Strain Fitness in Rahnella sp. WP5

Strain Fitness in Rahnella sp. WP5 around EX31_RS12355

Experiment: MGL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG

download strain data

Per-strain Table

Position	Strand	LocusTag	Fraction	MGL
				remove
139,403	+	EX31_RS12345	0.41	-0.8
139,403	+	EX31_RS12345	0.41	-0.4
139,403	+	EX31_RS12345	0.41	+1.2
139,412	+	EX31_RS12345	0.44	-0.9
139,412	+	EX31_RS12345	0.44	-1.2
139,413	-	EX31_RS12345	0.45	-0.9
139,433	+	EX31_RS12345	0.51	+0.4
139,433	+	EX31_RS12345	0.51	+0.2
139,436	+	EX31_RS12345	0.52	-0.7
139,504	+	EX31_RS12345	0.75	-0.6
139,590	-			-2.1
139,590	-			+0.1
139,592	-			+0.5
139,604	+			+0.4
139,605	-			-0.5
139,606	+			+1.0
139,606	+			+0.4
139,606	+			-0.7
139,607	-			+1.1
139,607	-			-0.4
139,607	-			-0.3
139,611	-			+0.9
139,627	+			+0.0
139,669	+			-0.5
139,669	+			-0.4
139,688	+			-1.9
139,688	+			+0.0
139,688	+			-0.2
139,688	+			+0.5
139,688	+			+0.8
139,688	+			+0.4
139,689	-	EX31_RS12350	0.10	-0.3
139,689	-	EX31_RS12350	0.10	-0.3
139,689	-	EX31_RS12350	0.10	+0.4
139,744	+	EX31_RS12350	0.17	+0.9
139,745	-	EX31_RS12350	0.17	-0.2
139,896	-	EX31_RS12350	0.37	-1.0
139,992	-	EX31_RS12350	0.49	-0.6
139,992	-	EX31_RS12350	0.49	+0.3
140,139	-	EX31_RS12350	0.68	-1.1
140,139	-	EX31_RS12350	0.68	-0.0
140,385	+			-0.3
140,385	+			+0.2
140,385	+			+0.3
140,385	+			-0.9
140,385	+			-1.0
140,385	+			+0.4
140,385	+			-0.5
140,386	-			-0.4
140,386	-			+0.7
140,386	-			-2.2
140,500	+	EX31_RS12355	0.15	-0.1
140,500	+	EX31_RS12355	0.15	-0.4
140,500	+	EX31_RS12355	0.15	-0.4
140,500	+	EX31_RS12355	0.15	-0.1
140,500	+	EX31_RS12355	0.15	-0.6
140,500	+	EX31_RS12355	0.15	+0.4
140,500	+	EX31_RS12355	0.15	+0.6
140,500	+	EX31_RS12355	0.15	-1.7
140,500	+	EX31_RS12355	0.15	+0.3
140,500	+	EX31_RS12355	0.15	+0.8
140,500	+	EX31_RS12355	0.15	-0.5
140,500	+	EX31_RS12355	0.15	-0.2
140,500	+	EX31_RS12355	0.15	+0.2
140,500	+	EX31_RS12355	0.15	+0.2
140,500	+	EX31_RS12355	0.15	+0.4
140,500	+	EX31_RS12355	0.15	-0.4
140,500	+	EX31_RS12355	0.15	-0.7
140,500	+	EX31_RS12355	0.15	+0.6
140,500	+	EX31_RS12355	0.15	+0.4
140,500	+	EX31_RS12355	0.15	-0.1
140,500	+	EX31_RS12355	0.15	-0.5
140,500	+	EX31_RS12355	0.15	+0.1
140,500	+	EX31_RS12355	0.15	+0.2
140,500	+	EX31_RS12355	0.15	-0.4
140,500	+	EX31_RS12355	0.15	+1.3
140,500	+	EX31_RS12355	0.15	-0.0
140,501	-	EX31_RS12355	0.15	-0.5
140,501	-	EX31_RS12355	0.15	-0.6
140,501	-	EX31_RS12355	0.15	-0.0
140,501	-	EX31_RS12355	0.15	-0.7
140,501	-	EX31_RS12355	0.15	-1.1
140,501	-	EX31_RS12355	0.15	+0.2
140,501	-	EX31_RS12355	0.15	-0.9
140,501	-	EX31_RS12355	0.15	-1.1
140,501	-	EX31_RS12355	0.15	+0.5
140,501	-	EX31_RS12355	0.15	-0.5
140,501	-	EX31_RS12355	0.15	-3.1
140,501	-	EX31_RS12355	0.15	-0.0
140,501	-	EX31_RS12355	0.15	+0.1
140,501	-	EX31_RS12355	0.15	-1.3
140,501	-	EX31_RS12355	0.15	-0.5
140,501	-	EX31_RS12355	0.15	+0.2
140,501	-	EX31_RS12355	0.15	+0.1
140,501	-	EX31_RS12355	0.15	-0.1
140,501	-	EX31_RS12355	0.15	-0.1
140,501	-	EX31_RS12355	0.15	-0.6
140,501	-	EX31_RS12355	0.15	-0.5
140,501	-	EX31_RS12355	0.15	+0.5
140,501	-	EX31_RS12355	0.15	+0.8
140,501	-	EX31_RS12355	0.15	-0.6
140,501	-	EX31_RS12355	0.15	-0.8
140,501	-	EX31_RS12355	0.15	+0.1
140,501	-	EX31_RS12355	0.15	+0.0
140,501	-	EX31_RS12355	0.15	+0.2
140,501	-	EX31_RS12355	0.15	+0.0
140,501	-	EX31_RS12355	0.15	-0.7
140,501	-	EX31_RS12355	0.15	+0.1
140,501	-	EX31_RS12355	0.15	-0.6
140,501	-	EX31_RS12355	0.15	-0.8
140,501	-	EX31_RS12355	0.15	-0.9
140,501	-	EX31_RS12355	0.15	+0.2
140,503	+	EX31_RS12355	0.16	-0.2
140,503	+	EX31_RS12355	0.16	-0.0
140,503	+	EX31_RS12355	0.16	+0.4
140,503	+	EX31_RS12355	0.16	-0.3
140,503	+	EX31_RS12355	0.16	-0.8
140,503	+	EX31_RS12355	0.16	+0.3
140,504	-	EX31_RS12355	0.16	-0.1
140,504	-	EX31_RS12355	0.16	+0.0
140,509	+	EX31_RS12355	0.17	+0.4
140,509	+	EX31_RS12355	0.17	-1.0
140,509	+	EX31_RS12355	0.17	-0.5
140,509	+	EX31_RS12355	0.17	-0.3
140,510	-	EX31_RS12355	0.17	-0.8
140,526	+	EX31_RS12355	0.19	+1.0
140,543	+	EX31_RS12355	0.22	+0.6
140,543	+	EX31_RS12355	0.22	+0.3
140,544	-	EX31_RS12355	0.22	-0.1
140,544	-	EX31_RS12355	0.22	+0.2
140,544	-	EX31_RS12355	0.22	-0.4
140,544	-	EX31_RS12355	0.22	-0.1
140,578	+	EX31_RS12355	0.27	-0.8
140,579	-	EX31_RS12355	0.27	+0.1
140,721	+	EX31_RS12355	0.49	-1.1
140,722	-	EX31_RS12355	0.50	-1.1
140,722	-	EX31_RS12355	0.50	-1.8
140,757	-	EX31_RS12355	0.55	-0.7
140,778	-	EX31_RS12355	0.58	+0.6
140,788	+	EX31_RS12355	0.60	-0.6
140,789	-	EX31_RS12355	0.60	-0.9
140,789	-	EX31_RS12355	0.60	-0.8
140,789	-	EX31_RS12355	0.60	-0.2
140,808	+	EX31_RS12355	0.63	-0.2
140,808	+	EX31_RS12355	0.63	+0.2
140,809	-	EX31_RS12355	0.63	+0.0
140,835	+	EX31_RS12355	0.67	+0.6
140,835	+	EX31_RS12355	0.67	+0.3
140,901	+	EX31_RS12355	0.77	+0.0
140,968	+	EX31_RS12355	0.88	+0.6
140,968	+	EX31_RS12355	0.88	-0.4
140,968	+	EX31_RS12355	0.88	-0.8
140,968	+	EX31_RS12355	0.88	+1.0
140,969	-	EX31_RS12355	0.88	+0.4
140,969	-	EX31_RS12355	0.88	+1.1
140,969	-	EX31_RS12355	0.88	-0.7
140,969	-	EX31_RS12355	0.88	+0.0
140,969	-	EX31_RS12355	0.88	+0.6
140,969	-	EX31_RS12355	0.88	-0.2
140,969	-	EX31_RS12355	0.88	-0.1
141,046	+			-0.1
141,046	+			+0.9
141,046	+			+1.0
141,047	-			+0.7
141,047	-			-0.6
141,047	-			-0.1
141,047	-			-0.2
141,057	+			-0.3
141,057	+			-0.5
141,057	+			-0.7
141,057	+			+0.4
141,057	+			+0.3
141,058	-			+0.7
141,058	-			-0.5
141,058	-			-0.8
141,058	-			-0.4
141,060	+			+0.1
141,060	+			-0.2
141,060	+			+2.1
141,060	+			+0.3
141,061	-			-0.4
141,061	-			+0.5
141,061	-			-0.7
141,061	-			+0.6
141,061	-			+1.0
141,061	-			+0.5
141,061	-			-0.3
141,079	+			+0.2
141,079	+			+0.8
141,129	+			-0.3
141,129	+			+0.4
141,129	+			+0.5
141,129	+			+0.1
141,129	+			-0.2
141,129	+			+0.0
141,130	-			+0.8
141,130	-			+0.1
141,130	-			-0.4
141,130	-			-1.1
141,130	-			+0.2
141,130	-			+0.5
141,130	-			+0.1
141,130	-			+0.2
141,130	-			+0.1
141,130	-			-0.9
141,130	-			+1.0
141,133	+			-0.3
141,133	+			-0.5
141,133	+			-0.2
141,133	+			+0.0
141,133	+			-1.2
141,133	+			-0.3
141,133	+			-1.1
141,133	+			+1.4
141,134	-			-0.2
141,134	-			-0.7
141,134	-			-0.2
141,134	-			-2.4
141,134	-			-0.3
141,134	-			-0.6
141,134	-			+0.1
141,134	-			+0.5
141,134	-			+0.2
141,140	+			+0.1
141,140	+			+0.0
141,140	+			+0.3
141,141	-			-0.8
141,158	+			+0.1
141,158	+			+0.0
141,159	-			-0.0
141,274	+	EX31_RS12360	0.13	-1.9
141,331	+	EX31_RS12360	0.18	-1.5
141,331	+	EX31_RS12360	0.18	+0.8
141,425	-	EX31_RS12360	0.26	-1.8
141,571	-	EX31_RS12360	0.39	+0.2
141,624	+	EX31_RS12360	0.44	-0.7
141,625	-	EX31_RS12360	0.44	+0.3
141,696	+	EX31_RS12360	0.50	-0.3
141,728	+	EX31_RS12360	0.53	+0.3
141,728	+	EX31_RS12360	0.53	+0.7
141,760	+	EX31_RS12360	0.56	-0.5
141,760	+	EX31_RS12360	0.56	-0.9
141,760	+	EX31_RS12360	0.56	-0.4
141,760	+	EX31_RS12360	0.56	-0.9
141,760	+	EX31_RS12360	0.56	+1.0
141,760	+	EX31_RS12360	0.56	-1.8
141,760	+	EX31_RS12360	0.56	+0.1
141,760	+	EX31_RS12360	0.56	+0.4
141,761	-	EX31_RS12360	0.56	-0.2
141,761	-	EX31_RS12360	0.56	+0.0
141,761	-	EX31_RS12360	0.56	+0.1
141,761	-	EX31_RS12360	0.56	-0.5
141,761	-	EX31_RS12360	0.56	+0.4
141,761	-	EX31_RS12360	0.56	-1.1
141,761	-	EX31_RS12360	0.56	+1.6
141,780	+	EX31_RS12360	0.57	-1.4
141,817	-	EX31_RS12360	0.61	-0.1
141,900	+	EX31_RS12360	0.68	+0.8
141,901	-	EX31_RS12360	0.68	+0.1
141,901	-	EX31_RS12360	0.68	+0.3
141,901	-	EX31_RS12360	0.68	-0.6
141,937	-	EX31_RS12360	0.71	-0.1
141,940	+	EX31_RS12360	0.71	+1.6
141,940	+	EX31_RS12360	0.71	-0.9
141,940	+	EX31_RS12360	0.71	-0.2
141,940	+	EX31_RS12360	0.71	+0.7
141,941	-	EX31_RS12360	0.72	+0.3
142,033	-	EX31_RS12360	0.80	-0.6
142,033	-	EX31_RS12360	0.80	-1.8
142,033	-	EX31_RS12360	0.80	-0.1
142,033	-	EX31_RS12360	0.80	+0.1
142,033	-	EX31_RS12360	0.80	-0.4
142,033	-	EX31_RS12360	0.80	+0.6

Or see this region's nucleotide sequence