Strain Fitness in Rahnella sp. WP5 around EX31_RS25580

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS20475 and EX31_RS20480 are separated by 0 nucleotidesEX31_RS20480 and EX31_RS25580 overlap by 16 nucleotidesEX31_RS25580 and EX31_RS20485 are separated by 11 nucleotides EX31_RS20475: EX31_RS20475 - peptidase M4 family protein, at 731,807 to 732,841 _RS20475 EX31_RS20480: EX31_RS20480 - hypothetical protein, at 732,842 to 733,186 _RS20480 EX31_RS25580: EX31_RS25580 - primosomal protein N, at 733,171 to 733,401 _RS25580 EX31_RS20485: EX31_RS20485 - AEC family transporter, at 733,413 to 734,369 _RS20485 Position (kb) 733 734Strain fitness (log2 ratio) -2 -1 0 1 2at 732.186 kb on + strand, within EX31_RS20475at 732.187 kb on - strand, within EX31_RS20475at 732.187 kb on - strand, within EX31_RS20475at 732.344 kb on + strand, within EX31_RS20475at 732.344 kb on + strand, within EX31_RS20475at 732.344 kb on + strand, within EX31_RS20475at 732.344 kb on + strand, within EX31_RS20475at 732.344 kb on + strand, within EX31_RS20475at 732.345 kb on - strand, within EX31_RS20475at 732.345 kb on - strand, within EX31_RS20475at 732.346 kb on + strand, within EX31_RS20475at 732.346 kb on + strand, within EX31_RS20475at 732.346 kb on + strand, within EX31_RS20475at 732.449 kb on - strand, within EX31_RS20475at 732.499 kb on + strand, within EX31_RS20475at 732.499 kb on + strand, within EX31_RS20475at 732.499 kb on + strand, within EX31_RS20475at 732.499 kb on + strand, within EX31_RS20475at 732.499 kb on + strand, within EX31_RS20475at 732.499 kb on + strand, within EX31_RS20475at 732.499 kb on + strand, within EX31_RS20475at 732.499 kb on + strand, within EX31_RS20475at 732.499 kb on + strand, within EX31_RS20475at 732.499 kb on + strand, within EX31_RS20475at 732.499 kb on + strand, within EX31_RS20475at 732.499 kb on + strand, within EX31_RS20475at 732.499 kb on + strand, within EX31_RS20475at 732.499 kb on + strand, within EX31_RS20475at 732.499 kb on + strand, within EX31_RS20475at 732.499 kb on + strand, within EX31_RS20475at 732.500 kb on - strand, within EX31_RS20475at 732.500 kb on - strand, within EX31_RS20475at 732.500 kb on - strand, within EX31_RS20475at 732.500 kb on - strand, within EX31_RS20475at 732.500 kb on - strand, within EX31_RS20475at 732.500 kb on - strand, within EX31_RS20475at 732.521 kb on + strand, within EX31_RS20475at 732.521 kb on + strand, within EX31_RS20475at 732.572 kb on + strand, within EX31_RS20475at 732.573 kb on - strand, within EX31_RS20475at 732.610 kb on + strand, within EX31_RS20475at 732.610 kb on + strand, within EX31_RS20475at 732.611 kb on - strand, within EX31_RS20475at 732.611 kb on - strand, within EX31_RS20475at 732.621 kb on + strand, within EX31_RS20475at 732.621 kb on + strand, within EX31_RS20475at 732.621 kb on + strand, within EX31_RS20475at 732.621 kb on + strand, within EX31_RS20475at 732.621 kb on + strand, within EX31_RS20475at 732.621 kb on + strand, within EX31_RS20475at 732.622 kb on - strand, within EX31_RS20475at 732.622 kb on - strand, within EX31_RS20475at 732.625 kb on + strand, within EX31_RS20475at 732.625 kb on + strand, within EX31_RS20475at 732.625 kb on + strand, within EX31_RS20475at 732.639 kb on - strand, within EX31_RS20475at 732.686 kb on + strand, within EX31_RS20475at 732.686 kb on + strand, within EX31_RS20475at 732.686 kb on + strand, within EX31_RS20475at 732.686 kb on + strand, within EX31_RS20475at 732.687 kb on - strand, within EX31_RS20475at 732.696 kb on - strand, within EX31_RS20475at 732.696 kb on - strand, within EX31_RS20475at 732.696 kb on - strand, within EX31_RS20475at 732.839 kb on + strandat 732.839 kb on + strandat 732.839 kb on + strandat 732.839 kb on + strandat 732.840 kb on - strandat 732.840 kb on - strandat 732.853 kb on - strandat 732.868 kb on + strandat 732.868 kb on + strandat 732.868 kb on + strandat 732.953 kb on - strand, within EX31_RS20480at 732.964 kb on + strand, within EX31_RS20480at 733.007 kb on + strand, within EX31_RS20480at 733.007 kb on + strand, within EX31_RS20480at 733.007 kb on + strand, within EX31_RS20480at 733.007 kb on + strand, within EX31_RS20480at 733.050 kb on - strand, within EX31_RS20480at 733.050 kb on - strand, within EX31_RS20480at 733.067 kb on + strand, within EX31_RS20480at 733.067 kb on + strand, within EX31_RS20480at 733.067 kb on + strand, within EX31_RS20480at 733.067 kb on + strand, within EX31_RS20480at 733.067 kb on + strand, within EX31_RS20480at 733.067 kb on + strand, within EX31_RS20480at 733.068 kb on - strand, within EX31_RS20480at 733.068 kb on - strand, within EX31_RS20480at 733.068 kb on - strand, within EX31_RS20480at 733.068 kb on - strand, within EX31_RS20480at 733.068 kb on - strand, within EX31_RS20480at 733.070 kb on + strand, within EX31_RS20480at 733.071 kb on - strand, within EX31_RS20480at 733.071 kb on - strand, within EX31_RS20480at 733.108 kb on + strand, within EX31_RS20480at 733.109 kb on - strand, within EX31_RS20480at 733.184 kb on + strandat 733.193 kb on + strandat 733.194 kb on - strand, within EX31_RS25580at 733.194 kb on - strand, within EX31_RS25580at 733.198 kb on - strand, within EX31_RS25580at 733.198 kb on - strand, within EX31_RS25580at 733.198 kb on - strand, within EX31_RS25580at 733.247 kb on + strand, within EX31_RS25580at 733.248 kb on - strand, within EX31_RS25580at 733.248 kb on - strand, within EX31_RS25580at 733.248 kb on - strand, within EX31_RS25580at 733.248 kb on - strand, within EX31_RS25580at 733.253 kb on - strand, within EX31_RS25580at 733.358 kb on - strand, within EX31_RS25580at 733.406 kb on + strandat 733.406 kb on + strandat 733.414 kb on + strandat 733.415 kb on - strandat 733.418 kb on + strandat 733.418 kb on + strandat 733.419 kb on - strandat 733.419 kb on - strandat 733.419 kb on - strandat 733.437 kb on + strandat 733.437 kb on + strandat 733.437 kb on + strandat 733.438 kb on - strandat 733.438 kb on - strandat 733.442 kb on - strandat 733.442 kb on - strandat 733.442 kb on - strandat 733.442 kb on - strandat 733.490 kb on + strandat 733.490 kb on + strandat 733.491 kb on - strandat 733.491 kb on - strandat 733.493 kb on + strandat 733.494 kb on - strandat 733.541 kb on - strand, within EX31_RS20485at 733.541 kb on - strand, within EX31_RS20485at 733.541 kb on - strand, within EX31_RS20485at 733.578 kb on + strand, within EX31_RS20485at 733.578 kb on + strand, within EX31_RS20485at 733.578 kb on + strand, within EX31_RS20485at 733.578 kb on + strand, within EX31_RS20485at 733.579 kb on - strand, within EX31_RS20485at 733.579 kb on - strand, within EX31_RS20485at 733.579 kb on - strand, within EX31_RS20485at 733.579 kb on - strand, within EX31_RS20485at 733.579 kb on - strand, within EX31_RS20485at 733.647 kb on + strand, within EX31_RS20485at 733.647 kb on + strand, within EX31_RS20485at 733.728 kb on + strand, within EX31_RS20485at 733.728 kb on + strand, within EX31_RS20485at 733.728 kb on + strand, within EX31_RS20485at 733.728 kb on + strand, within EX31_RS20485at 733.728 kb on + strand, within EX31_RS20485at 733.728 kb on + strand, within EX31_RS20485at 733.728 kb on + strand, within EX31_RS20485at 733.729 kb on - strand, within EX31_RS20485at 733.729 kb on - strand, within EX31_RS20485at 733.798 kb on - strand, within EX31_RS20485at 733.798 kb on - strand, within EX31_RS20485at 733.807 kb on + strand, within EX31_RS20485at 733.808 kb on - strand, within EX31_RS20485at 733.808 kb on - strand, within EX31_RS20485at 733.812 kb on - strand, within EX31_RS20485at 733.889 kb on + strand, within EX31_RS20485at 733.890 kb on - strand, within EX31_RS20485at 733.925 kb on + strand, within EX31_RS20485at 733.969 kb on + strand, within EX31_RS20485at 733.969 kb on + strand, within EX31_RS20485at 733.970 kb on - strand, within EX31_RS20485at 733.989 kb on - strand, within EX31_RS20485at 734.017 kb on + strand, within EX31_RS20485at 734.100 kb on + strand, within EX31_RS20485at 734.101 kb on - strand, within EX31_RS20485at 734.153 kb on - strand, within EX31_RS20485at 734.153 kb on - strand, within EX31_RS20485at 734.153 kb on - strand, within EX31_RS20485at 734.153 kb on - strand, within EX31_RS20485at 734.153 kb on - strand, within EX31_RS20485at 734.239 kb on - strand, within EX31_RS20485at 734.262 kb on - strand, within EX31_RS20485at 734.319 kb on + strandat 734.320 kb on - strandat 734.395 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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732,186 + EX31_RS20475 0.37 -1.8
732,187 - EX31_RS20475 0.37 -0.0
732,187 - EX31_RS20475 0.37 +0.1
732,344 + EX31_RS20475 0.52 +0.8
732,344 + EX31_RS20475 0.52 -0.5
732,344 + EX31_RS20475 0.52 +0.4
732,344 + EX31_RS20475 0.52 +0.2
732,344 + EX31_RS20475 0.52 +1.4
732,345 - EX31_RS20475 0.52 +0.5
732,345 - EX31_RS20475 0.52 +1.3
732,346 + EX31_RS20475 0.52 +0.5
732,346 + EX31_RS20475 0.52 +0.8
732,346 + EX31_RS20475 0.52 -0.2
732,449 - EX31_RS20475 0.62 +0.1
732,499 + EX31_RS20475 0.67 -0.2
732,499 + EX31_RS20475 0.67 +0.2
732,499 + EX31_RS20475 0.67 -0.3
732,499 + EX31_RS20475 0.67 +0.1
732,499 + EX31_RS20475 0.67 +0.0
732,499 + EX31_RS20475 0.67 -0.8
732,499 + EX31_RS20475 0.67 -0.3
732,499 + EX31_RS20475 0.67 -0.3
732,499 + EX31_RS20475 0.67 +0.0
732,499 + EX31_RS20475 0.67 -0.4
732,499 + EX31_RS20475 0.67 +0.8
732,499 + EX31_RS20475 0.67 -0.3
732,499 + EX31_RS20475 0.67 -0.5
732,499 + EX31_RS20475 0.67 -0.2
732,499 + EX31_RS20475 0.67 +0.5
732,499 + EX31_RS20475 0.67 +1.4
732,500 - EX31_RS20475 0.67 +0.7
732,500 - EX31_RS20475 0.67 +0.2
732,500 - EX31_RS20475 0.67 -0.4
732,500 - EX31_RS20475 0.67 -0.3
732,500 - EX31_RS20475 0.67 +0.0
732,500 - EX31_RS20475 0.67 -0.4
732,521 + EX31_RS20475 0.69 +0.7
732,521 + EX31_RS20475 0.69 -1.2
732,572 + EX31_RS20475 0.74 +0.3
732,573 - EX31_RS20475 0.74 -1.6
732,610 + EX31_RS20475 0.78 +1.2
732,610 + EX31_RS20475 0.78 +0.4
732,611 - EX31_RS20475 0.78 -2.5
732,611 - EX31_RS20475 0.78 -1.9
732,621 + EX31_RS20475 0.79 -0.1
732,621 + EX31_RS20475 0.79 -0.4
732,621 + EX31_RS20475 0.79 -1.1
732,621 + EX31_RS20475 0.79 -0.1
732,621 + EX31_RS20475 0.79 +0.7
732,621 + EX31_RS20475 0.79 +1.2
732,622 - EX31_RS20475 0.79 +0.7
732,622 - EX31_RS20475 0.79 +0.1
732,625 + EX31_RS20475 0.79 +0.1
732,625 + EX31_RS20475 0.79 +0.9
732,625 + EX31_RS20475 0.79 +0.7
732,639 - EX31_RS20475 0.80 +0.7
732,686 + EX31_RS20475 0.85 -0.4
732,686 + EX31_RS20475 0.85 +0.2
732,686 + EX31_RS20475 0.85 -0.4
732,686 + EX31_RS20475 0.85 -0.7
732,687 - EX31_RS20475 0.85 -0.9
732,696 - EX31_RS20475 0.86 +0.6
732,696 - EX31_RS20475 0.86 -1.7
732,696 - EX31_RS20475 0.86 +0.5
732,839 + -0.4
732,839 + +0.2
732,839 + +0.7
732,839 + +0.8
732,840 - -1.1
732,840 - -0.5
732,853 - -1.5
732,868 + +0.1
732,868 + -0.5
732,868 + +1.0
732,953 - EX31_RS20480 0.32 -0.2
732,964 + EX31_RS20480 0.35 -1.0
733,007 + EX31_RS20480 0.48 +0.0
733,007 + EX31_RS20480 0.48 -0.3
733,007 + EX31_RS20480 0.48 -0.8
733,007 + EX31_RS20480 0.48 +0.2
733,050 - EX31_RS20480 0.60 -0.2
733,050 - EX31_RS20480 0.60 -0.3
733,067 + EX31_RS20480 0.65 -0.8
733,067 + EX31_RS20480 0.65 -0.9
733,067 + EX31_RS20480 0.65 +0.8
733,067 + EX31_RS20480 0.65 +1.0
733,067 + EX31_RS20480 0.65 -1.3
733,067 + EX31_RS20480 0.65 +1.3
733,068 - EX31_RS20480 0.66 -1.6
733,068 - EX31_RS20480 0.66 -2.0
733,068 - EX31_RS20480 0.66 +0.1
733,068 - EX31_RS20480 0.66 +0.7
733,068 - EX31_RS20480 0.66 +1.6
733,070 + EX31_RS20480 0.66 +0.3
733,071 - EX31_RS20480 0.66 -0.4
733,071 - EX31_RS20480 0.66 +0.2
733,108 + EX31_RS20480 0.77 +0.5
733,109 - EX31_RS20480 0.77 -1.4
733,184 + +0.7
733,193 + +0.1
733,194 - EX31_RS25580 0.10 +1.1
733,194 - EX31_RS25580 0.10 +0.8
733,198 - EX31_RS25580 0.12 +0.0
733,198 - EX31_RS25580 0.12 +0.3
733,198 - EX31_RS25580 0.12 -1.1
733,247 + EX31_RS25580 0.33 +0.6
733,248 - EX31_RS25580 0.33 -0.4
733,248 - EX31_RS25580 0.33 +0.4
733,248 - EX31_RS25580 0.33 -0.3
733,248 - EX31_RS25580 0.33 +0.9
733,253 - EX31_RS25580 0.35 -1.2
733,358 - EX31_RS25580 0.81 +0.4
733,406 + +0.3
733,406 + +0.0
733,414 + -0.5
733,415 - -0.1
733,418 + -1.4
733,418 + -2.5
733,419 - +0.9
733,419 - -1.4
733,419 - -0.2
733,437 + +0.8
733,437 + -0.2
733,437 + -2.3
733,438 - -0.2
733,438 - +0.1
733,442 - +1.0
733,442 - -0.2
733,442 - +1.5
733,442 - -1.5
733,490 + -0.6
733,490 + -1.6
733,491 - +0.2
733,491 - -0.3
733,493 + -1.8
733,494 - +1.4
733,541 - EX31_RS20485 0.13 +0.2
733,541 - EX31_RS20485 0.13 +1.2
733,541 - EX31_RS20485 0.13 -0.8
733,578 + EX31_RS20485 0.17 +2.0
733,578 + EX31_RS20485 0.17 +0.8
733,578 + EX31_RS20485 0.17 -0.1
733,578 + EX31_RS20485 0.17 -0.1
733,579 - EX31_RS20485 0.17 -0.1
733,579 - EX31_RS20485 0.17 +0.2
733,579 - EX31_RS20485 0.17 +0.7
733,579 - EX31_RS20485 0.17 -0.4
733,579 - EX31_RS20485 0.17 -0.6
733,647 + EX31_RS20485 0.24 -0.5
733,647 + EX31_RS20485 0.24 -0.3
733,728 + EX31_RS20485 0.33 +0.2
733,728 + EX31_RS20485 0.33 +0.1
733,728 + EX31_RS20485 0.33 -0.6
733,728 + EX31_RS20485 0.33 -0.4
733,728 + EX31_RS20485 0.33 -0.4
733,728 + EX31_RS20485 0.33 +0.7
733,728 + EX31_RS20485 0.33 +0.1
733,729 - EX31_RS20485 0.33 -0.7
733,729 - EX31_RS20485 0.33 +0.9
733,798 - EX31_RS20485 0.40 -0.3
733,798 - EX31_RS20485 0.40 -0.6
733,807 + EX31_RS20485 0.41 -0.4
733,808 - EX31_RS20485 0.41 -0.5
733,808 - EX31_RS20485 0.41 +0.3
733,812 - EX31_RS20485 0.42 -0.4
733,889 + EX31_RS20485 0.50 +0.3
733,890 - EX31_RS20485 0.50 -0.9
733,925 + EX31_RS20485 0.54 +0.8
733,969 + EX31_RS20485 0.58 -0.1
733,969 + EX31_RS20485 0.58 +0.6
733,970 - EX31_RS20485 0.58 -1.2
733,989 - EX31_RS20485 0.60 -2.0
734,017 + EX31_RS20485 0.63 -0.2
734,100 + EX31_RS20485 0.72 +1.3
734,101 - EX31_RS20485 0.72 -0.1
734,153 - EX31_RS20485 0.77 +0.6
734,153 - EX31_RS20485 0.77 +0.3
734,153 - EX31_RS20485 0.77 -0.0
734,153 - EX31_RS20485 0.77 -0.1
734,153 - EX31_RS20485 0.77 -0.5
734,239 - EX31_RS20485 0.86 -0.5
734,262 - EX31_RS20485 0.89 +0.1
734,319 + +0.6
734,320 - +0.1
734,395 - -0.0

Or see this region's nucleotide sequence