Experiment: MGL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS01855 and EX31_RS01860 are separated by 11 nucleotides EX31_RS01860 and EX31_RS01865 overlap by 4 nucleotides EX31_RS01865 and EX31_RS01870 are separated by 3 nucleotides
EX31_RS01855: EX31_RS01855 - type VI secretion system contractile sheath large subunit, at 400,633 to 402,180
_RS01855
EX31_RS01860: EX31_RS01860 - type VI secretion system baseplate subunit TssK, at 402,192 to 403,529
_RS01860
EX31_RS01865: EX31_RS01865 - DotU family type IV/VI secretion system protein, at 403,526 to 404,179
_RS01865
EX31_RS01870: EX31_RS01870 - OmpA family protein, at 404,183 to 405,877
_RS01870
Position (kb) 402
403
404 Strain fitness (log2 ratio) -2
-1
0
1
2 at 401.241 kb on + strand, within EX31_RS01855 at 401.246 kb on + strand, within EX31_RS01855 at 401.263 kb on - strand, within EX31_RS01855 at 401.347 kb on + strand, within EX31_RS01855 at 401.347 kb on + strand, within EX31_RS01855 at 401.347 kb on + strand, within EX31_RS01855 at 401.348 kb on - strand, within EX31_RS01855 at 401.348 kb on - strand, within EX31_RS01855 at 401.366 kb on - strand, within EX31_RS01855 at 401.407 kb on + strand, within EX31_RS01855 at 401.485 kb on + strand, within EX31_RS01855 at 401.485 kb on + strand, within EX31_RS01855 at 401.522 kb on - strand, within EX31_RS01855 at 401.651 kb on - strand, within EX31_RS01855 at 401.651 kb on - strand, within EX31_RS01855 at 401.771 kb on - strand, within EX31_RS01855 at 401.771 kb on - strand, within EX31_RS01855 at 401.820 kb on + strand, within EX31_RS01855 at 401.866 kb on + strand, within EX31_RS01855 at 401.867 kb on - strand, within EX31_RS01855 at 401.897 kb on - strand, within EX31_RS01855 at 402.129 kb on + strand at 402.165 kb on + strand at 402.165 kb on + strand at 402.172 kb on - strand at 402.297 kb on - strand at 402.454 kb on + strand, within EX31_RS01860 at 402.499 kb on + strand, within EX31_RS01860 at 402.499 kb on + strand, within EX31_RS01860 at 402.499 kb on + strand, within EX31_RS01860 at 402.499 kb on + strand, within EX31_RS01860 at 402.499 kb on + strand, within EX31_RS01860 at 402.694 kb on + strand, within EX31_RS01860 at 402.694 kb on + strand, within EX31_RS01860 at 402.694 kb on + strand, within EX31_RS01860 at 402.694 kb on + strand, within EX31_RS01860 at 402.695 kb on - strand, within EX31_RS01860 at 402.695 kb on - strand, within EX31_RS01860 at 402.695 kb on - strand, within EX31_RS01860 at 402.695 kb on - strand, within EX31_RS01860 at 402.695 kb on - strand, within EX31_RS01860 at 402.802 kb on + strand, within EX31_RS01860 at 402.892 kb on + strand, within EX31_RS01860 at 402.892 kb on + strand, within EX31_RS01860 at 402.892 kb on + strand, within EX31_RS01860 at 402.892 kb on + strand, within EX31_RS01860 at 402.893 kb on - strand, within EX31_RS01860 at 402.893 kb on - strand, within EX31_RS01860 at 402.893 kb on - strand, within EX31_RS01860 at 402.984 kb on + strand, within EX31_RS01860 at 403.037 kb on + strand, within EX31_RS01860 at 403.038 kb on - strand, within EX31_RS01860 at 403.059 kb on + strand, within EX31_RS01860 at 403.068 kb on - strand, within EX31_RS01860 at 403.068 kb on - strand, within EX31_RS01860 at 403.143 kb on - strand, within EX31_RS01860 at 403.143 kb on - strand, within EX31_RS01860 at 403.143 kb on - strand, within EX31_RS01860 at 403.370 kb on - strand, within EX31_RS01860 at 403.471 kb on - strand at 403.471 kb on - strand at 403.507 kb on + strand at 403.507 kb on + strand at 403.507 kb on + strand at 403.507 kb on + strand at 403.699 kb on + strand, within EX31_RS01865 at 403.700 kb on - strand, within EX31_RS01865 at 403.700 kb on - strand, within EX31_RS01865 at 403.719 kb on - strand, within EX31_RS01865 at 403.721 kb on - strand, within EX31_RS01865 at 403.721 kb on - strand, within EX31_RS01865 at 403.735 kb on - strand, within EX31_RS01865 at 403.737 kb on + strand, within EX31_RS01865 at 403.737 kb on + strand, within EX31_RS01865 at 403.749 kb on + strand, within EX31_RS01865 at 403.750 kb on - strand, within EX31_RS01865 at 403.753 kb on + strand, within EX31_RS01865 at 403.754 kb on - strand, within EX31_RS01865 at 403.814 kb on + strand, within EX31_RS01865 at 403.856 kb on - strand, within EX31_RS01865 at 403.910 kb on + strand, within EX31_RS01865 at 403.989 kb on + strand, within EX31_RS01865 at 403.990 kb on - strand, within EX31_RS01865 at 404.130 kb on + strand at 404.130 kb on + strand at 404.135 kb on - strand at 404.135 kb on - strand at 404.149 kb on + strand at 404.149 kb on + strand at 404.149 kb on + strand at 404.149 kb on + strand at 404.149 kb on + strand at 404.149 kb on + strand at 404.149 kb on + strand at 404.149 kb on + strand at 404.149 kb on + strand at 404.149 kb on + strand at 404.150 kb on - strand at 404.150 kb on - strand at 404.150 kb on - strand at 404.150 kb on - strand at 404.194 kb on - strand at 404.202 kb on + strand at 404.203 kb on - strand at 404.203 kb on - strand at 404.205 kb on + strand at 404.318 kb on - strand at 404.339 kb on - strand at 404.363 kb on + strand, within EX31_RS01870 at 404.364 kb on - strand, within EX31_RS01870 at 404.371 kb on + strand, within EX31_RS01870 at 404.372 kb on - strand, within EX31_RS01870 at 404.372 kb on - strand, within EX31_RS01870 at 404.489 kb on + strand, within EX31_RS01870
Per-strain Table
Position Strand Gene LocusTag Fraction MGL remove 401,241 + EX31_RS01855 0.39 +1.0 401,246 + EX31_RS01855 0.40 +0.8 401,263 - EX31_RS01855 0.41 +0.2 401,347 + EX31_RS01855 0.46 +0.8 401,347 + EX31_RS01855 0.46 +0.7 401,347 + EX31_RS01855 0.46 -1.7 401,348 - EX31_RS01855 0.46 -0.2 401,348 - EX31_RS01855 0.46 -0.2 401,366 - EX31_RS01855 0.47 +0.4 401,407 + EX31_RS01855 0.50 -0.5 401,485 + EX31_RS01855 0.55 +0.2 401,485 + EX31_RS01855 0.55 -2.1 401,522 - EX31_RS01855 0.57 +0.1 401,651 - EX31_RS01855 0.66 +0.3 401,651 - EX31_RS01855 0.66 -0.0 401,771 - EX31_RS01855 0.74 +0.2 401,771 - EX31_RS01855 0.74 -0.0 401,820 + EX31_RS01855 0.77 +0.6 401,866 + EX31_RS01855 0.80 -0.4 401,867 - EX31_RS01855 0.80 +0.5 401,897 - EX31_RS01855 0.82 +0.5 402,129 + +0.6 402,165 + -0.1 402,165 + +0.6 402,172 - +0.0 402,297 - +0.2 402,454 + EX31_RS01860 0.20 +1.2 402,499 + EX31_RS01860 0.23 +0.1 402,499 + EX31_RS01860 0.23 -0.0 402,499 + EX31_RS01860 0.23 +1.1 402,499 + EX31_RS01860 0.23 +1.1 402,499 + EX31_RS01860 0.23 -0.1 402,694 + EX31_RS01860 0.38 -1.3 402,694 + EX31_RS01860 0.38 -2.0 402,694 + EX31_RS01860 0.38 +0.2 402,694 + EX31_RS01860 0.38 +0.3 402,695 - EX31_RS01860 0.38 +0.6 402,695 - EX31_RS01860 0.38 +0.7 402,695 - EX31_RS01860 0.38 +0.5 402,695 - EX31_RS01860 0.38 +0.0 402,695 - EX31_RS01860 0.38 -1.3 402,802 + EX31_RS01860 0.46 +1.2 402,892 + EX31_RS01860 0.52 +1.0 402,892 + EX31_RS01860 0.52 +0.5 402,892 + EX31_RS01860 0.52 +0.7 402,892 + EX31_RS01860 0.52 +0.8 402,893 - EX31_RS01860 0.52 -2.6 402,893 - EX31_RS01860 0.52 +0.7 402,893 - EX31_RS01860 0.52 +0.4 402,984 + EX31_RS01860 0.59 -2.5 403,037 + EX31_RS01860 0.63 +2.0 403,038 - EX31_RS01860 0.63 -0.2 403,059 + EX31_RS01860 0.65 +0.3 403,068 - EX31_RS01860 0.65 +0.3 403,068 - EX31_RS01860 0.65 +0.6 403,143 - EX31_RS01860 0.71 -1.2 403,143 - EX31_RS01860 0.71 +0.1 403,143 - EX31_RS01860 0.71 +0.2 403,370 - EX31_RS01860 0.88 +1.4 403,471 - -0.0 403,471 - -1.0 403,507 + -0.4 403,507 + -0.9 403,507 + +0.6 403,507 + -0.3 403,699 + EX31_RS01865 0.26 +1.4 403,700 - EX31_RS01865 0.27 +0.5 403,700 - EX31_RS01865 0.27 -0.5 403,719 - EX31_RS01865 0.30 -1.4 403,721 - EX31_RS01865 0.30 -0.2 403,721 - EX31_RS01865 0.30 +0.7 403,735 - EX31_RS01865 0.32 +0.3 403,737 + EX31_RS01865 0.32 -0.1 403,737 + EX31_RS01865 0.32 -0.5 403,749 + EX31_RS01865 0.34 +0.9 403,750 - EX31_RS01865 0.34 -0.2 403,753 + EX31_RS01865 0.35 +0.2 403,754 - EX31_RS01865 0.35 +0.1 403,814 + EX31_RS01865 0.44 -1.2 403,856 - EX31_RS01865 0.50 +0.9 403,910 + EX31_RS01865 0.59 -1.5 403,989 + EX31_RS01865 0.71 +0.1 403,990 - EX31_RS01865 0.71 +1.2 404,130 + +1.1 404,130 + -0.6 404,135 - +0.8 404,135 - +0.9 404,149 + +0.6 404,149 + +1.1 404,149 + -0.1 404,149 + +0.9 404,149 + +0.8 404,149 + +0.6 404,149 + -1.2 404,149 + -1.3 404,149 + +0.2 404,149 + -0.4 404,150 - +0.8 404,150 - +0.4 404,150 - +1.0 404,150 - +0.8 404,194 - +1.7 404,202 + -0.4 404,203 - -2.2 404,203 - +0.7 404,205 + +0.1 404,318 - -0.6 404,339 - +1.0 404,363 + EX31_RS01870 0.11 +0.5 404,364 - EX31_RS01870 0.11 -1.9 404,371 + EX31_RS01870 0.11 +0.1 404,372 - EX31_RS01870 0.11 -0.5 404,372 - EX31_RS01870 0.11 +1.0 404,489 + EX31_RS01870 0.18 -0.3
Or see this region's nucleotide sequence