Strain Fitness in Rahnella sp. WP5 around EX31_RS10110

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS10105 and EX31_RS10110 are separated by 148 nucleotidesEX31_RS10110 and EX31_RS10115 are separated by 43 nucleotides EX31_RS10105: EX31_RS10105 - patatin-like phospholipase RssA, at 231,494 to 232,405 _RS10105 EX31_RS10110: EX31_RS10110 - YchJ family protein, at 232,554 to 233,018 _RS10110 EX31_RS10115: EX31_RS10115 - formyltetrahydrofolate deformylase, at 233,062 to 233,910 _RS10115 Position (kb) 232 233 234Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 231.701 kb on - strand, within EX31_RS10105at 231.701 kb on - strand, within EX31_RS10105at 231.765 kb on - strand, within EX31_RS10105at 231.821 kb on + strand, within EX31_RS10105at 231.952 kb on - strand, within EX31_RS10105at 231.952 kb on - strand, within EX31_RS10105at 231.952 kb on - strand, within EX31_RS10105at 232.204 kb on - strand, within EX31_RS10105at 232.229 kb on + strand, within EX31_RS10105at 232.230 kb on - strand, within EX31_RS10105at 232.416 kb on + strandat 232.416 kb on + strandat 232.416 kb on + strandat 232.416 kb on + strandat 232.416 kb on + strandat 232.416 kb on + strandat 232.416 kb on + strandat 232.416 kb on + strandat 232.416 kb on + strandat 232.416 kb on + strandat 232.417 kb on - strandat 232.417 kb on - strandat 232.417 kb on - strandat 232.417 kb on - strandat 232.417 kb on - strandat 232.417 kb on - strandat 232.417 kb on - strandat 232.417 kb on - strandat 232.417 kb on - strandat 232.417 kb on - strandat 232.417 kb on - strandat 232.417 kb on - strandat 232.418 kb on + strandat 232.419 kb on - strandat 232.419 kb on - strandat 232.419 kb on - strandat 232.427 kb on + strandat 232.427 kb on + strandat 232.427 kb on + strandat 232.428 kb on - strandat 232.433 kb on + strandat 232.434 kb on - strandat 232.475 kb on - strandat 232.478 kb on + strandat 232.478 kb on + strandat 232.479 kb on - strandat 232.479 kb on - strandat 232.479 kb on - strandat 232.483 kb on + strandat 232.484 kb on - strandat 232.529 kb on + strandat 232.611 kb on + strand, within EX31_RS10110at 232.611 kb on + strand, within EX31_RS10110at 232.611 kb on + strand, within EX31_RS10110at 232.611 kb on + strand, within EX31_RS10110at 232.611 kb on + strand, within EX31_RS10110at 232.612 kb on - strand, within EX31_RS10110at 232.612 kb on - strand, within EX31_RS10110at 232.626 kb on - strand, within EX31_RS10110at 232.665 kb on + strand, within EX31_RS10110at 232.674 kb on + strand, within EX31_RS10110at 232.674 kb on + strand, within EX31_RS10110at 232.674 kb on + strand, within EX31_RS10110at 232.695 kb on + strand, within EX31_RS10110at 232.696 kb on - strand, within EX31_RS10110at 232.751 kb on - strand, within EX31_RS10110at 232.786 kb on + strand, within EX31_RS10110at 232.786 kb on + strand, within EX31_RS10110at 232.874 kb on + strand, within EX31_RS10110at 232.874 kb on + strand, within EX31_RS10110at 232.874 kb on + strand, within EX31_RS10110at 232.874 kb on + strand, within EX31_RS10110at 232.875 kb on - strand, within EX31_RS10110at 232.875 kb on - strand, within EX31_RS10110at 232.926 kb on + strand, within EX31_RS10110at 232.929 kb on + strand, within EX31_RS10110at 232.929 kb on + strand, within EX31_RS10110at 232.929 kb on + strand, within EX31_RS10110at 232.929 kb on + strand, within EX31_RS10110at 232.930 kb on - strand, within EX31_RS10110at 232.930 kb on - strand, within EX31_RS10110at 232.930 kb on - strand, within EX31_RS10110at 232.930 kb on - strand, within EX31_RS10110at 232.931 kb on + strand, within EX31_RS10110at 232.931 kb on + strand, within EX31_RS10110at 232.943 kb on + strand, within EX31_RS10110at 232.997 kb on + strandat 232.998 kb on - strandat 232.998 kb on - strandat 233.016 kb on + strandat 233.016 kb on + strandat 233.017 kb on - strandat 233.027 kb on + strandat 233.027 kb on + strandat 233.078 kb on + strandat 233.090 kb on + strandat 233.094 kb on - strandat 233.142 kb on + strandat 233.163 kb on + strand, within EX31_RS10115at 233.163 kb on + strand, within EX31_RS10115at 233.163 kb on + strand, within EX31_RS10115at 233.163 kb on + strand, within EX31_RS10115at 233.164 kb on - strand, within EX31_RS10115at 233.164 kb on - strand, within EX31_RS10115at 233.166 kb on + strand, within EX31_RS10115at 233.214 kb on + strand, within EX31_RS10115at 233.463 kb on + strand, within EX31_RS10115at 233.554 kb on + strand, within EX31_RS10115at 233.554 kb on + strand, within EX31_RS10115at 233.554 kb on + strand, within EX31_RS10115at 233.554 kb on + strand, within EX31_RS10115at 233.554 kb on + strand, within EX31_RS10115at 233.554 kb on + strand, within EX31_RS10115at 233.572 kb on + strand, within EX31_RS10115at 233.572 kb on + strand, within EX31_RS10115at 233.572 kb on + strand, within EX31_RS10115at 233.573 kb on - strand, within EX31_RS10115at 233.573 kb on - strand, within EX31_RS10115at 233.582 kb on + strand, within EX31_RS10115at 233.609 kb on - strand, within EX31_RS10115at 233.656 kb on - strand, within EX31_RS10115at 233.683 kb on + strand, within EX31_RS10115at 233.723 kb on - strand, within EX31_RS10115at 233.784 kb on + strand, within EX31_RS10115at 233.784 kb on + strand, within EX31_RS10115at 233.784 kb on + strand, within EX31_RS10115at 233.784 kb on + strand, within EX31_RS10115at 233.784 kb on + strand, within EX31_RS10115at 233.784 kb on + strand, within EX31_RS10115at 233.784 kb on + strand, within EX31_RS10115at 233.784 kb on + strand, within EX31_RS10115at 233.784 kb on + strand, within EX31_RS10115at 233.785 kb on - strand, within EX31_RS10115at 233.785 kb on - strand, within EX31_RS10115at 233.785 kb on - strand, within EX31_RS10115at 233.788 kb on + strand, within EX31_RS10115at 233.788 kb on + strand, within EX31_RS10115at 233.788 kb on + strand, within EX31_RS10115at 233.788 kb on + strand, within EX31_RS10115at 233.789 kb on - strand, within EX31_RS10115at 233.789 kb on - strand, within EX31_RS10115at 233.789 kb on - strand, within EX31_RS10115at 233.789 kb on - strand, within EX31_RS10115at 233.789 kb on - strand, within EX31_RS10115at 233.790 kb on + strand, within EX31_RS10115at 233.790 kb on + strand, within EX31_RS10115at 233.790 kb on + strand, within EX31_RS10115at 233.791 kb on - strand, within EX31_RS10115at 233.791 kb on - strand, within EX31_RS10115at 233.802 kb on + strand, within EX31_RS10115at 233.802 kb on + strand, within EX31_RS10115at 233.802 kb on + strand, within EX31_RS10115at 233.802 kb on + strand, within EX31_RS10115at 233.802 kb on + strand, within EX31_RS10115at 233.802 kb on + strand, within EX31_RS10115at 233.802 kb on + strand, within EX31_RS10115at 233.852 kb on + strandat 233.853 kb on - strandat 233.853 kb on - strandat 233.853 kb on - strandat 233.854 kb on + strandat 233.854 kb on + strandat 233.854 kb on + strandat 233.884 kb on + strandat 233.908 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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231,701 - EX31_RS10105 0.23 +0.2
231,701 - EX31_RS10105 0.23 +0.4
231,765 - EX31_RS10105 0.30 +0.6
231,821 + EX31_RS10105 0.36 -0.0
231,952 - EX31_RS10105 0.50 -3.0
231,952 - EX31_RS10105 0.50 -0.7
231,952 - EX31_RS10105 0.50 +0.5
232,204 - EX31_RS10105 0.78 -0.6
232,229 + EX31_RS10105 0.81 +0.0
232,230 - EX31_RS10105 0.81 +1.5
232,416 + +0.4
232,416 + -0.8
232,416 + +0.6
232,416 + +0.8
232,416 + +1.5
232,416 + -0.0
232,416 + +0.4
232,416 + -0.4
232,416 + +0.9
232,416 + +1.4
232,417 - -0.2
232,417 - +0.4
232,417 - +1.0
232,417 - -0.2
232,417 - +0.0
232,417 - -1.6
232,417 - -0.8
232,417 - +0.5
232,417 - -1.6
232,417 - +0.5
232,417 - -0.0
232,417 - +0.5
232,418 + -1.2
232,419 - +0.8
232,419 - +0.8
232,419 - +1.2
232,427 + -0.9
232,427 + +2.1
232,427 + -0.1
232,428 - +1.0
232,433 + -1.7
232,434 - +1.3
232,475 - +0.9
232,478 + +0.8
232,478 + -0.3
232,479 - +0.8
232,479 - +0.6
232,479 - -0.6
232,483 + +0.2
232,484 - +0.6
232,529 + -0.1
232,611 + EX31_RS10110 0.12 -2.9
232,611 + EX31_RS10110 0.12 -0.4
232,611 + EX31_RS10110 0.12 +0.4
232,611 + EX31_RS10110 0.12 -0.2
232,611 + EX31_RS10110 0.12 +0.5
232,612 - EX31_RS10110 0.12 +0.5
232,612 - EX31_RS10110 0.12 -0.1
232,626 - EX31_RS10110 0.15 +0.6
232,665 + EX31_RS10110 0.24 -0.5
232,674 + EX31_RS10110 0.26 -0.2
232,674 + EX31_RS10110 0.26 -0.4
232,674 + EX31_RS10110 0.26 +0.2
232,695 + EX31_RS10110 0.30 +0.3
232,696 - EX31_RS10110 0.31 +0.1
232,751 - EX31_RS10110 0.42 +0.7
232,786 + EX31_RS10110 0.50 -2.0
232,786 + EX31_RS10110 0.50 -0.2
232,874 + EX31_RS10110 0.69 -0.6
232,874 + EX31_RS10110 0.69 +0.9
232,874 + EX31_RS10110 0.69 +0.8
232,874 + EX31_RS10110 0.69 -2.1
232,875 - EX31_RS10110 0.69 -3.0
232,875 - EX31_RS10110 0.69 -0.9
232,926 + EX31_RS10110 0.80 -0.3
232,929 + EX31_RS10110 0.81 -0.6
232,929 + EX31_RS10110 0.81 +2.1
232,929 + EX31_RS10110 0.81 +0.1
232,929 + EX31_RS10110 0.81 -1.2
232,930 - EX31_RS10110 0.81 -0.7
232,930 - EX31_RS10110 0.81 +0.9
232,930 - EX31_RS10110 0.81 +1.2
232,930 - EX31_RS10110 0.81 -0.2
232,931 + EX31_RS10110 0.81 +0.4
232,931 + EX31_RS10110 0.81 -0.6
232,943 + EX31_RS10110 0.84 -0.2
232,997 + -1.0
232,998 - -3.1
232,998 - -1.4
233,016 + +0.5
233,016 + -0.8
233,017 - +0.2
233,027 + +1.2
233,027 + +0.9
233,078 + -0.1
233,090 + +0.6
233,094 - +0.4
233,142 + -0.6
233,163 + EX31_RS10115 0.12 -2.5
233,163 + EX31_RS10115 0.12 -0.1
233,163 + EX31_RS10115 0.12 +1.3
233,163 + EX31_RS10115 0.12 +0.8
233,164 - EX31_RS10115 0.12 +0.2
233,164 - EX31_RS10115 0.12 +1.5
233,166 + EX31_RS10115 0.12 -0.1
233,214 + EX31_RS10115 0.18 -0.1
233,463 + EX31_RS10115 0.47 -0.4
233,554 + EX31_RS10115 0.58 +0.0
233,554 + EX31_RS10115 0.58 -0.2
233,554 + EX31_RS10115 0.58 +0.3
233,554 + EX31_RS10115 0.58 -0.2
233,554 + EX31_RS10115 0.58 -1.0
233,554 + EX31_RS10115 0.58 +0.3
233,572 + EX31_RS10115 0.60 -2.0
233,572 + EX31_RS10115 0.60 +0.6
233,572 + EX31_RS10115 0.60 -0.1
233,573 - EX31_RS10115 0.60 -0.8
233,573 - EX31_RS10115 0.60 -1.4
233,582 + EX31_RS10115 0.61 -0.4
233,609 - EX31_RS10115 0.64 +0.2
233,656 - EX31_RS10115 0.70 -0.2
233,683 + EX31_RS10115 0.73 +0.8
233,723 - EX31_RS10115 0.78 +0.1
233,784 + EX31_RS10115 0.85 +1.4
233,784 + EX31_RS10115 0.85 -0.5
233,784 + EX31_RS10115 0.85 +0.4
233,784 + EX31_RS10115 0.85 -1.2
233,784 + EX31_RS10115 0.85 -0.6
233,784 + EX31_RS10115 0.85 +0.7
233,784 + EX31_RS10115 0.85 +0.2
233,784 + EX31_RS10115 0.85 -0.2
233,784 + EX31_RS10115 0.85 -0.4
233,785 - EX31_RS10115 0.85 -2.7
233,785 - EX31_RS10115 0.85 +0.7
233,785 - EX31_RS10115 0.85 +0.5
233,788 + EX31_RS10115 0.86 +0.8
233,788 + EX31_RS10115 0.86 -0.2
233,788 + EX31_RS10115 0.86 -0.3
233,788 + EX31_RS10115 0.86 -0.1
233,789 - EX31_RS10115 0.86 -1.7
233,789 - EX31_RS10115 0.86 -0.2
233,789 - EX31_RS10115 0.86 +1.3
233,789 - EX31_RS10115 0.86 +1.0
233,789 - EX31_RS10115 0.86 -0.5
233,790 + EX31_RS10115 0.86 +0.5
233,790 + EX31_RS10115 0.86 +0.3
233,790 + EX31_RS10115 0.86 -1.1
233,791 - EX31_RS10115 0.86 +0.4
233,791 - EX31_RS10115 0.86 -1.6
233,802 + EX31_RS10115 0.87 -0.4
233,802 + EX31_RS10115 0.87 +0.7
233,802 + EX31_RS10115 0.87 -0.4
233,802 + EX31_RS10115 0.87 +0.2
233,802 + EX31_RS10115 0.87 -1.7
233,802 + EX31_RS10115 0.87 -1.4
233,802 + EX31_RS10115 0.87 +1.3
233,852 + -0.8
233,853 - -0.9
233,853 - -0.2
233,853 - -1.8
233,854 + +0.8
233,854 + +0.2
233,854 + -0.4
233,884 + -0.3
233,908 + +0.5

Or see this region's nucleotide sequence