Experiment: MGL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS22455 and EX31_RS22460 are separated by 124 nucleotides EX31_RS22460 and EX31_RS22465 are separated by 20 nucleotides EX31_RS22465 and EX31_RS22470 are separated by 120 nucleotides
EX31_RS22455: EX31_RS22455 - metal ABC transporter substrate-binding protein, at 241,543 to 242,421
_RS22455
EX31_RS22460: EX31_RS22460 - 50S ribosomal protein L36, at 242,546 to 242,686
_RS22460
EX31_RS22465: EX31_RS22465 - type B 50S ribosomal protein L31, at 242,707 to 242,961
_RS22465
EX31_RS22470: EX31_RS22470 - multidrug efflux RND transporter permease subunit, at 243,082 to 246,234
_RS22470
Position (kb) 242
243 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 241.716 kb on + strand, within EX31_RS22455 at 241.716 kb on + strand, within EX31_RS22455 at 241.717 kb on - strand, within EX31_RS22455 at 241.734 kb on + strand, within EX31_RS22455 at 241.734 kb on + strand, within EX31_RS22455 at 241.734 kb on + strand, within EX31_RS22455 at 241.830 kb on + strand, within EX31_RS22455 at 241.830 kb on + strand, within EX31_RS22455 at 241.830 kb on + strand, within EX31_RS22455 at 241.830 kb on + strand, within EX31_RS22455 at 241.831 kb on - strand, within EX31_RS22455 at 241.831 kb on - strand, within EX31_RS22455 at 241.831 kb on - strand, within EX31_RS22455 at 241.844 kb on + strand, within EX31_RS22455 at 241.845 kb on - strand, within EX31_RS22455 at 241.862 kb on + strand, within EX31_RS22455 at 241.943 kb on - strand, within EX31_RS22455 at 241.950 kb on + strand, within EX31_RS22455 at 241.996 kb on + strand, within EX31_RS22455 at 242.020 kb on + strand, within EX31_RS22455 at 242.020 kb on + strand, within EX31_RS22455 at 242.020 kb on + strand, within EX31_RS22455 at 242.020 kb on + strand, within EX31_RS22455 at 242.021 kb on - strand, within EX31_RS22455 at 242.021 kb on - strand, within EX31_RS22455 at 242.021 kb on - strand, within EX31_RS22455 at 242.021 kb on - strand, within EX31_RS22455 at 242.021 kb on - strand, within EX31_RS22455 at 242.021 kb on - strand, within EX31_RS22455 at 242.022 kb on + strand, within EX31_RS22455 at 242.022 kb on + strand, within EX31_RS22455 at 242.091 kb on + strand, within EX31_RS22455 at 242.091 kb on + strand, within EX31_RS22455 at 242.122 kb on + strand, within EX31_RS22455 at 242.245 kb on + strand, within EX31_RS22455 at 242.245 kb on + strand, within EX31_RS22455 at 242.245 kb on + strand, within EX31_RS22455 at 242.327 kb on - strand, within EX31_RS22455 at 242.368 kb on + strand at 242.368 kb on + strand at 242.368 kb on + strand at 242.368 kb on + strand at 242.368 kb on + strand at 242.368 kb on + strand at 242.369 kb on - strand at 242.369 kb on - strand at 242.383 kb on - strand at 242.388 kb on + strand at 242.419 kb on + strand at 242.419 kb on + strand at 242.419 kb on + strand at 242.419 kb on + strand at 242.420 kb on - strand at 242.441 kb on + strand at 242.441 kb on + strand at 242.458 kb on + strand at 242.458 kb on + strand at 242.458 kb on + strand at 242.458 kb on + strand at 242.458 kb on + strand at 242.458 kb on + strand at 242.458 kb on + strand at 242.458 kb on + strand at 242.458 kb on + strand at 242.458 kb on + strand at 242.458 kb on + strand at 242.458 kb on + strand at 242.458 kb on + strand at 242.459 kb on - strand at 242.459 kb on - strand at 242.459 kb on - strand at 242.459 kb on - strand at 242.459 kb on - strand at 242.459 kb on - strand at 242.459 kb on - strand at 242.459 kb on - strand at 242.470 kb on + strand at 242.470 kb on + strand at 242.470 kb on + strand at 242.470 kb on + strand at 242.470 kb on + strand at 242.470 kb on + strand at 242.470 kb on + strand at 242.470 kb on + strand at 242.471 kb on - strand at 242.471 kb on - strand at 242.475 kb on + strand at 242.475 kb on + strand at 242.520 kb on + strand at 242.564 kb on - strand, within EX31_RS22460 at 242.564 kb on - strand, within EX31_RS22460 at 242.570 kb on + strand, within EX31_RS22460 at 242.578 kb on + strand, within EX31_RS22460 at 242.579 kb on - strand, within EX31_RS22460 at 242.608 kb on - strand, within EX31_RS22460 at 242.630 kb on + strand, within EX31_RS22460 at 242.631 kb on - strand, within EX31_RS22460 at 242.666 kb on + strand, within EX31_RS22460 at 242.666 kb on + strand, within EX31_RS22460 at 242.666 kb on + strand, within EX31_RS22460 at 242.708 kb on + strand at 242.742 kb on + strand, within EX31_RS22465 at 242.792 kb on + strand, within EX31_RS22465 at 242.792 kb on + strand, within EX31_RS22465 at 242.792 kb on + strand, within EX31_RS22465 at 242.792 kb on + strand, within EX31_RS22465 at 242.793 kb on - strand, within EX31_RS22465 at 242.793 kb on - strand, within EX31_RS22465 at 242.795 kb on + strand, within EX31_RS22465 at 242.829 kb on + strand, within EX31_RS22465 at 242.829 kb on + strand, within EX31_RS22465 at 242.831 kb on + strand, within EX31_RS22465 at 242.831 kb on + strand, within EX31_RS22465 at 242.831 kb on + strand, within EX31_RS22465 at 242.831 kb on + strand, within EX31_RS22465 at 242.832 kb on - strand, within EX31_RS22465 at 242.832 kb on - strand, within EX31_RS22465 at 242.832 kb on - strand, within EX31_RS22465 at 242.832 kb on - strand, within EX31_RS22465 at 242.837 kb on + strand, within EX31_RS22465 at 242.898 kb on - strand, within EX31_RS22465 at 242.949 kb on + strand at 242.949 kb on + strand at 242.962 kb on - strand at 243.051 kb on - strand at 243.051 kb on - strand at 243.066 kb on + strand at 243.067 kb on - strand at 243.084 kb on - strand at 243.100 kb on + strand at 243.101 kb on - strand at 243.101 kb on - strand at 243.112 kb on - strand at 243.112 kb on - strand at 243.112 kb on - strand at 243.112 kb on - strand at 243.112 kb on - strand at 243.112 kb on - strand at 243.218 kb on - strand at 243.230 kb on - strand at 243.230 kb on - strand at 243.230 kb on - strand at 243.230 kb on - strand at 243.230 kb on - strand at 243.230 kb on - strand at 243.280 kb on - strand at 243.410 kb on - strand, within EX31_RS22470 at 243.410 kb on - strand, within EX31_RS22470 at 243.462 kb on - strand, within EX31_RS22470 at 243.462 kb on - strand, within EX31_RS22470 at 243.462 kb on - strand, within EX31_RS22470 at 243.462 kb on - strand, within EX31_RS22470 at 243.462 kb on - strand, within EX31_RS22470 at 243.464 kb on - strand, within EX31_RS22470 at 243.464 kb on - strand, within EX31_RS22470 at 243.464 kb on - strand, within EX31_RS22470 at 243.464 kb on - strand, within EX31_RS22470 at 243.464 kb on - strand, within EX31_RS22470 at 243.464 kb on - strand, within EX31_RS22470 at 243.464 kb on - strand, within EX31_RS22470 at 243.464 kb on - strand, within EX31_RS22470 at 243.490 kb on - strand, within EX31_RS22470 at 243.490 kb on - strand, within EX31_RS22470 at 243.490 kb on - strand, within EX31_RS22470 at 243.490 kb on - strand, within EX31_RS22470 at 243.499 kb on - strand, within EX31_RS22470 at 243.499 kb on - strand, within EX31_RS22470 at 243.499 kb on - strand, within EX31_RS22470 at 243.499 kb on - strand, within EX31_RS22470 at 243.564 kb on - strand, within EX31_RS22470 at 243.603 kb on + strand, within EX31_RS22470 at 243.604 kb on - strand, within EX31_RS22470 at 243.608 kb on + strand, within EX31_RS22470 at 243.608 kb on + strand, within EX31_RS22470 at 243.609 kb on - strand, within EX31_RS22470 at 243.609 kb on - strand, within EX31_RS22470 at 243.609 kb on - strand, within EX31_RS22470 at 243.609 kb on - strand, within EX31_RS22470 at 243.609 kb on - strand, within EX31_RS22470 at 243.690 kb on + strand, within EX31_RS22470 at 243.691 kb on - strand, within EX31_RS22470 at 243.781 kb on - strand, within EX31_RS22470 at 243.781 kb on - strand, within EX31_RS22470 at 243.781 kb on - strand, within EX31_RS22470 at 243.783 kb on - strand, within EX31_RS22470 at 243.783 kb on - strand, within EX31_RS22470 at 243.783 kb on - strand, within EX31_RS22470 at 243.869 kb on + strand, within EX31_RS22470 at 243.870 kb on - strand, within EX31_RS22470 at 243.870 kb on - strand, within EX31_RS22470 at 243.870 kb on - strand, within EX31_RS22470 at 243.897 kb on + strand, within EX31_RS22470 at 243.897 kb on + strand, within EX31_RS22470 at 243.897 kb on + strand, within EX31_RS22470 at 243.898 kb on - strand, within EX31_RS22470 at 243.898 kb on - strand, within EX31_RS22470 at 243.898 kb on - strand, within EX31_RS22470 at 243.898 kb on - strand, within EX31_RS22470 at 243.898 kb on - strand, within EX31_RS22470 at 243.898 kb on - strand, within EX31_RS22470 at 243.898 kb on - strand, within EX31_RS22470 at 243.898 kb on - strand, within EX31_RS22470 at 243.898 kb on - strand, within EX31_RS22470 at 243.902 kb on + strand, within EX31_RS22470 at 243.903 kb on - strand, within EX31_RS22470 at 243.903 kb on - strand, within EX31_RS22470 at 243.907 kb on - strand, within EX31_RS22470 at 243.907 kb on - strand, within EX31_RS22470 at 243.924 kb on - strand, within EX31_RS22470 at 243.924 kb on - strand, within EX31_RS22470 at 243.924 kb on - strand, within EX31_RS22470 at 243.924 kb on - strand, within EX31_RS22470 at 243.924 kb on - strand, within EX31_RS22470
Per-strain Table
Position Strand Gene LocusTag Fraction MGL remove 241,716 + EX31_RS22455 0.20 +1.1 241,716 + EX31_RS22455 0.20 +1.6 241,717 - EX31_RS22455 0.20 -1.9 241,734 + EX31_RS22455 0.22 -0.1 241,734 + EX31_RS22455 0.22 -1.2 241,734 + EX31_RS22455 0.22 -0.7 241,830 + EX31_RS22455 0.33 -0.1 241,830 + EX31_RS22455 0.33 -0.7 241,830 + EX31_RS22455 0.33 +0.5 241,830 + EX31_RS22455 0.33 -0.3 241,831 - EX31_RS22455 0.33 +0.3 241,831 - EX31_RS22455 0.33 +0.2 241,831 - EX31_RS22455 0.33 -0.6 241,844 + EX31_RS22455 0.34 -1.0 241,845 - EX31_RS22455 0.34 +0.0 241,862 + EX31_RS22455 0.36 -2.8 241,943 - EX31_RS22455 0.46 -0.0 241,950 + EX31_RS22455 0.46 -0.5 241,996 + EX31_RS22455 0.52 -0.2 242,020 + EX31_RS22455 0.54 -1.1 242,020 + EX31_RS22455 0.54 -3.1 242,020 + EX31_RS22455 0.54 +0.6 242,020 + EX31_RS22455 0.54 -0.8 242,021 - EX31_RS22455 0.54 -0.7 242,021 - EX31_RS22455 0.54 -0.1 242,021 - EX31_RS22455 0.54 -1.0 242,021 - EX31_RS22455 0.54 +0.7 242,021 - EX31_RS22455 0.54 -0.5 242,021 - EX31_RS22455 0.54 +0.2 242,022 + EX31_RS22455 0.54 -0.4 242,022 + EX31_RS22455 0.54 +0.9 242,091 + EX31_RS22455 0.62 -0.5 242,091 + EX31_RS22455 0.62 -0.9 242,122 + EX31_RS22455 0.66 +2.3 242,245 + EX31_RS22455 0.80 -0.0 242,245 + EX31_RS22455 0.80 -0.4 242,245 + EX31_RS22455 0.80 +0.6 242,327 - EX31_RS22455 0.89 -1.8 242,368 + +1.0 242,368 + -0.1 242,368 + -0.2 242,368 + -1.1 242,368 + +0.2 242,368 + -0.5 242,369 - -1.3 242,369 - -2.1 242,383 - +0.1 242,388 + +1.1 242,419 + +0.6 242,419 + -0.6 242,419 + -0.0 242,419 + -0.8 242,420 - +1.4 242,441 + +0.4 242,441 + +0.4 242,458 + -0.6 242,458 + +0.3 242,458 + -1.1 242,458 + -0.5 242,458 + +0.4 242,458 + -0.4 242,458 + -1.2 242,458 + +0.8 242,458 + -1.4 242,458 + -0.2 242,458 + +0.7 242,458 + -0.1 242,458 + +0.1 242,459 - -0.7 242,459 - +0.1 242,459 - -1.7 242,459 - -0.6 242,459 - -1.4 242,459 - -0.2 242,459 - -0.3 242,459 - -0.4 242,470 + -0.9 242,470 + +0.8 242,470 + -0.3 242,470 + -2.0 242,470 + -0.8 242,470 + -1.7 242,470 + +0.9 242,470 + +1.2 242,471 - -0.7 242,471 - -0.1 242,475 + -0.6 242,475 + -0.5 242,520 + +0.3 242,564 - EX31_RS22460 0.13 -0.4 242,564 - EX31_RS22460 0.13 +0.0 242,570 + EX31_RS22460 0.17 -0.5 242,578 + EX31_RS22460 0.23 +0.8 242,579 - EX31_RS22460 0.23 -0.4 242,608 - EX31_RS22460 0.44 -0.3 242,630 + EX31_RS22460 0.60 -1.0 242,631 - EX31_RS22460 0.60 -1.8 242,666 + EX31_RS22460 0.85 +1.1 242,666 + EX31_RS22460 0.85 +0.0 242,666 + EX31_RS22460 0.85 -0.3 242,708 + +0.9 242,742 + EX31_RS22465 0.14 -0.2 242,792 + EX31_RS22465 0.33 -0.5 242,792 + EX31_RS22465 0.33 -2.4 242,792 + EX31_RS22465 0.33 +1.3 242,792 + EX31_RS22465 0.33 -0.6 242,793 - EX31_RS22465 0.34 +0.1 242,793 - EX31_RS22465 0.34 -0.3 242,795 + EX31_RS22465 0.35 -0.2 242,829 + EX31_RS22465 0.48 -0.5 242,829 + EX31_RS22465 0.48 -0.3 242,831 + EX31_RS22465 0.49 +1.1 242,831 + EX31_RS22465 0.49 +0.5 242,831 + EX31_RS22465 0.49 -1.8 242,831 + EX31_RS22465 0.49 -0.3 242,832 - EX31_RS22465 0.49 +2.0 242,832 - EX31_RS22465 0.49 -0.1 242,832 - EX31_RS22465 0.49 +0.9 242,832 - EX31_RS22465 0.49 +0.1 242,837 + EX31_RS22465 0.51 +0.4 242,898 - EX31_RS22465 0.75 -0.6 242,949 + +0.7 242,949 + -0.6 242,962 - -0.2 243,051 - -0.2 243,051 - -0.1 243,066 + -0.4 243,067 - -0.7 243,084 - +1.6 243,100 + +2.0 243,101 - -0.7 243,101 - +0.4 243,112 - +0.0 243,112 - -1.0 243,112 - -0.8 243,112 - +0.0 243,112 - +0.7 243,112 - +0.7 243,218 - -1.0 243,230 - +0.8 243,230 - +0.6 243,230 - -1.8 243,230 - +0.3 243,230 - -0.3 243,230 - -1.4 243,280 - -0.2 243,410 - EX31_RS22470 0.10 -1.0 243,410 - EX31_RS22470 0.10 +0.2 243,462 - EX31_RS22470 0.12 +2.0 243,462 - EX31_RS22470 0.12 +0.7 243,462 - EX31_RS22470 0.12 -0.7 243,462 - EX31_RS22470 0.12 +0.3 243,462 - EX31_RS22470 0.12 -0.0 243,464 - EX31_RS22470 0.12 -0.9 243,464 - EX31_RS22470 0.12 -0.4 243,464 - EX31_RS22470 0.12 +0.1 243,464 - EX31_RS22470 0.12 -0.5 243,464 - EX31_RS22470 0.12 -0.6 243,464 - EX31_RS22470 0.12 +0.9 243,464 - EX31_RS22470 0.12 -0.1 243,464 - EX31_RS22470 0.12 -0.0 243,490 - EX31_RS22470 0.13 -0.8 243,490 - EX31_RS22470 0.13 -0.7 243,490 - EX31_RS22470 0.13 +0.2 243,490 - EX31_RS22470 0.13 +0.1 243,499 - EX31_RS22470 0.13 +1.0 243,499 - EX31_RS22470 0.13 +0.2 243,499 - EX31_RS22470 0.13 +0.8 243,499 - EX31_RS22470 0.13 -0.4 243,564 - EX31_RS22470 0.15 +1.6 243,603 + EX31_RS22470 0.17 -0.6 243,604 - EX31_RS22470 0.17 -0.3 243,608 + EX31_RS22470 0.17 -0.5 243,608 + EX31_RS22470 0.17 -0.9 243,609 - EX31_RS22470 0.17 +0.4 243,609 - EX31_RS22470 0.17 +0.2 243,609 - EX31_RS22470 0.17 -0.8 243,609 - EX31_RS22470 0.17 -0.1 243,609 - EX31_RS22470 0.17 -0.4 243,690 + EX31_RS22470 0.19 +0.1 243,691 - EX31_RS22470 0.19 -0.8 243,781 - EX31_RS22470 0.22 -0.0 243,781 - EX31_RS22470 0.22 -0.5 243,781 - EX31_RS22470 0.22 -3.8 243,783 - EX31_RS22470 0.22 +0.2 243,783 - EX31_RS22470 0.22 +0.5 243,783 - EX31_RS22470 0.22 -0.6 243,869 + EX31_RS22470 0.25 +0.0 243,870 - EX31_RS22470 0.25 +0.3 243,870 - EX31_RS22470 0.25 +0.1 243,870 - EX31_RS22470 0.25 -0.2 243,897 + EX31_RS22470 0.26 -0.3 243,897 + EX31_RS22470 0.26 -1.7 243,897 + EX31_RS22470 0.26 +0.4 243,898 - EX31_RS22470 0.26 -1.3 243,898 - EX31_RS22470 0.26 +0.0 243,898 - EX31_RS22470 0.26 -1.5 243,898 - EX31_RS22470 0.26 -1.4 243,898 - EX31_RS22470 0.26 +0.1 243,898 - EX31_RS22470 0.26 +0.6 243,898 - EX31_RS22470 0.26 +0.2 243,898 - EX31_RS22470 0.26 -0.8 243,898 - EX31_RS22470 0.26 +0.5 243,902 + EX31_RS22470 0.26 -2.1 243,903 - EX31_RS22470 0.26 -0.2 243,903 - EX31_RS22470 0.26 +0.8 243,907 - EX31_RS22470 0.26 +1.0 243,907 - EX31_RS22470 0.26 +0.3 243,924 - EX31_RS22470 0.27 +1.4 243,924 - EX31_RS22470 0.27 +0.5 243,924 - EX31_RS22470 0.27 -1.7 243,924 - EX31_RS22470 0.27 -2.2 243,924 - EX31_RS22470 0.27 -1.2
Or see this region's nucleotide sequence