Experiment: MGL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS13975 and EX31_RS13980 are separated by 515 nucleotides EX31_RS13980 and EX31_RS13985 are separated by 96 nucleotides EX31_RS13985 and EX31_RS13990 are separated by 154 nucleotides
EX31_RS13975: EX31_RS13975 - EAL domain-containing protein, at 59,017 to 59,745
_RS13975
EX31_RS13980: EX31_RS13980 - lipoate--protein ligase A, at 60,261 to 61,274
_RS13980
EX31_RS13985: EX31_RS13985 - endopeptidase, at 61,371 to 61,850
_RS13985
EX31_RS13990: EX31_RS13990 - 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF, at 62,005 to 62,394
_RS13990
Position (kb) 60
61
62 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 59.424 kb on + strand, within EX31_RS13975 at 59.424 kb on + strand, within EX31_RS13975 at 59.424 kb on + strand, within EX31_RS13975 at 59.425 kb on - strand, within EX31_RS13975 at 59.425 kb on - strand, within EX31_RS13975 at 59.425 kb on - strand, within EX31_RS13975 at 59.425 kb on - strand, within EX31_RS13975 at 59.425 kb on - strand, within EX31_RS13975 at 59.468 kb on - strand, within EX31_RS13975 at 59.506 kb on - strand, within EX31_RS13975 at 59.548 kb on + strand, within EX31_RS13975 at 59.575 kb on + strand, within EX31_RS13975 at 59.602 kb on + strand, within EX31_RS13975 at 59.603 kb on - strand, within EX31_RS13975 at 59.689 kb on - strand at 59.691 kb on - strand at 59.691 kb on - strand at 59.708 kb on + strand at 59.781 kb on + strand at 59.782 kb on - strand at 59.782 kb on - strand at 59.811 kb on + strand at 59.811 kb on + strand at 59.812 kb on - strand at 59.845 kb on - strand at 59.860 kb on - strand at 59.860 kb on - strand at 59.884 kb on + strand at 59.885 kb on - strand at 59.885 kb on - strand at 59.885 kb on - strand at 59.885 kb on - strand at 59.885 kb on - strand at 59.885 kb on - strand at 59.885 kb on - strand at 59.885 kb on - strand at 59.885 kb on - strand at 59.890 kb on + strand at 59.948 kb on - strand at 59.968 kb on + strand at 59.969 kb on - strand at 59.969 kb on - strand at 59.969 kb on - strand at 59.970 kb on + strand at 59.971 kb on - strand at 59.971 kb on - strand at 59.971 kb on - strand at 60.104 kb on + strand at 60.105 kb on - strand at 60.120 kb on + strand at 60.127 kb on + strand at 60.127 kb on + strand at 60.127 kb on + strand at 60.129 kb on + strand at 60.130 kb on - strand at 60.201 kb on + strand at 60.206 kb on + strand at 60.209 kb on + strand at 60.263 kb on - strand at 60.270 kb on - strand at 60.270 kb on - strand at 60.514 kb on - strand, within EX31_RS13980 at 60.630 kb on + strand, within EX31_RS13980 at 60.644 kb on - strand, within EX31_RS13980 at 60.785 kb on - strand, within EX31_RS13980 at 60.901 kb on - strand, within EX31_RS13980 at 60.930 kb on - strand, within EX31_RS13980 at 60.987 kb on - strand, within EX31_RS13980 at 61.173 kb on + strand at 61.205 kb on + strand at 61.205 kb on + strand at 61.215 kb on + strand at 61.280 kb on - strand at 61.310 kb on - strand at 61.408 kb on + strand at 61.461 kb on - strand, within EX31_RS13985 at 61.480 kb on + strand, within EX31_RS13985 at 61.480 kb on + strand, within EX31_RS13985 at 61.480 kb on + strand, within EX31_RS13985 at 61.481 kb on - strand, within EX31_RS13985 at 61.481 kb on - strand, within EX31_RS13985 at 61.481 kb on - strand, within EX31_RS13985 at 61.531 kb on - strand, within EX31_RS13985 at 61.531 kb on - strand, within EX31_RS13985 at 61.627 kb on + strand, within EX31_RS13985 at 61.671 kb on + strand, within EX31_RS13985 at 61.742 kb on + strand, within EX31_RS13985 at 61.743 kb on - strand, within EX31_RS13985 at 61.743 kb on - strand, within EX31_RS13985 at 61.743 kb on - strand, within EX31_RS13985 at 61.743 kb on - strand, within EX31_RS13985 at 61.743 kb on - strand, within EX31_RS13985 at 61.743 kb on - strand, within EX31_RS13985 at 61.825 kb on + strand at 61.825 kb on + strand at 61.826 kb on - strand at 61.826 kb on - strand at 61.826 kb on - strand at 61.870 kb on - strand at 61.870 kb on - strand at 61.870 kb on - strand at 61.870 kb on - strand at 61.901 kb on - strand at 61.928 kb on + strand at 61.929 kb on - strand at 61.929 kb on - strand at 61.935 kb on + strand at 61.936 kb on - strand at 61.974 kb on + strand at 61.974 kb on + strand at 61.975 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MGL remove 59,424 + EX31_RS13975 0.56 -2.7 59,424 + EX31_RS13975 0.56 -2.6 59,424 + EX31_RS13975 0.56 +1.9 59,425 - EX31_RS13975 0.56 -0.2 59,425 - EX31_RS13975 0.56 -0.0 59,425 - EX31_RS13975 0.56 +1.6 59,425 - EX31_RS13975 0.56 -0.4 59,425 - EX31_RS13975 0.56 +0.5 59,468 - EX31_RS13975 0.62 -1.0 59,506 - EX31_RS13975 0.67 -0.6 59,548 + EX31_RS13975 0.73 -2.7 59,575 + EX31_RS13975 0.77 -0.0 59,602 + EX31_RS13975 0.80 +0.0 59,603 - EX31_RS13975 0.80 +0.9 59,689 - +0.5 59,691 - +0.6 59,691 - +0.0 59,708 + -0.4 59,781 + +1.6 59,782 - +0.3 59,782 - -2.4 59,811 + -1.9 59,811 + +0.3 59,812 - +0.6 59,845 - +0.7 59,860 - -1.0 59,860 - +0.3 59,884 + +0.2 59,885 - +0.1 59,885 - +1.7 59,885 - -1.3 59,885 - +0.8 59,885 - -0.6 59,885 - +0.4 59,885 - -1.5 59,885 - -0.2 59,885 - +0.0 59,890 + -1.2 59,948 - +1.9 59,968 + -0.1 59,969 - +0.1 59,969 - +0.4 59,969 - +0.7 59,970 + -3.3 59,971 - +0.4 59,971 - +0.7 59,971 - +1.3 60,104 + -0.7 60,105 - +0.7 60,120 + -0.3 60,127 + -0.0 60,127 + -1.4 60,127 + -0.6 60,129 + +0.9 60,130 - +1.1 60,201 + -0.2 60,206 + +1.0 60,209 + +0.6 60,263 - -1.9 60,270 - -0.3 60,270 - -0.1 60,514 - EX31_RS13980 0.25 +0.7 60,630 + EX31_RS13980 0.36 +0.8 60,644 - EX31_RS13980 0.38 +1.0 60,785 - EX31_RS13980 0.52 -0.2 60,901 - EX31_RS13980 0.63 +1.5 60,930 - EX31_RS13980 0.66 +0.9 60,987 - EX31_RS13980 0.72 -1.1 61,173 + -0.0 61,205 + -0.0 61,205 + +0.5 61,215 + -1.7 61,280 - -0.1 61,310 - +0.8 61,408 + -1.9 61,461 - EX31_RS13985 0.19 +0.0 61,480 + EX31_RS13985 0.23 -0.0 61,480 + EX31_RS13985 0.23 -2.3 61,480 + EX31_RS13985 0.23 -0.1 61,481 - EX31_RS13985 0.23 -1.0 61,481 - EX31_RS13985 0.23 -1.8 61,481 - EX31_RS13985 0.23 +1.1 61,531 - EX31_RS13985 0.33 -2.0 61,531 - EX31_RS13985 0.33 +0.3 61,627 + EX31_RS13985 0.53 -2.6 61,671 + EX31_RS13985 0.62 -1.6 61,742 + EX31_RS13985 0.77 -0.2 61,743 - EX31_RS13985 0.78 +0.2 61,743 - EX31_RS13985 0.78 +0.3 61,743 - EX31_RS13985 0.78 +0.4 61,743 - EX31_RS13985 0.78 +0.9 61,743 - EX31_RS13985 0.78 +1.0 61,743 - EX31_RS13985 0.78 -0.8 61,825 + -0.9 61,825 + -1.8 61,826 - -1.1 61,826 - +0.2 61,826 - +1.9 61,870 - +0.0 61,870 - -1.6 61,870 - -0.3 61,870 - -0.0 61,901 - -0.8 61,928 + -0.4 61,929 - -0.7 61,929 - -0.4 61,935 + -0.3 61,936 - -1.3 61,974 + +0.9 61,974 + -2.0 61,975 - +1.5
Or see this region's nucleotide sequence