Experiment: MGL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS01880 and EX31_RS01885 are separated by 669 nucleotides EX31_RS01885 and EX31_RS01890 are separated by 113 nucleotides EX31_RS01890 and EX31_RS01895 are separated by 73 nucleotides
EX31_RS01880: EX31_RS01880 - type VI secretion system ATPase TssH, at 406,564 to 409,221
_RS01880
EX31_RS01885: EX31_RS01885 - type IV secretion protein Rhs, at 409,891 to 410,289
_RS01885
EX31_RS01890: EX31_RS01890 - hypothetical protein, at 410,403 to 410,747
_RS01890
EX31_RS01895: EX31_RS01895 - type VI secretion system tip protein VgrG, at 410,821 to 413,367
_RS01895
Position (kb) 409
410
411 Strain fitness (log2 ratio) -1
0
1 at 408.905 kb on - strand, within EX31_RS01880 at 408.905 kb on - strand, within EX31_RS01880 at 409.290 kb on - strand at 409.331 kb on + strand at 409.340 kb on - strand at 409.340 kb on - strand at 409.468 kb on - strand at 409.639 kb on - strand at 409.819 kb on - strand at 409.845 kb on + strand at 409.975 kb on + strand, within EX31_RS01885 at 410.114 kb on + strand, within EX31_RS01885 at 410.157 kb on - strand, within EX31_RS01885 at 410.193 kb on + strand, within EX31_RS01885 at 410.257 kb on + strand at 410.328 kb on + strand at 410.358 kb on + strand at 410.882 kb on - strand at 410.972 kb on + strand at 410.983 kb on - strand at 411.030 kb on + strand at 411.030 kb on + strand at 411.188 kb on + strand, within EX31_RS01895 at 411.188 kb on + strand, within EX31_RS01895 at 411.188 kb on + strand, within EX31_RS01895 at 411.188 kb on + strand, within EX31_RS01895 at 411.193 kb on - strand, within EX31_RS01895 at 411.245 kb on + strand, within EX31_RS01895 at 411.246 kb on - strand, within EX31_RS01895 at 411.254 kb on + strand, within EX31_RS01895 at 411.254 kb on + strand, within EX31_RS01895
Per-strain Table
Position Strand Gene LocusTag Fraction MGL remove 408,905 - EX31_RS01880 0.88 -1.1 408,905 - EX31_RS01880 0.88 -0.5 409,290 - +0.8 409,331 + -0.1 409,340 - +0.4 409,340 - -0.3 409,468 - -1.4 409,639 - -0.0 409,819 - -0.7 409,845 + +0.7 409,975 + EX31_RS01885 0.21 +0.1 410,114 + EX31_RS01885 0.56 -1.6 410,157 - EX31_RS01885 0.67 -1.6 410,193 + EX31_RS01885 0.76 -0.2 410,257 + -1.2 410,328 + -1.2 410,358 + -1.0 410,882 - -0.5 410,972 + +0.0 410,983 - -0.5 411,030 + -0.1 411,030 + +0.9 411,188 + EX31_RS01895 0.14 -0.8 411,188 + EX31_RS01895 0.14 +0.0 411,188 + EX31_RS01895 0.14 -0.5 411,188 + EX31_RS01895 0.14 -1.2 411,193 - EX31_RS01895 0.15 -0.1 411,245 + EX31_RS01895 0.17 -0.8 411,246 - EX31_RS01895 0.17 +0.5 411,254 + EX31_RS01895 0.17 +0.7 411,254 + EX31_RS01895 0.17 -0.2
Or see this region's nucleotide sequence