Strain Fitness in Rahnella sp. WP5 around EX31_RS02125

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS02120 and EX31_RS02125 are separated by 47 nucleotidesEX31_RS02125 and EX31_RS02130 overlap by 4 nucleotidesEX31_RS02130 and EX31_RS02135 overlap by 8 nucleotidesEX31_RS02135 and EX31_RS02140 are separated by 264 nucleotides EX31_RS02120: EX31_RS02120 - MFS transporter, at 464,091 to 465,296 _RS02120 EX31_RS02125: EX31_RS02125 - helix-turn-helix transcriptional regulator, at 465,344 to 466,054 _RS02125 EX31_RS02130: EX31_RS02130 - amino acid-binding protein, at 466,051 to 466,443 _RS02130 EX31_RS02135: EX31_RS02135 - antibiotic biosynthesis monooxygenase, at 466,436 to 466,771 _RS02135 EX31_RS02140: EX31_RS02140 - DUF1852 domain-containing protein, at 467,036 to 468,019 _RS02140 Position (kb) 465 466 467Strain fitness (log2 ratio) -2 -1 0 1at 464.404 kb on + strand, within EX31_RS02120at 464.404 kb on + strand, within EX31_RS02120at 464.600 kb on - strand, within EX31_RS02120at 464.600 kb on - strand, within EX31_RS02120at 464.641 kb on + strand, within EX31_RS02120at 464.641 kb on + strand, within EX31_RS02120at 464.641 kb on + strand, within EX31_RS02120at 464.641 kb on + strand, within EX31_RS02120at 464.717 kb on + strand, within EX31_RS02120at 464.835 kb on + strand, within EX31_RS02120at 464.835 kb on + strand, within EX31_RS02120at 464.835 kb on + strand, within EX31_RS02120at 464.836 kb on - strand, within EX31_RS02120at 464.836 kb on - strand, within EX31_RS02120at 464.856 kb on - strand, within EX31_RS02120at 464.856 kb on - strand, within EX31_RS02120at 464.856 kb on - strand, within EX31_RS02120at 464.933 kb on + strand, within EX31_RS02120at 464.933 kb on + strand, within EX31_RS02120at 464.996 kb on - strand, within EX31_RS02120at 465.016 kb on + strand, within EX31_RS02120at 465.016 kb on + strand, within EX31_RS02120at 465.016 kb on + strand, within EX31_RS02120at 465.016 kb on + strand, within EX31_RS02120at 465.016 kb on + strand, within EX31_RS02120at 465.016 kb on + strand, within EX31_RS02120at 465.052 kb on + strand, within EX31_RS02120at 465.053 kb on - strand, within EX31_RS02120at 465.281 kb on + strandat 465.282 kb on - strandat 465.294 kb on + strandat 465.295 kb on - strandat 465.295 kb on - strandat 465.295 kb on - strandat 465.295 kb on - strandat 465.295 kb on - strandat 465.295 kb on - strandat 465.332 kb on + strandat 465.461 kb on + strand, within EX31_RS02125at 465.646 kb on - strand, within EX31_RS02125at 465.681 kb on + strand, within EX31_RS02125at 465.682 kb on - strand, within EX31_RS02125at 465.740 kb on - strand, within EX31_RS02125at 465.740 kb on - strand, within EX31_RS02125at 465.801 kb on + strand, within EX31_RS02125at 465.802 kb on - strand, within EX31_RS02125at 465.802 kb on - strand, within EX31_RS02125at 465.802 kb on - strand, within EX31_RS02125at 465.952 kb on + strand, within EX31_RS02125at 465.975 kb on - strand, within EX31_RS02125at 465.975 kb on - strand, within EX31_RS02125at 466.119 kb on + strand, within EX31_RS02130at 466.120 kb on - strand, within EX31_RS02130at 466.142 kb on + strand, within EX31_RS02130at 466.143 kb on - strand, within EX31_RS02130at 466.143 kb on - strand, within EX31_RS02130at 466.148 kb on - strand, within EX31_RS02130at 466.303 kb on + strand, within EX31_RS02130at 466.304 kb on - strand, within EX31_RS02130at 466.384 kb on - strand, within EX31_RS02130at 466.440 kb on - strandat 466.440 kb on - strandat 466.440 kb on - strandat 466.440 kb on - strandat 466.440 kb on - strandat 466.483 kb on - strand, within EX31_RS02135at 466.483 kb on - strand, within EX31_RS02135at 466.494 kb on - strand, within EX31_RS02135at 466.508 kb on + strand, within EX31_RS02135at 466.516 kb on - strand, within EX31_RS02135at 466.666 kb on + strand, within EX31_RS02135at 466.666 kb on + strand, within EX31_RS02135at 466.804 kb on - strandat 466.853 kb on - strandat 467.032 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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464,404 + EX31_RS02120 0.26 +0.7
464,404 + EX31_RS02120 0.26 -1.1
464,600 - EX31_RS02120 0.42 -0.1
464,600 - EX31_RS02120 0.42 -1.0
464,641 + EX31_RS02120 0.46 +0.0
464,641 + EX31_RS02120 0.46 +1.7
464,641 + EX31_RS02120 0.46 -1.5
464,641 + EX31_RS02120 0.46 +0.6
464,717 + EX31_RS02120 0.52 +0.2
464,835 + EX31_RS02120 0.62 +0.6
464,835 + EX31_RS02120 0.62 +0.0
464,835 + EX31_RS02120 0.62 +0.1
464,836 - EX31_RS02120 0.62 +0.1
464,836 - EX31_RS02120 0.62 -0.9
464,856 - EX31_RS02120 0.63 +0.4
464,856 - EX31_RS02120 0.63 -1.0
464,856 - EX31_RS02120 0.63 +0.7
464,933 + EX31_RS02120 0.70 -0.8
464,933 + EX31_RS02120 0.70 +0.1
464,996 - EX31_RS02120 0.75 -0.4
465,016 + EX31_RS02120 0.77 -0.2
465,016 + EX31_RS02120 0.77 -0.9
465,016 + EX31_RS02120 0.77 +0.1
465,016 + EX31_RS02120 0.77 +0.4
465,016 + EX31_RS02120 0.77 +1.7
465,016 + EX31_RS02120 0.77 -0.3
465,052 + EX31_RS02120 0.80 -0.6
465,053 - EX31_RS02120 0.80 +0.2
465,281 + -1.7
465,282 - +0.3
465,294 + -1.0
465,295 - -0.4
465,295 - -0.7
465,295 - +0.7
465,295 - -0.4
465,295 - +0.2
465,295 - -0.7
465,332 + -0.3
465,461 + EX31_RS02125 0.16 -1.2
465,646 - EX31_RS02125 0.42 -0.7
465,681 + EX31_RS02125 0.47 +0.3
465,682 - EX31_RS02125 0.48 +0.4
465,740 - EX31_RS02125 0.56 -1.1
465,740 - EX31_RS02125 0.56 -2.0
465,801 + EX31_RS02125 0.64 -0.4
465,802 - EX31_RS02125 0.64 +1.1
465,802 - EX31_RS02125 0.64 +0.8
465,802 - EX31_RS02125 0.64 +0.3
465,952 + EX31_RS02125 0.86 -1.2
465,975 - EX31_RS02125 0.89 +0.6
465,975 - EX31_RS02125 0.89 -0.6
466,119 + EX31_RS02130 0.17 -2.4
466,120 - EX31_RS02130 0.18 -2.6
466,142 + EX31_RS02130 0.23 -0.7
466,143 - EX31_RS02130 0.23 +0.7
466,143 - EX31_RS02130 0.23 -0.3
466,148 - EX31_RS02130 0.25 -2.4
466,303 + EX31_RS02130 0.64 -1.6
466,304 - EX31_RS02130 0.64 -1.7
466,384 - EX31_RS02130 0.85 -0.1
466,440 - -0.3
466,440 - +1.5
466,440 - -1.2
466,440 - -0.3
466,440 - -0.3
466,483 - EX31_RS02135 0.14 -1.5
466,483 - EX31_RS02135 0.14 -0.4
466,494 - EX31_RS02135 0.17 +0.4
466,508 + EX31_RS02135 0.21 -1.6
466,516 - EX31_RS02135 0.24 -1.6
466,666 + EX31_RS02135 0.68 -0.8
466,666 + EX31_RS02135 0.68 +0.6
466,804 - -1.8
466,853 - +0.1
467,032 + +0.5

Or see this region's nucleotide sequence