Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3825

Experiment: Putrescine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Putrescine (N)
4,238,336	+				+0.7
4,238,337	-				-1.1
4,238,337	-				-0.8
4,238,393	-				+0.7
4,238,627	+		Pf1N1B4_3824	0.36	+2.0
4,238,628	-		Pf1N1B4_3824	0.36	+0.1
4,238,663	+		Pf1N1B4_3824	0.40	+0.3
4,238,663	+		Pf1N1B4_3824	0.40	-0.3
4,238,663	+		Pf1N1B4_3824	0.40	-1.3
4,238,663	+		Pf1N1B4_3824	0.40	-1.3
4,238,663	+		Pf1N1B4_3824	0.40	-0.8
4,238,663	+		Pf1N1B4_3824	0.40	-1.3
4,238,663	+				+0.7
4,238,663	+		Pf1N1B4_3824	0.40	-0.3
4,238,664	-		Pf1N1B4_3824	0.40	-0.3
4,238,664	-		Pf1N1B4_3824	0.40	-0.9
4,238,664	-		Pf1N1B4_3824	0.40	+0.7
4,238,664	-		Pf1N1B4_3824	0.40	-0.8
4,238,664	-				-0.3
4,238,664	-		Pf1N1B4_3824	0.40	-1.5
4,238,664	-		Pf1N1B4_3824	0.40	-0.6
4,238,664	-		Pf1N1B4_3824	0.40	-2.6
4,238,664	-		Pf1N1B4_3824	0.40	+0.4
4,238,682	+				+0.7
4,238,683	-		Pf1N1B4_3824	0.42	-0.3
4,238,683	-		Pf1N1B4_3824	0.42	-1.6
4,238,704	+		Pf1N1B4_3824	0.45	-0.6
4,238,705	-				-0.9
4,238,705	-		Pf1N1B4_3824	0.45	+1.5
4,238,707	+		Pf1N1B4_3824	0.45	-2.3
4,238,707	+		Pf1N1B4_3824	0.45	-1.3
4,238,708	-		Pf1N1B4_3824	0.46	+1.7
4,238,708	-		Pf1N1B4_3824	0.46	-0.1
4,238,726	+		Pf1N1B4_3824	0.48	-0.6
4,238,726	+		Pf1N1B4_3824	0.48	+0.3
4,238,726	+		Pf1N1B4_3824	0.48	-1.9
4,238,727	-		Pf1N1B4_3824	0.48	+0.5
4,238,727	-		Pf1N1B4_3824	0.48	+0.7
4,238,727	-		Pf1N1B4_3824	0.48	-1.3
4,238,727	-		Pf1N1B4_3824	0.48	-0.6
4,238,729	+		Pf1N1B4_3824	0.48	+0.7
4,238,729	+		Pf1N1B4_3824	0.48	-0.3
4,238,729	+		Pf1N1B4_3824	0.48	-0.7
4,238,729	+		Pf1N1B4_3824	0.48	-1.3
4,238,729	+				+0.3
4,238,729	+		Pf1N1B4_3824	0.48	-1.3
4,238,729	+		Pf1N1B4_3824	0.48	+0.4
4,238,729	+		Pf1N1B4_3824	0.48	-2.1
4,238,729	+		Pf1N1B4_3824	0.48	-1.3
4,238,730	-		Pf1N1B4_3824	0.48	+1.0
4,238,792	+		Pf1N1B4_3824	0.56	+1.0
4,238,792	+		Pf1N1B4_3824	0.56	-0.6
4,238,792	+		Pf1N1B4_3824	0.56	-1.3
4,238,792	+		Pf1N1B4_3824	0.56	-1.9
4,238,792	+		Pf1N1B4_3824	0.56	-2.9
4,238,792	+		Pf1N1B4_3824	0.56	-0.3
4,238,792	+		Pf1N1B4_3824	0.56	-1.3
4,238,792	+		Pf1N1B4_3824	0.56	-1.3
4,238,793	-		Pf1N1B4_3824	0.56	+0.7
4,238,793	-		Pf1N1B4_3824	0.56	+0.3
4,238,793	-		Pf1N1B4_3824	0.56	-0.0
4,238,834	+		Pf1N1B4_3824	0.61	-0.3
4,238,834	+				-0.3
4,238,834	+		Pf1N1B4_3824	0.61	-2.9
4,238,834	+		Pf1N1B4_3824	0.61	-0.3
4,238,834	+		Pf1N1B4_3824	0.61	-0.3
4,238,835	-		Pf1N1B4_3824	0.61	+0.3
4,238,835	-		Pf1N1B4_3824	0.61	+0.1
4,238,958	+		Pf1N1B4_3824	0.76	-0.4
4,239,004	+		Pf1N1B4_3824	0.82	-0.3
4,239,004	+		Pf1N1B4_3824	0.82	-0.3
4,239,004	+		Pf1N1B4_3824	0.82	-1.0
4,239,004	+		Pf1N1B4_3824	0.82	-1.3
4,239,004	+		Pf1N1B4_3824	0.82	+0.7
4,239,004	+				-0.3
4,239,005	-		Pf1N1B4_3824	0.82	-0.6
4,239,005	-		Pf1N1B4_3824	0.82	-2.6
4,239,038	+		Pf1N1B4_3824	0.86	-0.3
4,239,038	+		Pf1N1B4_3824	0.86	+0.1
4,239,038	+				+0.7
4,239,038	+		Pf1N1B4_3824	0.86	-1.2
4,239,038	+		Pf1N1B4_3824	0.86	-0.7
4,239,039	-		Pf1N1B4_3824	0.86	-0.8
4,239,063	+		Pf1N1B4_3824	0.89	+0.0
4,239,063	+		Pf1N1B4_3824	0.89	-0.9
4,239,174	+				-0.3
4,239,174	+				+1.3
4,239,174	+				-0.6
4,239,174	+				+0.2
4,239,175	-				-1.3
4,239,192	-				-0.0
4,239,193	+				-1.9
4,239,193	+				-0.3
4,239,193	+				-0.1
4,239,193	+				+1.3
4,239,193	+				-0.3
4,239,193	+				-0.7
4,239,193	+				-0.9
4,239,193	+				-1.3
4,239,193	+				-1.5
4,239,193	+				+2.0
4,239,193	+				+1.0
4,239,193	+				-1.3
4,239,193	+				+0.4
4,239,193	+				-0.3
4,239,193	+				-0.1
4,239,193	+				-0.1
4,239,193	+				-0.3
4,239,193	+				+0.5
4,239,194	-				+0.7
4,239,194	-				-0.1
4,239,194	-				-1.3
4,239,194	-				-0.3
4,239,194	-				+0.7
4,239,194	-				+0.3
4,239,196	+				+0.0
4,239,196	+				+0.7
4,239,196	+				-0.7
4,239,196	+				-1.3
4,239,197	-				-2.3
4,239,237	+				+0.7
4,239,237	+				+1.3
4,239,257	+		Pf1N1B4_3825	0.18	-1.9
4,239,257	+		Pf1N1B4_3825	0.18	+0.7
4,239,257	+		Pf1N1B4_3825	0.18	-1.3
4,239,257	+		Pf1N1B4_3825	0.18	-0.3
4,239,312	+		Pf1N1B4_3825	0.58	-1.5
4,239,312	+		Pf1N1B4_3825	0.58	-2.3
4,239,313	-		Pf1N1B4_3825	0.59	-0.3
4,239,313	-		Pf1N1B4_3825	0.59	-0.4
4,239,313	-		Pf1N1B4_3825	0.59	-0.9
4,239,313	-		Pf1N1B4_3825	0.59	-1.9
4,239,332	+				-0.5
4,239,332	+				+0.7
4,239,337	+				-0.6
4,239,337	+				+1.3
4,239,337	+				+1.0
4,239,337	+				+0.7
4,239,338	-				-0.9
4,239,338	-				+0.1
4,239,341	+				+0.3
4,239,341	+				-0.9
4,239,341	+				-0.3
4,239,341	+				+0.4
4,239,341	+				-0.9
4,239,341	+				+0.1
4,239,341	+				+1.7
4,239,341	+				+0.4
4,239,342	-				-0.2
4,239,342	-				-0.2
4,239,342	-				-0.2
4,239,342	-				+1.3
4,239,374	+				-0.3
4,239,374	+				+0.7
4,239,374	+				-1.3
4,239,374	+				-0.3
4,239,374	+				-0.9
4,239,375	-				-1.3
4,239,781	-		Pf1N1B4_3826	0.19	+1.7
4,239,781	-		Pf1N1B4_3826	0.19	+0.5
4,239,985	+		Pf1N1B4_3826	0.28	+0.2
4,239,985	+		Pf1N1B4_3826	0.28	+0.2
4,240,007	+		Pf1N1B4_3826	0.29	-0.3
4,240,007	+		Pf1N1B4_3826	0.29	-0.3
4,240,036	+		Pf1N1B4_3826	0.30	-0.3
4,240,036	+		Pf1N1B4_3826	0.30	-0.3
4,240,036	+		Pf1N1B4_3826	0.30	+1.1
4,240,036	+		Pf1N1B4_3826	0.30	+0.2
4,240,036	+		Pf1N1B4_3826	0.30	-0.6
4,240,036	+		Pf1N1B4_3826	0.30	+1.5
4,240,141	-		Pf1N1B4_3826	0.34	-0.3
4,240,249	+		Pf1N1B4_3826	0.39	-0.3
4,240,249	+		Pf1N1B4_3826	0.39	+0.5
4,240,250	-		Pf1N1B4_3826	0.39	+0.4
4,240,303	+		Pf1N1B4_3826	0.41	+1.0
4,240,303	+		Pf1N1B4_3826	0.41	-0.6
4,240,303	+		Pf1N1B4_3826	0.41	-0.4
4,240,303	+		Pf1N1B4_3826	0.41	+0.2
4,240,303	+		Pf1N1B4_3826	0.41	+0.0
4,240,304	-		Pf1N1B4_3826	0.41	+0.1
4,240,304	-		Pf1N1B4_3826	0.41	-0.9
4,240,304	-				-0.7
4,240,304	-				+0.3
4,240,304	-		Pf1N1B4_3826	0.41	-0.7
4,240,304	-		Pf1N1B4_3826	0.41	-1.5
4,240,304	-		Pf1N1B4_3826	0.41	-2.9
4,240,304	-		Pf1N1B4_3826	0.41	-0.7
4,240,304	-		Pf1N1B4_3826	0.41	+0.3
4,240,304	-		Pf1N1B4_3826	0.41	-0.3
4,240,304	-				-1.3
4,240,304	-		Pf1N1B4_3826	0.41	+0.1
4,240,304	-		Pf1N1B4_3826	0.41	-0.7