,850 - EX31_RS04220 0.73 +0.0
370,863 - EX31_RS04220 0.74 -0.7
370,868 - EX31_RS04220 0.75 +1.1
370,883 - EX31_RS04220 0.76 +0.9
370,893 - EX31_RS04220 0.77 -0.6
370,893 - EX31_RS04220 0.77 +0.6
370,940 + EX31_RS04220 0.80 +0.3
370,943 + EX31_RS04220 0.81 -2.1
371,034 - EX31_RS04220 0.88 +0.7
371,115 + +0.7
371,183 + +0.6
371,184 - -0.7
371,319 - -0.9
371,323 - +0.6
371,323 - -0.6
371,334 - -0.4
371,377 + +0.8
371,379 + -0.2
371,419 - -0.5
371,598 + +0.5
371,696 - -0.5
371,728 + +0.3
371,729 - +0.3
371,729 - -1.2
371,735 - -0.0
371,735 - +1.1
371,804 + EX31_RS04225 0.19 +2.1
371,804 + EX31_RS04225 0.19 +2.5
371,805 - EX31_RS04225 0.19 -0.4
371,820 + EX31_RS04225 0.22 +1.4
371,820 + EX31_RS04225 0.22 +0.5
371,820 + EX31_RS04225 0.22 +0.8
371,820 + EX31_RS04225 0.22 +0.5
371,821 - EX31_RS04225 0.22 -2.1
371,821 - EX31_RS04225 0.22 +0.5
371,821 - EX31_RS04225 0.22 -0.2
371,957 - EX31_RS04225 0.41 -0.3
372,028 + EX31_RS04225 0.51 -0.2
372,028 + EX31_RS04225 0.51 +1.4
372,028 + EX31_RS04225 0.51 -0.9
372,028 + EX31_RS04225 0.51 +2.3
372,028 + EX31_RS04225 0.51 +2.7
372,029 - EX31_RS04225 0.52 -0.4
372,140 + EX31_RS04225 0.67 +0.0
372,140 + EX31_RS04225 0.67 -0.7
372,141 - EX31_RS04225 0.68 -0.2
372,141 - EX31_RS04225 0.68 -1.5
372,141 - EX31_RS04225 0.68 -0.0
372,177 + EX31_RS04225 0.73 -0.6
372,178 - EX31_RS04225 0.73 +0.6
372,178 - EX31_RS04225 0.73 +0.7
372,178 - EX31_RS04225 0.73 -1.2
372,240 + EX31_RS04225 0.82 -0.7
372,240 + EX31_RS04225 0.82 +0.3
372,241 - EX31_RS04225 0.82 +0.1
372,340 - -1.6
372,340 - +0.7
372,342 + -0.1
372,342 + -3.5
372,343 - +0.7
372,343 - -0.9
372,343 - -0.3
372,343 - -0.3
372,343 - +1.4
372,343 - -0.3
372,365 + -0.1
372,365 + +0.1
372,365 + +0.1
372,379 - +0.5
372,491 + -0.0
372,568 + EX31_RS04230 0.15 -0.2
372,568 + EX31_RS04230 0.15 +0.3
372,569 - EX31_RS04230 0.16 +0.8
372,569 - EX31_RS04230 0.16 -0.5
372,569 - EX31_RS04230 0.16 +0.6
372,569 - EX31_RS04230 0.16 -3.3
372,569 - EX31_RS04230 0.16 +0.6
372,595 - EX31_RS04230 0.18 -1.0
372,595 - EX31_RS04230 0.18 +0.4
372,661 - EX31_RS04230 0.23 -0.2
372,868 - EX31_RS04230 0.39 -1.0
372,868 - EX31_RS04230 0.39 -1.4
372,936 + EX31_RS04230 0.44 -0.4
372,936 + EX31_RS04230 0.44 +0.3
372,936 + EX31_RS04230 0.44 +0.1
372,937 - EX31_RS04230 0.44 +1.1
372,937 - EX31_RS04230 0.44 +0.4
372,960 + EX31_RS04230 0.46 -0.0
372,960 + EX31_RS04230 0.46 -0.3
372,961 - EX31_RS04230 0.46 -3.2
373,096 - EX31_RS04230 0.57 +0.1
373,096 - EX31_RS04230 0.57 -0.4
373,158 + EX31_RS04230 0.62 -1.9
373,158 + EX31_RS04230 0.62 +0.0
373,179 + EX31_RS04230 0.63 -0.5
373,179 + EX31_RS04230 0.63 -0.2
373,179 + EX31_RS04230 0.63 -0.2
373,179 + EX31_RS04230 0.63 -0.0
373,185 + EX31_RS04230 0.64 +0.9
373,254 + EX31_RS04230 0.69 +0.6
373,254 + EX31_RS04230 0.69 +0.2

Or see this region's nucleotide sequence