Strain Fitness in Rahnella sp. WP5 around EX31_RS11240

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS11235 and EX31_RS11240 are separated by 15 nucleotidesEX31_RS11240 and EX31_RS11245 are separated by 15 nucleotides EX31_RS11235: EX31_RS11235 - ABC transporter substrate-binding protein, at 180,368 to 181,300 _RS11235 EX31_RS11240: EX31_RS11240 - GNAT family N-acetyltransferase, at 181,316 to 181,831 _RS11240 EX31_RS11245: EX31_RS11245 - amino acid ABC transporter permease, at 181,847 to 182,761 _RS11245 Position (kb) 181 182Strain fitness (log2 ratio) -3 -2 -1 0 1at 180.339 kb on + strandat 180.340 kb on - strandat 180.363 kb on + strandat 180.379 kb on + strandat 180.414 kb on + strandat 180.415 kb on - strandat 180.451 kb on + strandat 180.451 kb on + strandat 180.452 kb on - strandat 180.529 kb on + strand, within EX31_RS11235at 180.529 kb on + strand, within EX31_RS11235at 180.530 kb on - strand, within EX31_RS11235at 180.599 kb on + strand, within EX31_RS11235at 180.614 kb on - strand, within EX31_RS11235at 180.666 kb on + strand, within EX31_RS11235at 180.749 kb on + strand, within EX31_RS11235at 180.750 kb on - strand, within EX31_RS11235at 180.758 kb on - strand, within EX31_RS11235at 180.775 kb on + strand, within EX31_RS11235at 180.776 kb on - strand, within EX31_RS11235at 180.776 kb on - strand, within EX31_RS11235at 180.800 kb on + strand, within EX31_RS11235at 180.811 kb on + strand, within EX31_RS11235at 180.811 kb on + strand, within EX31_RS11235at 180.824 kb on + strand, within EX31_RS11235at 180.824 kb on + strand, within EX31_RS11235at 180.824 kb on + strand, within EX31_RS11235at 180.889 kb on + strand, within EX31_RS11235at 180.889 kb on + strand, within EX31_RS11235at 180.890 kb on - strand, within EX31_RS11235at 180.980 kb on + strand, within EX31_RS11235at 180.980 kb on + strand, within EX31_RS11235at 180.980 kb on + strand, within EX31_RS11235at 180.980 kb on + strand, within EX31_RS11235at 180.981 kb on - strand, within EX31_RS11235at 180.981 kb on - strand, within EX31_RS11235at 181.064 kb on + strand, within EX31_RS11235at 181.065 kb on - strand, within EX31_RS11235at 181.217 kb on + strandat 181.218 kb on - strandat 181.218 kb on - strandat 181.218 kb on - strandat 181.328 kb on - strandat 181.694 kb on + strand, within EX31_RS11240at 181.694 kb on + strand, within EX31_RS11240at 181.695 kb on - strand, within EX31_RS11240at 181.749 kb on - strand, within EX31_RS11240at 181.763 kb on + strand, within EX31_RS11240at 181.846 kb on - strandat 182.002 kb on - strand, within EX31_RS11245at 182.002 kb on - strand, within EX31_RS11245at 182.137 kb on - strand, within EX31_RS11245at 182.137 kb on - strand, within EX31_RS11245at 182.159 kb on + strand, within EX31_RS11245at 182.160 kb on - strand, within EX31_RS11245at 182.161 kb on + strand, within EX31_RS11245at 182.228 kb on + strand, within EX31_RS11245at 182.228 kb on + strand, within EX31_RS11245at 182.385 kb on + strand, within EX31_RS11245at 182.469 kb on + strand, within EX31_RS11245at 182.470 kb on - strand, within EX31_RS11245at 182.534 kb on + strand, within EX31_RS11245at 182.534 kb on + strand, within EX31_RS11245at 182.535 kb on - strand, within EX31_RS11245at 182.535 kb on - strand, within EX31_RS11245at 182.535 kb on - strand, within EX31_RS11245at 182.535 kb on - strand, within EX31_RS11245at 182.562 kb on - strand, within EX31_RS11245at 182.580 kb on - strand, within EX31_RS11245at 182.580 kb on - strand, within EX31_RS11245at 182.631 kb on - strand, within EX31_RS11245at 182.631 kb on - strand, within EX31_RS11245at 182.667 kb on - strand, within EX31_RS11245at 182.669 kb on + strand, within EX31_RS11245at 182.669 kb on + strand, within EX31_RS11245at 182.669 kb on + strand, within EX31_RS11245at 182.670 kb on - strandat 182.670 kb on - strandat 182.670 kb on - strandat 182.670 kb on - strandat 182.670 kb on - strandat 182.681 kb on + strandat 182.681 kb on + strandat 182.682 kb on - strandat 182.759 kb on + strandat 182.776 kb on + strandat 182.776 kb on + strandat 182.776 kb on + strandat 182.776 kb on + strandat 182.777 kb on - strandat 182.777 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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180,339 + -1.0
180,340 - +0.4
180,363 + -1.6
180,379 + -0.8
180,414 + -0.1
180,415 - -0.9
180,451 + +0.2
180,451 + -0.2
180,452 - +0.8
180,529 + EX31_RS11235 0.17 +0.9
180,529 + EX31_RS11235 0.17 -0.0
180,530 - EX31_RS11235 0.17 +0.2
180,599 + EX31_RS11235 0.25 -0.7
180,614 - EX31_RS11235 0.26 +0.3
180,666 + EX31_RS11235 0.32 +0.4
180,749 + EX31_RS11235 0.41 +0.9
180,750 - EX31_RS11235 0.41 -0.3
180,758 - EX31_RS11235 0.42 -0.0
180,775 + EX31_RS11235 0.44 -0.5
180,776 - EX31_RS11235 0.44 -0.1
180,776 - EX31_RS11235 0.44 -1.3
180,800 + EX31_RS11235 0.46 +0.4
180,811 + EX31_RS11235 0.47 +0.4
180,811 + EX31_RS11235 0.47 -0.0
180,824 + EX31_RS11235 0.49 +0.2
180,824 + EX31_RS11235 0.49 +0.3
180,824 + EX31_RS11235 0.49 +0.3
180,889 + EX31_RS11235 0.56 -0.0
180,889 + EX31_RS11235 0.56 -0.8
180,890 - EX31_RS11235 0.56 -1.2
180,980 + EX31_RS11235 0.66 +0.3
180,980 + EX31_RS11235 0.66 -0.7
180,980 + EX31_RS11235 0.66 +0.3
180,980 + EX31_RS11235 0.66 +0.6
180,981 - EX31_RS11235 0.66 +0.9
180,981 - EX31_RS11235 0.66 +0.6
181,064 + EX31_RS11235 0.75 +1.4
181,065 - EX31_RS11235 0.75 +0.0
181,217 + +0.0
181,218 - -1.5
181,218 - -0.5
181,218 - -3.0
181,328 - -0.3
181,694 + EX31_RS11240 0.73 +1.5
181,694 + EX31_RS11240 0.73 +0.1
181,695 - EX31_RS11240 0.73 +0.8
181,749 - EX31_RS11240 0.84 +0.4
181,763 + EX31_RS11240 0.87 -0.7
181,846 - -0.2
182,002 - EX31_RS11245 0.17 +1.1
182,002 - EX31_RS11245 0.17 -0.9
182,137 - EX31_RS11245 0.32 -0.9
182,137 - EX31_RS11245 0.32 +0.8
182,159 + EX31_RS11245 0.34 -0.9
182,160 - EX31_RS11245 0.34 +0.7
182,161 + EX31_RS11245 0.34 -0.9
182,228 + EX31_RS11245 0.42 +1.2
182,228 + EX31_RS11245 0.42 +1.2
182,385 + EX31_RS11245 0.59 -0.4
182,469 + EX31_RS11245 0.68 -1.5
182,470 - EX31_RS11245 0.68 -0.8
182,534 + EX31_RS11245 0.75 -1.6
182,534 + EX31_RS11245 0.75 -2.6
182,535 - EX31_RS11245 0.75 -1.3
182,535 - EX31_RS11245 0.75 +1.4
182,535 - EX31_RS11245 0.75 -1.0
182,535 - EX31_RS11245 0.75 -0.6
182,562 - EX31_RS11245 0.78 +1.4
182,580 - EX31_RS11245 0.80 -0.5
182,580 - EX31_RS11245 0.80 -0.7
182,631 - EX31_RS11245 0.86 -0.3
182,631 - EX31_RS11245 0.86 +0.4
182,667 - EX31_RS11245 0.90 +0.2
182,669 + EX31_RS11245 0.90 +0.4
182,669 + EX31_RS11245 0.90 +0.4
182,669 + EX31_RS11245 0.90 +0.9
182,670 - +0.3
182,670 - -1.6
182,670 - +0.1
182,670 - -0.3
182,670 - -2.7
182,681 + -0.4
182,681 + -1.1
182,682 - -0.6
182,759 + -0.6
182,776 + +0.7
182,776 + +0.8
182,776 + +0.7
182,776 + +0.5
182,777 - -0.2
182,777 - -0.5

Or see this region's nucleotide sequence