Strain Fitness in Rahnella sp. WP5 around EX31_RS16745

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS16745 and EX31_RS16750 are separated by 253 nucleotidesEX31_RS16750 and EX31_RS16755 overlap by 1 nucleotides EX31_RS16745: EX31_RS16745 - elongation factor Tu, at 1 to 878 _RS16745 EX31_RS16750: EX31_RS16750 - preprotein translocase subunit SecE, at 1,132 to 1,515 _RS16750 EX31_RS16755: EX31_RS16755 - transcription termination/antitermination protein NusG, at 1,515 to 2,060 _RS16755 Position (kb) 0 1Strain fitness (log2 ratio) -2 -1 0 1 2at 0.081 kb on + strandat 0.081 kb on + strandat 0.081 kb on + strandat 0.081 kb on + strandat 0.081 kb on + strandat 0.081 kb on + strandat 0.081 kb on + strandat 0.081 kb on + strandat 0.081 kb on + strandat 0.081 kb on + strandat 0.081 kb on + strandat 0.081 kb on + strandat 0.081 kb on + strandat 0.081 kb on + strandat 0.081 kb on + strandat 0.081 kb on + strandat 0.081 kb on + strandat 0.081 kb on + strandat 0.081 kb on + strandat 0.081 kb on + strandat 0.115 kb on + strand, within EX31_RS16745at 0.115 kb on + strand, within EX31_RS16745at 0.115 kb on + strand, within EX31_RS16745at 0.115 kb on + strand, within EX31_RS16745at 0.115 kb on + strand, within EX31_RS16745at 0.115 kb on + strand, within EX31_RS16745at 0.115 kb on + strand, within EX31_RS16745at 0.115 kb on + strand, within EX31_RS16745at 0.115 kb on + strand, within EX31_RS16745at 0.115 kb on + strand, within EX31_RS16745at 0.115 kb on + strand, within EX31_RS16745at 0.115 kb on + strand, within EX31_RS16745at 0.115 kb on + strand, within EX31_RS16745at 0.115 kb on + strand, within EX31_RS16745at 0.115 kb on + strand, within EX31_RS16745at 0.115 kb on + strand, within EX31_RS16745at 0.115 kb on + strand, within EX31_RS16745at 0.115 kb on + strand, within EX31_RS16745at 0.115 kb on + strand, within EX31_RS16745at 0.115 kb on + strand, within EX31_RS16745at 0.115 kb on + strand, within EX31_RS16745at 0.115 kb on + strand, within EX31_RS16745at 0.115 kb on + strand, within EX31_RS16745at 0.142 kb on + strand, within EX31_RS16745at 0.142 kb on + strand, within EX31_RS16745at 0.174 kb on + strand, within EX31_RS16745at 0.174 kb on + strand, within EX31_RS16745at 0.288 kb on + strand, within EX31_RS16745at 0.288 kb on + strand, within EX31_RS16745at 0.288 kb on + strand, within EX31_RS16745at 0.288 kb on + strand, within EX31_RS16745at 0.289 kb on - strand, within EX31_RS16745at 0.346 kb on + strand, within EX31_RS16745at 0.346 kb on + strand, within EX31_RS16745at 0.346 kb on + strand, within EX31_RS16745at 0.346 kb on + strand, within EX31_RS16745at 0.346 kb on + strand, within EX31_RS16745at 0.346 kb on + strand, within EX31_RS16745at 0.346 kb on + strand, within EX31_RS16745at 0.346 kb on + strand, within EX31_RS16745at 0.346 kb on + strand, within EX31_RS16745at 0.346 kb on + strand, within EX31_RS16745at 0.346 kb on + strand, within EX31_RS16745at 0.346 kb on + strand, within EX31_RS16745at 0.346 kb on + strand, within EX31_RS16745at 0.368 kb on + strand, within EX31_RS16745at 0.368 kb on + strand, within EX31_RS16745at 0.368 kb on + strand, within EX31_RS16745at 0.368 kb on + strand, within EX31_RS16745at 0.368 kb on + strand, within EX31_RS16745at 0.404 kb on + strand, within EX31_RS16745at 0.404 kb on + strand, within EX31_RS16745at 0.404 kb on + strand, within EX31_RS16745at 0.449 kb on + strand, within EX31_RS16745at 0.449 kb on + strand, within EX31_RS16745at 0.449 kb on + strand, within EX31_RS16745at 0.449 kb on + strand, within EX31_RS16745at 0.449 kb on + strand, within EX31_RS16745at 0.449 kb on + strand, within EX31_RS16745at 0.449 kb on + strand, within EX31_RS16745at 0.449 kb on + strand, within EX31_RS16745at 0.449 kb on + strand, within EX31_RS16745at 0.449 kb on + strand, within EX31_RS16745at 0.455 kb on + strand, within EX31_RS16745at 0.886 kb on + strandat 0.912 kb on + strandat 0.915 kb on + strandat 0.922 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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81 + -0.4
81 + +1.5
81 + -1.1
81 + -1.1
81 + +0.9
81 + -0.3
81 + +0.9
81 + -1.3
81 + -0.2
81 + +1.1
81 + -0.3
81 + -0.5
81 + +0.5
81 + -0.3
81 + -1.9
81 + -0.5
81 + -0.8
81 + -0.3
81 + -2.0
81 + -0.3
115 + EX31_RS16745 0.13 -0.5
115 + EX31_RS16745 0.13 +0.2
115 + EX31_RS16745 0.13 -0.1
115 + EX31_RS16745 0.13 -1.7
115 + EX31_RS16745 0.13 -2.2
115 + EX31_RS16745 0.13 -1.2
115 + EX31_RS16745 0.13 +2.2
115 + EX31_RS16745 0.13 +0.3
115 + EX31_RS16745 0.13 +1.0
115 + EX31_RS16745 0.13 +0.1
115 + EX31_RS16745 0.13 +0.3
115 + EX31_RS16745 0.13 -0.8
115 + EX31_RS16745 0.13 -0.3
115 + EX31_RS16745 0.13 +0.6
115 + EX31_RS16745 0.13 -1.4
115 + EX31_RS16745 0.13 -0.7
115 + EX31_RS16745 0.13 -0.5
115 + EX31_RS16745 0.13 -1.6
115 + EX31_RS16745 0.13 -1.6
115 + EX31_RS16745 0.13 -1.7
115 + EX31_RS16745 0.13 -1.3
115 + EX31_RS16745 0.13 -0.1
115 + EX31_RS16745 0.13 -2.0
142 + EX31_RS16745 0.16 -1.3
142 + EX31_RS16745 0.16 -1.8
174 + EX31_RS16745 0.20 -0.9
174 + EX31_RS16745 0.20 -0.0
288 + EX31_RS16745 0.33 -2.1
288 + EX31_RS16745 0.33 -0.4
288 + EX31_RS16745 0.33 -0.2
288 + EX31_RS16745 0.33 -0.5
289 - EX31_RS16745 0.33 -1.0
346 + EX31_RS16745 0.39 -0.8
346 + EX31_RS16745 0.39 +0.0
346 + EX31_RS16745 0.39 -0.3
346 + EX31_RS16745 0.39 +0.1
346 + EX31_RS16745 0.39 -0.5
346 + EX31_RS16745 0.39 -0.3
346 + EX31_RS16745 0.39 -0.5
346 + EX31_RS16745 0.39 +0.0
346 + EX31_RS16745 0.39 +0.5
346 + EX31_RS16745 0.39 +0.2
346 + EX31_RS16745 0.39 -0.7
346 + EX31_RS16745 0.39 -1.2
346 + EX31_RS16745 0.39 -2.0
368 + EX31_RS16745 0.42 +0.0
368 + EX31_RS16745 0.42 -1.2
368 + EX31_RS16745 0.42 -2.7
368 + EX31_RS16745 0.42 -1.0
368 + EX31_RS16745 0.42 -0.4
404 + EX31_RS16745 0.46 -0.2
404 + EX31_RS16745 0.46 +1.3
404 + EX31_RS16745 0.46 -0.0
449 + EX31_RS16745 0.51 +0.8
449 + EX31_RS16745 0.51 -1.7
449 + EX31_RS16745 0.51 -0.5
449 + EX31_RS16745 0.51 +0.7
449 + EX31_RS16745 0.51 -1.1
449 + EX31_RS16745 0.51 -0.5
449 + EX31_RS16745 0.51 -0.1
449 + EX31_RS16745 0.51 -0.4
449 + EX31_RS16745 0.51 +0.6
449 + EX31_RS16745 0.51 +0.4
455 + EX31_RS16745 0.52 -2.4
886 + -0.2
912 + -0.3
915 + -0.1
922 + -1.5

Or see this region's nucleotide sequence