Strain Fitness in Rahnella sp. WP5 around EX31_RS25175

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS05985 and EX31_RS25935 are separated by 65 nucleotidesEX31_RS25935 and EX31_RS25170 are separated by 333 nucleotidesEX31_RS25170 and EX31_RS25175 are separated by 18 nucleotidesEX31_RS25175 and EX31_RS25180 overlap by 37 nucleotidesEX31_RS25180 and EX31_RS05995 are separated by 2 nucleotides EX31_RS05985: EX31_RS05985 - chromosomal replication initiator protein DnaA, at 355,459 to 356,850 _RS05985 EX31_RS25935: EX31_RS25935 - hypothetical protein, at 356,916 to 357,203 _RS25935 EX31_RS25170: EX31_RS25170 - 50S ribosomal protein L34, at 357,537 to 357,677 _RS25170 EX31_RS25175: EX31_RS25175 - ribonuclease P protein component, at 357,696 to 358,055 _RS25175 EX31_RS25180: EX31_RS25180 - membrane protein insertion efficiency factor YidD, at 358,019 to 358,276 _RS25180 EX31_RS05995: EX31_RS05995 - membrane protein insertase YidC, at 358,279 to 359,913 _RS05995 Position (kb) 357 358 359Strain fitness (log2 ratio) -3 -2 -1 0 1at 356.873 kb on - strandat 356.873 kb on - strandat 356.873 kb on - strandat 356.873 kb on - strandat 356.976 kb on - strand, within EX31_RS25935at 356.976 kb on - strand, within EX31_RS25935at 356.976 kb on - strand, within EX31_RS25935at 357.094 kb on + strand, within EX31_RS25935at 357.094 kb on + strand, within EX31_RS25935at 357.094 kb on + strand, within EX31_RS25935at 357.094 kb on + strand, within EX31_RS25935at 357.094 kb on + strand, within EX31_RS25935at 357.094 kb on + strand, within EX31_RS25935at 357.094 kb on + strand, within EX31_RS25935at 357.094 kb on + strand, within EX31_RS25935at 357.094 kb on + strand, within EX31_RS25935at 357.094 kb on + strand, within EX31_RS25935at 357.095 kb on - strand, within EX31_RS25935at 357.095 kb on - strand, within EX31_RS25935at 357.095 kb on - strand, within EX31_RS25935at 357.095 kb on - strand, within EX31_RS25935at 357.095 kb on - strand, within EX31_RS25935at 357.095 kb on - strand, within EX31_RS25935at 357.095 kb on - strand, within EX31_RS25935at 357.095 kb on - strand, within EX31_RS25935at 357.106 kb on - strand, within EX31_RS25935at 357.133 kb on + strand, within EX31_RS25935at 357.133 kb on + strand, within EX31_RS25935at 357.133 kb on + strand, within EX31_RS25935at 357.134 kb on - strand, within EX31_RS25935at 357.152 kb on + strand, within EX31_RS25935at 357.167 kb on + strand, within EX31_RS25935at 357.167 kb on + strand, within EX31_RS25935at 357.167 kb on + strand, within EX31_RS25935at 357.167 kb on + strand, within EX31_RS25935at 357.167 kb on + strand, within EX31_RS25935at 357.167 kb on + strand, within EX31_RS25935at 357.167 kb on + strand, within EX31_RS25935at 357.167 kb on + strand, within EX31_RS25935at 357.167 kb on + strand, within EX31_RS25935at 357.167 kb on + strand, within EX31_RS25935at 357.167 kb on + strand, within EX31_RS25935at 357.167 kb on + strand, within EX31_RS25935at 357.168 kb on - strand, within EX31_RS25935at 357.168 kb on - strand, within EX31_RS25935at 357.168 kb on - strand, within EX31_RS25935at 357.168 kb on - strand, within EX31_RS25935at 357.168 kb on - strand, within EX31_RS25935at 357.168 kb on - strand, within EX31_RS25935at 357.168 kb on - strand, within EX31_RS25935at 357.168 kb on - strand, within EX31_RS25935at 357.168 kb on - strand, within EX31_RS25935at 357.168 kb on - strand, within EX31_RS25935at 357.168 kb on - strand, within EX31_RS25935at 357.168 kb on - strand, within EX31_RS25935at 357.191 kb on - strandat 357.218 kb on + strandat 357.218 kb on + strandat 357.218 kb on + strandat 357.218 kb on + strandat 357.218 kb on + strandat 357.219 kb on - strandat 357.219 kb on - strandat 357.219 kb on - strandat 357.219 kb on - strandat 357.219 kb on - strandat 357.219 kb on - strandat 357.289 kb on + strandat 357.289 kb on + strandat 357.290 kb on - strandat 357.305 kb on - strandat 357.305 kb on - strandat 357.305 kb on - strandat 357.305 kb on - strandat 357.335 kb on - strandat 357.346 kb on + strandat 358.018 kb on + strand, within EX31_RS25175at 358.080 kb on + strand, within EX31_RS25180at 358.080 kb on + strand, within EX31_RS25180at 358.136 kb on + strand, within EX31_RS25180at 358.136 kb on + strand, within EX31_RS25180at 358.136 kb on + strand, within EX31_RS25180at 358.136 kb on + strand, within EX31_RS25180at 358.141 kb on + strand, within EX31_RS25180at 358.141 kb on + strand, within EX31_RS25180at 358.170 kb on + strand, within EX31_RS25180at 358.170 kb on + strand, within EX31_RS25180at 358.170 kb on + strand, within EX31_RS25180at 358.170 kb on + strand, within EX31_RS25180at 358.170 kb on + strand, within EX31_RS25180at 358.170 kb on + strand, within EX31_RS25180at 358.203 kb on + strand, within EX31_RS25180at 358.203 kb on + strand, within EX31_RS25180at 358.203 kb on + strand, within EX31_RS25180

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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356,873 - -3.5
356,873 - -0.7
356,873 - +0.2
356,873 - -0.2
356,976 - EX31_RS25935 0.21 -1.7
356,976 - EX31_RS25935 0.21 +0.2
356,976 - EX31_RS25935 0.21 +0.7
357,094 + EX31_RS25935 0.62 -0.4
357,094 + EX31_RS25935 0.62 -2.0
357,094 + EX31_RS25935 0.62 -0.0
357,094 + EX31_RS25935 0.62 +0.1
357,094 + EX31_RS25935 0.62 -0.1
357,094 + EX31_RS25935 0.62 +0.1
357,094 + EX31_RS25935 0.62 +0.6
357,094 + EX31_RS25935 0.62 +0.0
357,094 + EX31_RS25935 0.62 -0.3
357,094 + EX31_RS25935 0.62 +0.0
357,095 - EX31_RS25935 0.62 +0.1
357,095 - EX31_RS25935 0.62 -0.5
357,095 - EX31_RS25935 0.62 -0.8
357,095 - EX31_RS25935 0.62 -0.9
357,095 - EX31_RS25935 0.62 +0.8
357,095 - EX31_RS25935 0.62 -0.2
357,095 - EX31_RS25935 0.62 +0.5
357,095 - EX31_RS25935 0.62 +0.5
357,106 - EX31_RS25935 0.66 -0.2
357,133 + EX31_RS25935 0.75 -0.6
357,133 + EX31_RS25935 0.75 +0.3
357,133 + EX31_RS25935 0.75 -0.8
357,134 - EX31_RS25935 0.76 +0.0
357,152 + EX31_RS25935 0.82 -0.1
357,167 + EX31_RS25935 0.87 -0.7
357,167 + EX31_RS25935 0.87 -0.7
357,167 + EX31_RS25935 0.87 -0.6
357,167 + EX31_RS25935 0.87 -0.8
357,167 + EX31_RS25935 0.87 +0.1
357,167 + EX31_RS25935 0.87 -1.3
357,167 + EX31_RS25935 0.87 +0.0
357,167 + EX31_RS25935 0.87 -0.7
357,167 + EX31_RS25935 0.87 +0.2
357,167 + EX31_RS25935 0.87 -1.0
357,167 + EX31_RS25935 0.87 +0.0
357,167 + EX31_RS25935 0.87 -0.1
357,168 - EX31_RS25935 0.88 +1.5
357,168 - EX31_RS25935 0.88 -0.1
357,168 - EX31_RS25935 0.88 +0.2
357,168 - EX31_RS25935 0.88 +0.3
357,168 - EX31_RS25935 0.88 +0.2
357,168 - EX31_RS25935 0.88 +0.2
357,168 - EX31_RS25935 0.88 -0.1
357,168 - EX31_RS25935 0.88 -0.4
357,168 - EX31_RS25935 0.88 +0.2
357,168 - EX31_RS25935 0.88 -0.3
357,168 - EX31_RS25935 0.88 +0.4
357,168 - EX31_RS25935 0.88 -0.6
357,191 - -0.2
357,218 + -0.0
357,218 + -1.7
357,218 + +0.7
357,218 + +0.2
357,218 + +0.3
357,219 - +0.1
357,219 - +0.7
357,219 - -0.2
357,219 - +0.1
357,219 - +0.5
357,219 - +0.4
357,289 + +1.1
357,289 + -0.1
357,290 - -1.1
357,305 - +0.1
357,305 - -0.1
357,305 - +0.0
357,305 - +0.2
357,335 - +0.2
357,346 + +0.1
358,018 + EX31_RS25175 0.89 -0.0
358,080 + EX31_RS25180 0.24 -0.6
358,080 + EX31_RS25180 0.24 +0.1
358,136 + EX31_RS25180 0.45 -2.0
358,136 + EX31_RS25180 0.45 -1.2
358,136 + EX31_RS25180 0.45 -0.0
358,136 + EX31_RS25180 0.45 +0.3
358,141 + EX31_RS25180 0.47 +0.0
358,141 + EX31_RS25180 0.47 +0.0
358,170 + EX31_RS25180 0.59 -0.8
358,170 + EX31_RS25180 0.59 -0.2
358,170 + EX31_RS25180 0.59 -0.1
358,170 + EX31_RS25180 0.59 +0.5
358,170 + EX31_RS25180 0.59 -0.2
358,170 + EX31_RS25180 0.59 -1.1
358,203 + EX31_RS25180 0.71 -1.0
358,203 + EX31_RS25180 0.71 -0.5
358,203 + EX31_RS25180 0.71 -2.7

Or see this region's nucleotide sequence