Experiment: MGL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS09380 and EX31_RS09385 are separated by 471 nucleotides EX31_RS09385 and EX31_RS09390 are separated by 117 nucleotides EX31_RS09390 and EX31_RS25290 are separated by 63 nucleotides
EX31_RS09380: EX31_RS09380 - putative cation transport regulator ChaB, at 80,236 to 80,469
_RS09380
EX31_RS09385: EX31_RS09385 - sodium-potassium/proton antiporter ChaA, at 80,941 to 82,041
_RS09385
EX31_RS09390: EX31_RS09390 - phosphate starvation-inducible protein PhoH, at 82,159 to 82,947
_RS09390
EX31_RS25290: EX31_RS25290 - hypothetical protein, at 83,011 to 83,424
_RS25290
Position (kb) 80
81
82
83 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 79.965 kb on + strand at 79.966 kb on - strand at 79.966 kb on - strand at 80.018 kb on - strand at 80.018 kb on - strand at 80.033 kb on - strand at 80.035 kb on - strand at 80.035 kb on - strand at 80.055 kb on + strand at 80.144 kb on - strand at 80.147 kb on + strand at 80.235 kb on - strand at 80.248 kb on - strand at 80.248 kb on - strand at 80.277 kb on + strand, within EX31_RS09380 at 80.278 kb on - strand, within EX31_RS09380 at 80.310 kb on + strand, within EX31_RS09380 at 80.311 kb on - strand, within EX31_RS09380 at 80.311 kb on - strand, within EX31_RS09380 at 80.352 kb on + strand, within EX31_RS09380 at 80.364 kb on - strand, within EX31_RS09380 at 80.394 kb on + strand, within EX31_RS09380 at 80.395 kb on - strand, within EX31_RS09380 at 80.396 kb on + strand, within EX31_RS09380 at 80.396 kb on + strand, within EX31_RS09380 at 80.396 kb on + strand, within EX31_RS09380 at 80.397 kb on - strand, within EX31_RS09380 at 80.397 kb on - strand, within EX31_RS09380 at 80.397 kb on - strand, within EX31_RS09380 at 80.397 kb on - strand, within EX31_RS09380 at 80.397 kb on - strand, within EX31_RS09380 at 80.544 kb on - strand at 80.551 kb on - strand at 80.782 kb on - strand at 80.843 kb on - strand at 80.910 kb on + strand at 80.911 kb on - strand at 80.922 kb on + strand at 80.922 kb on + strand at 80.924 kb on + strand at 80.933 kb on + strand at 80.989 kb on + strand at 80.990 kb on - strand at 80.990 kb on - strand at 80.990 kb on - strand at 81.018 kb on + strand at 81.018 kb on + strand at 81.018 kb on + strand at 81.018 kb on + strand at 81.019 kb on - strand at 81.019 kb on - strand at 81.049 kb on - strand at 81.135 kb on - strand, within EX31_RS09385 at 81.135 kb on - strand, within EX31_RS09385 at 81.302 kb on + strand, within EX31_RS09385 at 81.346 kb on + strand, within EX31_RS09385 at 81.346 kb on + strand, within EX31_RS09385 at 81.346 kb on + strand, within EX31_RS09385 at 81.347 kb on - strand, within EX31_RS09385 at 81.347 kb on - strand, within EX31_RS09385 at 81.347 kb on - strand, within EX31_RS09385 at 81.347 kb on - strand, within EX31_RS09385 at 81.347 kb on - strand, within EX31_RS09385 at 81.373 kb on + strand, within EX31_RS09385 at 81.373 kb on + strand, within EX31_RS09385 at 81.373 kb on + strand, within EX31_RS09385 at 81.373 kb on + strand, within EX31_RS09385 at 81.373 kb on + strand, within EX31_RS09385 at 81.373 kb on + strand, within EX31_RS09385 at 81.452 kb on + strand, within EX31_RS09385 at 81.490 kb on + strand, within EX31_RS09385 at 81.490 kb on + strand, within EX31_RS09385 at 81.497 kb on + strand, within EX31_RS09385 at 81.497 kb on + strand, within EX31_RS09385 at 81.537 kb on + strand, within EX31_RS09385 at 81.541 kb on + strand, within EX31_RS09385 at 81.609 kb on + strand, within EX31_RS09385 at 81.609 kb on + strand, within EX31_RS09385 at 81.609 kb on + strand, within EX31_RS09385 at 81.972 kb on + strand at 81.980 kb on + strand at 81.983 kb on + strand at 81.983 kb on + strand at 82.018 kb on + strand at 82.018 kb on + strand at 82.028 kb on + strand at 82.029 kb on - strand at 82.029 kb on - strand at 82.029 kb on - strand at 82.032 kb on + strand at 82.033 kb on - strand at 82.161 kb on - strand at 82.167 kb on - strand at 82.298 kb on - strand, within EX31_RS09390 at 82.441 kb on - strand, within EX31_RS09390 at 82.443 kb on - strand, within EX31_RS09390 at 82.532 kb on + strand, within EX31_RS09390 at 82.721 kb on - strand, within EX31_RS09390 at 82.728 kb on + strand, within EX31_RS09390 at 82.728 kb on + strand, within EX31_RS09390 at 82.748 kb on + strand, within EX31_RS09390 at 82.749 kb on - strand, within EX31_RS09390 at 82.749 kb on - strand, within EX31_RS09390 at 82.749 kb on - strand, within EX31_RS09390 at 82.749 kb on - strand, within EX31_RS09390 at 82.838 kb on - strand, within EX31_RS09390 at 82.841 kb on - strand, within EX31_RS09390 at 82.841 kb on - strand, within EX31_RS09390 at 82.878 kb on + strand at 82.948 kb on - strand at 82.958 kb on + strand at 82.959 kb on - strand at 82.959 kb on - strand at 82.975 kb on - strand at 82.981 kb on - strand at 82.988 kb on - strand at 82.988 kb on - strand at 83.038 kb on + strand at 83.039 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MGL remove 79,965 + -0.4 79,966 - +0.5 79,966 - -1.6 80,018 - +0.3 80,018 - +0.1 80,033 - +0.1 80,035 - +0.3 80,035 - +1.4 80,055 + +0.3 80,144 - -0.8 80,147 + +0.8 80,235 - -0.8 80,248 - +0.2 80,248 - -0.5 80,277 + EX31_RS09380 0.18 -1.0 80,278 - EX31_RS09380 0.18 -0.4 80,310 + EX31_RS09380 0.32 +0.5 80,311 - EX31_RS09380 0.32 -0.9 80,311 - EX31_RS09380 0.32 -0.4 80,352 + EX31_RS09380 0.50 +1.1 80,364 - EX31_RS09380 0.55 +0.5 80,394 + EX31_RS09380 0.68 +0.1 80,395 - EX31_RS09380 0.68 +1.2 80,396 + EX31_RS09380 0.68 -0.3 80,396 + EX31_RS09380 0.68 +0.4 80,396 + EX31_RS09380 0.68 +0.3 80,397 - EX31_RS09380 0.69 +0.3 80,397 - EX31_RS09380 0.69 +0.7 80,397 - EX31_RS09380 0.69 +1.3 80,397 - EX31_RS09380 0.69 -3.0 80,397 - EX31_RS09380 0.69 -0.2 80,544 - -0.5 80,551 - -0.5 80,782 - -0.9 80,843 - -0.5 80,910 + +0.8 80,911 - -0.8 80,922 + -0.9 80,922 + +1.4 80,924 + +0.6 80,933 + +0.5 80,989 + -0.5 80,990 - -1.4 80,990 - +0.0 80,990 - -0.4 81,018 + +0.8 81,018 + -1.9 81,018 + -0.7 81,018 + -0.5 81,019 - -0.6 81,019 - +0.8 81,049 - -0.4 81,135 - EX31_RS09385 0.18 +1.2 81,135 - EX31_RS09385 0.18 -0.4 81,302 + EX31_RS09385 0.33 +2.3 81,346 + EX31_RS09385 0.37 -1.6 81,346 + EX31_RS09385 0.37 -1.6 81,346 + EX31_RS09385 0.37 +1.4 81,347 - EX31_RS09385 0.37 +0.9 81,347 - EX31_RS09385 0.37 -0.6 81,347 - EX31_RS09385 0.37 -0.7 81,347 - EX31_RS09385 0.37 +0.8 81,347 - EX31_RS09385 0.37 -1.4 81,373 + EX31_RS09385 0.39 -2.2 81,373 + EX31_RS09385 0.39 +0.5 81,373 + EX31_RS09385 0.39 +0.0 81,373 + EX31_RS09385 0.39 -1.6 81,373 + EX31_RS09385 0.39 +0.4 81,373 + EX31_RS09385 0.39 +1.8 81,452 + EX31_RS09385 0.46 +2.0 81,490 + EX31_RS09385 0.50 +0.5 81,490 + EX31_RS09385 0.50 +0.7 81,497 + EX31_RS09385 0.50 +0.2 81,497 + EX31_RS09385 0.50 +0.6 81,537 + EX31_RS09385 0.54 -2.0 81,541 + EX31_RS09385 0.54 +1.3 81,609 + EX31_RS09385 0.61 -0.1 81,609 + EX31_RS09385 0.61 +1.4 81,609 + EX31_RS09385 0.61 -1.0 81,972 + +1.3 81,980 + +0.0 81,983 + -1.1 81,983 + +0.6 82,018 + +1.0 82,018 + -0.4 82,028 + -1.0 82,029 - +0.2 82,029 - -1.2 82,029 - +0.5 82,032 + -1.3 82,033 - -1.0 82,161 - +0.5 82,167 - +0.2 82,298 - EX31_RS09390 0.18 +0.0 82,441 - EX31_RS09390 0.36 -0.1 82,443 - EX31_RS09390 0.36 -0.8 82,532 + EX31_RS09390 0.47 +2.9 82,721 - EX31_RS09390 0.71 +0.1 82,728 + EX31_RS09390 0.72 -0.8 82,728 + EX31_RS09390 0.72 -0.7 82,748 + EX31_RS09390 0.75 +1.6 82,749 - EX31_RS09390 0.75 -0.4 82,749 - EX31_RS09390 0.75 +0.2 82,749 - EX31_RS09390 0.75 +0.4 82,749 - EX31_RS09390 0.75 -1.0 82,838 - EX31_RS09390 0.86 -2.0 82,841 - EX31_RS09390 0.86 +0.4 82,841 - EX31_RS09390 0.86 -0.2 82,878 + -0.1 82,948 - +1.5 82,958 + +0.0 82,959 - +1.6 82,959 - -0.5 82,975 - +0.6 82,981 - +0.6 82,988 - -2.3 82,988 - -1.1 83,038 + +1.5 83,039 - -0.6
Or see this region's nucleotide sequence