Experiment: MGL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS22495 and EX31_RS22500 are separated by 114 nucleotides EX31_RS22500 and EX31_RS22505 are separated by 183 nucleotides EX31_RS22505 and EX31_RS22510 are separated by 62 nucleotides
EX31_RS22495: EX31_RS22495 - prephenate dehydrogenase, at 252,101 to 252,637
_RS22495
EX31_RS22500: EX31_RS22500 - DUF454 family protein, at 252,752 to 253,120
_RS22500
EX31_RS22505: EX31_RS22505 - adenine phosphoribosyltransferase, at 253,304 to 253,855
_RS22505
EX31_RS22510: EX31_RS22510 - alpha-amylase, at 253,918 to 255,981
_RS22510
Position (kb) 253
254 Strain fitness (log2 ratio) -2
-1
0
1
2 at 252.309 kb on + strand, within EX31_RS22495 at 252.309 kb on + strand, within EX31_RS22495 at 252.310 kb on - strand, within EX31_RS22495 at 252.310 kb on - strand, within EX31_RS22495 at 252.310 kb on - strand, within EX31_RS22495 at 252.313 kb on + strand, within EX31_RS22495 at 252.313 kb on + strand, within EX31_RS22495 at 252.313 kb on + strand, within EX31_RS22495 at 252.313 kb on + strand, within EX31_RS22495 at 252.314 kb on - strand, within EX31_RS22495 at 252.314 kb on - strand, within EX31_RS22495 at 252.314 kb on - strand, within EX31_RS22495 at 252.314 kb on - strand, within EX31_RS22495 at 252.314 kb on - strand, within EX31_RS22495 at 252.314 kb on - strand, within EX31_RS22495 at 252.314 kb on - strand, within EX31_RS22495 at 252.314 kb on - strand, within EX31_RS22495 at 252.446 kb on + strand, within EX31_RS22495 at 252.617 kb on + strand at 252.617 kb on + strand at 252.617 kb on + strand at 252.618 kb on - strand at 252.640 kb on + strand at 252.640 kb on + strand at 252.650 kb on + strand at 252.662 kb on + strand at 252.662 kb on + strand at 252.662 kb on + strand at 252.662 kb on + strand at 252.663 kb on - strand at 252.663 kb on - strand at 252.674 kb on - strand at 252.697 kb on + strand at 252.698 kb on - strand at 252.698 kb on - strand at 252.712 kb on + strand at 252.712 kb on + strand at 252.712 kb on + strand at 252.721 kb on + strand at 252.735 kb on + strand at 252.735 kb on + strand at 252.736 kb on - strand at 252.763 kb on - strand at 252.765 kb on + strand at 252.765 kb on + strand at 252.765 kb on + strand at 252.765 kb on + strand at 252.765 kb on + strand at 252.766 kb on - strand at 252.766 kb on - strand at 252.766 kb on - strand at 252.773 kb on - strand at 252.846 kb on + strand, within EX31_RS22500 at 252.847 kb on - strand, within EX31_RS22500 at 252.900 kb on + strand, within EX31_RS22500 at 252.900 kb on + strand, within EX31_RS22500 at 252.901 kb on - strand, within EX31_RS22500 at 252.926 kb on + strand, within EX31_RS22500 at 252.926 kb on + strand, within EX31_RS22500 at 252.926 kb on + strand, within EX31_RS22500 at 252.927 kb on - strand, within EX31_RS22500 at 252.927 kb on - strand, within EX31_RS22500 at 252.970 kb on - strand, within EX31_RS22500 at 253.019 kb on + strand, within EX31_RS22500 at 253.019 kb on + strand, within EX31_RS22500 at 253.019 kb on + strand, within EX31_RS22500 at 253.020 kb on - strand, within EX31_RS22500 at 253.020 kb on - strand, within EX31_RS22500 at 253.032 kb on + strand, within EX31_RS22500 at 253.045 kb on + strand, within EX31_RS22500 at 253.045 kb on + strand, within EX31_RS22500 at 253.046 kb on - strand, within EX31_RS22500 at 253.046 kb on - strand, within EX31_RS22500 at 253.118 kb on + strand at 253.118 kb on + strand at 253.119 kb on - strand at 253.171 kb on - strand at 253.187 kb on + strand at 253.187 kb on + strand at 253.187 kb on + strand at 253.230 kb on + strand at 253.231 kb on - strand at 253.232 kb on + strand at 253.232 kb on + strand at 253.232 kb on + strand at 253.233 kb on - strand at 253.233 kb on - strand at 253.268 kb on + strand at 253.269 kb on - strand at 253.272 kb on + strand at 253.273 kb on - strand at 253.287 kb on + strand at 253.288 kb on - strand at 253.298 kb on + strand at 253.298 kb on + strand at 253.299 kb on - strand at 253.326 kb on + strand at 253.333 kb on + strand at 253.333 kb on + strand at 253.333 kb on + strand at 253.337 kb on - strand at 253.345 kb on + strand at 253.364 kb on + strand, within EX31_RS22505 at 253.369 kb on + strand, within EX31_RS22505 at 253.380 kb on + strand, within EX31_RS22505 at 253.381 kb on - strand, within EX31_RS22505 at 253.424 kb on + strand, within EX31_RS22505 at 253.443 kb on + strand, within EX31_RS22505 at 253.443 kb on + strand, within EX31_RS22505 at 253.601 kb on + strand, within EX31_RS22505 at 253.601 kb on + strand, within EX31_RS22505 at 253.771 kb on + strand, within EX31_RS22505 at 253.816 kb on + strand at 253.816 kb on + strand at 253.826 kb on + strand at 253.826 kb on + strand at 253.826 kb on + strand at 253.826 kb on + strand at 253.920 kb on - strand at 253.951 kb on + strand at 253.952 kb on - strand at 253.957 kb on - strand at 253.985 kb on + strand at 253.985 kb on + strand at 253.985 kb on + strand at 253.986 kb on - strand at 253.986 kb on - strand at 253.986 kb on - strand at 253.986 kb on - strand at 253.986 kb on - strand at 253.988 kb on + strand at 253.988 kb on + strand at 253.988 kb on + strand at 253.988 kb on + strand at 253.988 kb on + strand at 253.988 kb on + strand at 253.989 kb on - strand at 253.989 kb on - strand at 253.989 kb on - strand at 253.989 kb on - strand at 253.989 kb on - strand at 254.078 kb on - strand at 254.186 kb on + strand, within EX31_RS22510 at 254.187 kb on - strand, within EX31_RS22510 at 254.212 kb on + strand, within EX31_RS22510 at 254.240 kb on - strand, within EX31_RS22510 at 254.240 kb on - strand, within EX31_RS22510 at 254.301 kb on - strand, within EX31_RS22510 at 254.301 kb on - strand, within EX31_RS22510 at 254.345 kb on + strand, within EX31_RS22510 at 254.346 kb on - strand, within EX31_RS22510 at 254.346 kb on - strand, within EX31_RS22510 at 254.346 kb on - strand, within EX31_RS22510 at 254.346 kb on - strand, within EX31_RS22510 at 254.618 kb on - strand, within EX31_RS22510 at 254.660 kb on + strand, within EX31_RS22510 at 254.758 kb on - strand, within EX31_RS22510 at 254.761 kb on - strand, within EX31_RS22510 at 254.813 kb on + strand, within EX31_RS22510 at 254.814 kb on - strand, within EX31_RS22510 at 254.814 kb on - strand, within EX31_RS22510 at 254.814 kb on - strand, within EX31_RS22510
Per-strain Table
Position Strand Gene LocusTag Fraction MGL remove 252,309 + EX31_RS22495 0.39 -0.4 252,309 + EX31_RS22495 0.39 -0.6 252,310 - EX31_RS22495 0.39 -1.0 252,310 - EX31_RS22495 0.39 -1.5 252,310 - EX31_RS22495 0.39 +2.3 252,313 + EX31_RS22495 0.39 +0.0 252,313 + EX31_RS22495 0.39 -0.4 252,313 + EX31_RS22495 0.39 -0.3 252,313 + EX31_RS22495 0.39 +0.1 252,314 - EX31_RS22495 0.40 -0.5 252,314 - EX31_RS22495 0.40 -0.5 252,314 - EX31_RS22495 0.40 -1.1 252,314 - EX31_RS22495 0.40 -0.4 252,314 - EX31_RS22495 0.40 +0.7 252,314 - EX31_RS22495 0.40 +0.0 252,314 - EX31_RS22495 0.40 +0.6 252,314 - EX31_RS22495 0.40 -0.1 252,446 + EX31_RS22495 0.64 -2.1 252,617 + +0.3 252,617 + -0.9 252,617 + +0.8 252,618 - +0.1 252,640 + -1.6 252,640 + -0.7 252,650 + +0.5 252,662 + -0.4 252,662 + +0.6 252,662 + -0.5 252,662 + +0.2 252,663 - +1.2 252,663 - -0.7 252,674 - +0.3 252,697 + -0.6 252,698 - +0.8 252,698 - -0.2 252,712 + -0.7 252,712 + -0.0 252,712 + -0.3 252,721 + -0.7 252,735 + -0.4 252,735 + +0.3 252,736 - +0.0 252,763 - +1.0 252,765 + +0.3 252,765 + -0.3 252,765 + -1.1 252,765 + +0.3 252,765 + +0.4 252,766 - -0.6 252,766 - +0.6 252,766 - -0.4 252,773 - +0.7 252,846 + EX31_RS22500 0.25 +0.9 252,847 - EX31_RS22500 0.26 -0.6 252,900 + EX31_RS22500 0.40 -1.4 252,900 + EX31_RS22500 0.40 -0.7 252,901 - EX31_RS22500 0.40 +0.1 252,926 + EX31_RS22500 0.47 -0.1 252,926 + EX31_RS22500 0.47 +0.1 252,926 + EX31_RS22500 0.47 -0.3 252,927 - EX31_RS22500 0.47 -2.0 252,927 - EX31_RS22500 0.47 +0.6 252,970 - EX31_RS22500 0.59 +0.1 253,019 + EX31_RS22500 0.72 +0.3 253,019 + EX31_RS22500 0.72 -0.3 253,019 + EX31_RS22500 0.72 -0.2 253,020 - EX31_RS22500 0.73 +0.1 253,020 - EX31_RS22500 0.73 +0.3 253,032 + EX31_RS22500 0.76 -0.9 253,045 + EX31_RS22500 0.79 +0.2 253,045 + EX31_RS22500 0.79 -0.5 253,046 - EX31_RS22500 0.80 -0.6 253,046 - EX31_RS22500 0.80 -1.7 253,118 + -0.5 253,118 + -0.1 253,119 - +0.3 253,171 - +1.0 253,187 + +0.7 253,187 + -1.5 253,187 + +0.8 253,230 + -0.3 253,231 - +0.3 253,232 + -0.2 253,232 + -0.5 253,232 + -0.8 253,233 - -0.1 253,233 - +0.1 253,268 + +0.2 253,269 - -0.3 253,272 + +0.0 253,273 - +0.0 253,287 + +0.1 253,288 - -0.3 253,298 + -0.8 253,298 + +0.3 253,299 - -0.2 253,326 + +0.2 253,333 + -1.5 253,333 + -0.1 253,333 + -0.5 253,337 - +0.4 253,345 + -1.4 253,364 + EX31_RS22505 0.11 -0.4 253,369 + EX31_RS22505 0.12 -0.8 253,380 + EX31_RS22505 0.14 -0.9 253,381 - EX31_RS22505 0.14 -0.9 253,424 + EX31_RS22505 0.22 -1.2 253,443 + EX31_RS22505 0.25 -1.3 253,443 + EX31_RS22505 0.25 -0.1 253,601 + EX31_RS22505 0.54 -0.5 253,601 + EX31_RS22505 0.54 -0.5 253,771 + EX31_RS22505 0.85 -0.5 253,816 + -2.0 253,816 + -0.5 253,826 + -0.5 253,826 + -0.5 253,826 + -0.4 253,826 + -0.7 253,920 - +0.1 253,951 + -1.0 253,952 - -0.2 253,957 - -0.5 253,985 + +0.1 253,985 + -1.3 253,985 + -1.6 253,986 - -0.8 253,986 - +0.5 253,986 - +0.2 253,986 - -0.2 253,986 - -1.2 253,988 + -1.6 253,988 + -0.8 253,988 + -0.0 253,988 + +0.3 253,988 + +0.8 253,988 + -1.0 253,989 - -0.5 253,989 - -0.2 253,989 - +0.8 253,989 - -0.7 253,989 - -1.4 254,078 - +0.5 254,186 + EX31_RS22510 0.13 -0.5 254,187 - EX31_RS22510 0.13 -0.7 254,212 + EX31_RS22510 0.14 -0.3 254,240 - EX31_RS22510 0.16 -0.4 254,240 - EX31_RS22510 0.16 -0.2 254,301 - EX31_RS22510 0.19 +0.1 254,301 - EX31_RS22510 0.19 +0.7 254,345 + EX31_RS22510 0.21 -0.8 254,346 - EX31_RS22510 0.21 -2.2 254,346 - EX31_RS22510 0.21 -0.4 254,346 - EX31_RS22510 0.21 -1.4 254,346 - EX31_RS22510 0.21 -0.5 254,618 - EX31_RS22510 0.34 +0.3 254,660 + EX31_RS22510 0.36 +0.2 254,758 - EX31_RS22510 0.41 -0.9 254,761 - EX31_RS22510 0.41 -0.7 254,813 + EX31_RS22510 0.43 +0.2 254,814 - EX31_RS22510 0.43 +0.4 254,814 - EX31_RS22510 0.43 +0.4 254,814 - EX31_RS22510 0.43 -0.1
Or see this region's nucleotide sequence