Strain Fitness in Rahnella sp. WP5 around EX31_RS00740

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS00735 and EX31_RS00740 overlap by 4 nucleotidesEX31_RS00740 and EX31_RS00745 overlap by 4 nucleotides EX31_RS00735: EX31_RS00735 - mechanosensitive ion channel family protein, at 158,239 to 159,315 _RS00735 EX31_RS00740: EX31_RS00740 - malto-oligosyltrehalose synthase, at 159,312 to 161,822 _RS00740 EX31_RS00745: EX31_RS00745 - malto-oligosyltrehalose trehalohydrolase, at 161,819 to 163,606 _RS00745 Position (kb) 159 160 161 162Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 158.335 kb on + strandat 158.335 kb on + strandat 158.335 kb on + strandat 158.336 kb on - strandat 158.378 kb on + strand, within EX31_RS00735at 158.378 kb on + strand, within EX31_RS00735at 158.455 kb on - strand, within EX31_RS00735at 158.460 kb on - strand, within EX31_RS00735at 158.604 kb on - strand, within EX31_RS00735at 158.610 kb on + strand, within EX31_RS00735at 158.610 kb on + strand, within EX31_RS00735at 158.610 kb on + strand, within EX31_RS00735at 158.613 kb on + strand, within EX31_RS00735at 158.681 kb on + strand, within EX31_RS00735at 158.819 kb on + strand, within EX31_RS00735at 158.823 kb on + strand, within EX31_RS00735at 158.824 kb on - strand, within EX31_RS00735at 158.895 kb on + strand, within EX31_RS00735at 158.983 kb on - strand, within EX31_RS00735at 158.986 kb on + strand, within EX31_RS00735at 158.987 kb on - strand, within EX31_RS00735at 158.987 kb on - strand, within EX31_RS00735at 159.077 kb on + strand, within EX31_RS00735at 159.195 kb on + strand, within EX31_RS00735at 159.196 kb on - strand, within EX31_RS00735at 159.199 kb on + strand, within EX31_RS00735at 159.200 kb on - strand, within EX31_RS00735at 159.200 kb on - strand, within EX31_RS00735at 159.222 kb on + strandat 159.231 kb on + strandat 159.279 kb on + strandat 159.279 kb on + strandat 159.289 kb on - strandat 159.313 kb on + strandat 159.373 kb on - strandat 159.373 kb on - strandat 159.373 kb on - strandat 159.389 kb on + strandat 159.590 kb on - strand, within EX31_RS00740at 159.652 kb on + strand, within EX31_RS00740at 159.653 kb on - strand, within EX31_RS00740at 159.802 kb on + strand, within EX31_RS00740at 159.802 kb on + strand, within EX31_RS00740at 159.802 kb on + strand, within EX31_RS00740at 159.802 kb on + strand, within EX31_RS00740at 159.802 kb on + strand, within EX31_RS00740at 159.875 kb on + strand, within EX31_RS00740at 159.876 kb on - strand, within EX31_RS00740at 159.912 kb on + strand, within EX31_RS00740at 160.166 kb on + strand, within EX31_RS00740at 160.635 kb on - strand, within EX31_RS00740at 160.680 kb on + strand, within EX31_RS00740at 160.772 kb on - strand, within EX31_RS00740at 160.802 kb on + strand, within EX31_RS00740at 160.802 kb on + strand, within EX31_RS00740at 160.802 kb on + strand, within EX31_RS00740at 160.803 kb on - strand, within EX31_RS00740at 160.803 kb on - strand, within EX31_RS00740at 160.803 kb on - strand, within EX31_RS00740at 160.862 kb on - strand, within EX31_RS00740at 161.003 kb on + strand, within EX31_RS00740at 161.005 kb on + strand, within EX31_RS00740at 161.005 kb on + strand, within EX31_RS00740at 161.005 kb on + strand, within EX31_RS00740at 161.005 kb on + strand, within EX31_RS00740at 161.005 kb on + strand, within EX31_RS00740at 161.005 kb on + strand, within EX31_RS00740at 161.006 kb on - strand, within EX31_RS00740at 161.006 kb on - strand, within EX31_RS00740at 161.006 kb on - strand, within EX31_RS00740at 161.006 kb on - strand, within EX31_RS00740at 161.006 kb on - strand, within EX31_RS00740at 161.044 kb on + strand, within EX31_RS00740at 161.045 kb on - strand, within EX31_RS00740at 161.136 kb on - strand, within EX31_RS00740at 161.148 kb on + strand, within EX31_RS00740at 161.262 kb on + strand, within EX31_RS00740at 161.262 kb on + strand, within EX31_RS00740at 161.335 kb on + strand, within EX31_RS00740at 161.335 kb on + strand, within EX31_RS00740at 161.335 kb on + strand, within EX31_RS00740at 161.335 kb on + strand, within EX31_RS00740at 161.335 kb on + strand, within EX31_RS00740at 161.335 kb on + strand, within EX31_RS00740at 161.335 kb on + strand, within EX31_RS00740at 161.336 kb on - strand, within EX31_RS00740at 161.336 kb on - strand, within EX31_RS00740at 161.336 kb on - strand, within EX31_RS00740at 161.336 kb on - strand, within EX31_RS00740at 161.336 kb on - strand, within EX31_RS00740at 161.336 kb on - strand, within EX31_RS00740at 161.336 kb on - strand, within EX31_RS00740at 161.336 kb on - strand, within EX31_RS00740at 161.336 kb on - strand, within EX31_RS00740at 161.336 kb on - strand, within EX31_RS00740at 161.336 kb on - strand, within EX31_RS00740at 161.336 kb on - strand, within EX31_RS00740at 161.347 kb on + strand, within EX31_RS00740at 161.483 kb on - strand, within EX31_RS00740at 161.525 kb on + strand, within EX31_RS00740at 161.526 kb on - strand, within EX31_RS00740at 161.607 kb on - strandat 161.669 kb on - strandat 161.713 kb on + strandat 161.739 kb on + strandat 161.750 kb on + strandat 161.951 kb on + strandat 161.987 kb on - strandat 161.987 kb on - strandat 162.063 kb on + strand, within EX31_RS00745at 162.064 kb on - strand, within EX31_RS00745at 162.175 kb on + strand, within EX31_RS00745at 162.317 kb on - strand, within EX31_RS00745at 162.525 kb on + strand, within EX31_RS00745at 162.588 kb on + strand, within EX31_RS00745at 162.591 kb on + strand, within EX31_RS00745at 162.591 kb on + strand, within EX31_RS00745at 162.592 kb on - strand, within EX31_RS00745at 162.592 kb on - strand, within EX31_RS00745at 162.592 kb on - strand, within EX31_RS00745at 162.592 kb on - strand, within EX31_RS00745at 162.685 kb on + strand, within EX31_RS00745at 162.695 kb on + strand, within EX31_RS00745

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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158,335 + -0.3
158,335 + +0.3
158,335 + +1.0
158,336 - +0.2
158,378 + EX31_RS00735 0.13 +0.2
158,378 + EX31_RS00735 0.13 -1.0
158,455 - EX31_RS00735 0.20 -0.7
158,460 - EX31_RS00735 0.21 +0.5
158,604 - EX31_RS00735 0.34 +0.6
158,610 + EX31_RS00735 0.34 +0.5
158,610 + EX31_RS00735 0.34 +0.6
158,610 + EX31_RS00735 0.34 -0.5
158,613 + EX31_RS00735 0.35 +0.6
158,681 + EX31_RS00735 0.41 +0.5
158,819 + EX31_RS00735 0.54 -2.8
158,823 + EX31_RS00735 0.54 -0.3
158,824 - EX31_RS00735 0.54 +0.4
158,895 + EX31_RS00735 0.61 +0.4
158,983 - EX31_RS00735 0.69 -0.2
158,986 + EX31_RS00735 0.69 +0.7
158,987 - EX31_RS00735 0.69 +0.7
158,987 - EX31_RS00735 0.69 -0.2
159,077 + EX31_RS00735 0.78 +0.7
159,195 + EX31_RS00735 0.89 +0.7
159,196 - EX31_RS00735 0.89 +0.1
159,199 + EX31_RS00735 0.89 +2.5
159,200 - EX31_RS00735 0.89 +0.3
159,200 - EX31_RS00735 0.89 +0.3
159,222 + +0.8
159,231 + -0.2
159,279 + -0.3
159,279 + +0.2
159,289 - +3.9
159,313 + -2.2
159,373 - +0.2
159,373 - -1.2
159,373 - +0.5
159,389 + +1.4
159,590 - EX31_RS00740 0.11 +0.2
159,652 + EX31_RS00740 0.14 -0.3
159,653 - EX31_RS00740 0.14 +0.6
159,802 + EX31_RS00740 0.20 +0.2
159,802 + EX31_RS00740 0.20 -0.8
159,802 + EX31_RS00740 0.20 +2.0
159,802 + EX31_RS00740 0.20 -1.3
159,802 + EX31_RS00740 0.20 -0.6
159,875 + EX31_RS00740 0.22 -2.8
159,876 - EX31_RS00740 0.22 +0.8
159,912 + EX31_RS00740 0.24 +0.4
160,166 + EX31_RS00740 0.34 -1.6
160,635 - EX31_RS00740 0.53 +0.6
160,680 + EX31_RS00740 0.54 +0.7
160,772 - EX31_RS00740 0.58 -2.0
160,802 + EX31_RS00740 0.59 +0.9
160,802 + EX31_RS00740 0.59 -0.6
160,802 + EX31_RS00740 0.59 -1.2
160,803 - EX31_RS00740 0.59 -0.1
160,803 - EX31_RS00740 0.59 +1.0
160,803 - EX31_RS00740 0.59 -0.0
160,862 - EX31_RS00740 0.62 -1.0
161,003 + EX31_RS00740 0.67 -0.6
161,005 + EX31_RS00740 0.67 +0.2
161,005 + EX31_RS00740 0.67 +0.7
161,005 + EX31_RS00740 0.67 +0.7
161,005 + EX31_RS00740 0.67 +0.4
161,005 + EX31_RS00740 0.67 +0.1
161,005 + EX31_RS00740 0.67 -0.6
161,006 - EX31_RS00740 0.67 +0.3
161,006 - EX31_RS00740 0.67 +0.3
161,006 - EX31_RS00740 0.67 +2.1
161,006 - EX31_RS00740 0.67 +0.2
161,006 - EX31_RS00740 0.67 +0.1
161,044 + EX31_RS00740 0.69 -0.8
161,045 - EX31_RS00740 0.69 -0.1
161,136 - EX31_RS00740 0.73 +1.5
161,148 + EX31_RS00740 0.73 +0.2
161,262 + EX31_RS00740 0.78 -0.8
161,262 + EX31_RS00740 0.78 +0.3
161,335 + EX31_RS00740 0.81 +0.1
161,335 + EX31_RS00740 0.81 +0.7
161,335 + EX31_RS00740 0.81 -0.2
161,335 + EX31_RS00740 0.81 -1.1
161,335 + EX31_RS00740 0.81 +0.0
161,335 + EX31_RS00740 0.81 -1.7
161,335 + EX31_RS00740 0.81 +0.4
161,336 - EX31_RS00740 0.81 +1.0
161,336 - EX31_RS00740 0.81 +0.2
161,336 - EX31_RS00740 0.81 +0.6
161,336 - EX31_RS00740 0.81 -1.3
161,336 - EX31_RS00740 0.81 +0.6
161,336 - EX31_RS00740 0.81 +1.0
161,336 - EX31_RS00740 0.81 +0.6
161,336 - EX31_RS00740 0.81 -1.3
161,336 - EX31_RS00740 0.81 -0.4
161,336 - EX31_RS00740 0.81 -1.6
161,336 - EX31_RS00740 0.81 -1.2
161,336 - EX31_RS00740 0.81 +0.5
161,347 + EX31_RS00740 0.81 +0.3
161,483 - EX31_RS00740 0.86 -2.3
161,525 + EX31_RS00740 0.88 -0.9
161,526 - EX31_RS00740 0.88 +0.1
161,607 - -1.3
161,669 - +0.1
161,713 + -0.3
161,739 + +0.1
161,750 + -1.2
161,951 + -1.0
161,987 - +0.8
161,987 - -0.2
162,063 + EX31_RS00745 0.14 -1.8
162,064 - EX31_RS00745 0.14 -1.0
162,175 + EX31_RS00745 0.20 -1.1
162,317 - EX31_RS00745 0.28 -0.5
162,525 + EX31_RS00745 0.39 +0.3
162,588 + EX31_RS00745 0.43 -0.1
162,591 + EX31_RS00745 0.43 +2.0
162,591 + EX31_RS00745 0.43 -0.8
162,592 - EX31_RS00745 0.43 -0.5
162,592 - EX31_RS00745 0.43 -1.1
162,592 - EX31_RS00745 0.43 -2.0
162,592 - EX31_RS00745 0.43 +0.6
162,685 + EX31_RS00745 0.48 -0.4
162,695 + EX31_RS00745 0.49 -0.8

Or see this region's nucleotide sequence