Strain Fitness in Methanococcus maripaludis S2 around MMP_RS00440

Experiment: Formate deepwell autotrophic conditions

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS00435 and MMP_RS00440 are separated by 228 nucleotidesMMP_RS00440 and MMP_RS00445 are separated by 143 nucleotidesMMP_RS00445 and MMP_RS00450 are separated by 15 nucleotides MMP_RS00435: MMP_RS00435 - CPBP family intramembrane metalloprotease, at 86,570 to 87,379 _RS00435 MMP_RS00440: MMP_RS00440 - TRAM domain-containing protein, at 87,608 to 87,817 _RS00440 MMP_RS00445: MMP_RS00445 - 7-carboxy-7-deazaguanine synthase QueE, at 87,961 to 88,689 _RS00445 MMP_RS00450: MMP_RS00450 - 4Fe-4S binding protein, at 88,705 to 89,550 _RS00450 Position (kb) 87 88Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 86.610 kb on + strandat 86.673 kb on + strand, within MMP_RS00435at 86.679 kb on + strand, within MMP_RS00435at 86.684 kb on - strand, within MMP_RS00435at 86.734 kb on - strand, within MMP_RS00435at 86.737 kb on + strand, within MMP_RS00435at 86.789 kb on - strand, within MMP_RS00435at 86.790 kb on + strand, within MMP_RS00435at 86.851 kb on - strand, within MMP_RS00435at 86.855 kb on - strand, within MMP_RS00435at 86.855 kb on - strand, within MMP_RS00435at 86.855 kb on - strand, within MMP_RS00435at 86.855 kb on - strand, within MMP_RS00435at 86.856 kb on + strand, within MMP_RS00435at 86.902 kb on - strand, within MMP_RS00435at 86.902 kb on - strand, within MMP_RS00435at 86.940 kb on - strand, within MMP_RS00435at 86.968 kb on - strand, within MMP_RS00435at 86.987 kb on - strand, within MMP_RS00435at 87.110 kb on - strand, within MMP_RS00435at 87.113 kb on + strand, within MMP_RS00435at 87.134 kb on - strand, within MMP_RS00435at 87.218 kb on + strand, within MMP_RS00435at 87.363 kb on - strandat 87.368 kb on - strandat 87.488 kb on - strandat 87.491 kb on + strandat 87.612 kb on + strandat 87.821 kb on - strandat 87.829 kb on - strandat 87.832 kb on - strandat 87.832 kb on - strandat 87.833 kb on + strandat 87.835 kb on - strandat 87.836 kb on + strandat 87.836 kb on + strandat 87.837 kb on - strandat 87.838 kb on + strandat 87.838 kb on + strandat 87.839 kb on - strandat 87.839 kb on - strandat 87.839 kb on - strandat 87.839 kb on - strandat 87.840 kb on + strandat 87.840 kb on + strandat 87.840 kb on + strandat 87.840 kb on + strandat 87.840 kb on + strandat 87.847 kb on - strandat 87.856 kb on - strandat 87.856 kb on - strandat 87.856 kb on - strandat 87.856 kb on - strandat 87.857 kb on + strandat 87.857 kb on + strandat 87.861 kb on - strandat 87.878 kb on - strandat 87.882 kb on - strandat 87.882 kb on - strandat 87.884 kb on - strandat 87.884 kb on - strandat 87.884 kb on - strandat 87.884 kb on - strandat 87.884 kb on - strandat 87.885 kb on + strandat 88.056 kb on - strand, within MMP_RS00445at 88.057 kb on + strand, within MMP_RS00445at 88.057 kb on + strand, within MMP_RS00445at 88.057 kb on + strand, within MMP_RS00445at 88.058 kb on - strand, within MMP_RS00445at 88.058 kb on - strand, within MMP_RS00445at 88.059 kb on + strand, within MMP_RS00445at 88.059 kb on + strand, within MMP_RS00445at 88.061 kb on + strand, within MMP_RS00445at 88.061 kb on + strand, within MMP_RS00445at 88.061 kb on + strand, within MMP_RS00445at 88.135 kb on - strand, within MMP_RS00445at 88.136 kb on + strand, within MMP_RS00445at 88.231 kb on - strand, within MMP_RS00445at 88.281 kb on - strand, within MMP_RS00445at 88.347 kb on + strand, within MMP_RS00445at 88.404 kb on + strand, within MMP_RS00445at 88.406 kb on + strand, within MMP_RS00445at 88.551 kb on - strand, within MMP_RS00445at 88.581 kb on + strand, within MMP_RS00445at 88.590 kb on - strand, within MMP_RS00445at 88.591 kb on + strand, within MMP_RS00445at 88.608 kb on + strand, within MMP_RS00445at 88.636 kb on - strandat 88.637 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate deepwell autotrophic conditions
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86,610 + +0.9
86,673 + MMP_RS00435 0.13 +0.1
86,679 + MMP_RS00435 0.13 +0.3
86,684 - MMP_RS00435 0.14 -0.1
86,734 - MMP_RS00435 0.20 +0.9
86,737 + MMP_RS00435 0.21 +0.2
86,789 - MMP_RS00435 0.27 +0.3
86,790 + MMP_RS00435 0.27 +0.3
86,851 - MMP_RS00435 0.35 +0.1
86,855 - MMP_RS00435 0.35 +0.5
86,855 - MMP_RS00435 0.35 +0.2
86,855 - MMP_RS00435 0.35 +1.4
86,855 - MMP_RS00435 0.35 +0.2
86,856 + MMP_RS00435 0.35 +0.4
86,902 - MMP_RS00435 0.41 +0.2
86,902 - MMP_RS00435 0.41 +0.9
86,940 - MMP_RS00435 0.46 -0.8
86,968 - MMP_RS00435 0.49 +0.6
86,987 - MMP_RS00435 0.51 +0.8
87,110 - MMP_RS00435 0.67 -0.2
87,113 + MMP_RS00435 0.67 +0.5
87,134 - MMP_RS00435 0.70 -0.0
87,218 + MMP_RS00435 0.80 +0.7
87,363 - -0.0
87,368 - +1.3
87,488 - +0.2
87,491 + -0.2
87,612 + -1.9
87,821 - -2.7
87,829 - -1.9
87,832 - -0.9
87,832 - -0.9
87,833 + -4.0
87,835 - -3.2
87,836 + -4.1
87,836 + -3.0
87,837 - -4.3
87,838 + -5.4
87,838 + -2.4
87,839 - +1.1
87,839 - -5.1
87,839 - -3.7
87,839 - -4.2
87,840 + -2.8
87,840 + -4.1
87,840 + -3.6
87,840 + -4.8
87,840 + -3.3
87,847 - -3.6
87,856 - -3.5
87,856 - -4.2
87,856 - -4.2
87,856 - -3.1
87,857 + -4.8
87,857 + -3.8
87,861 - -1.8
87,878 - -5.0
87,882 - -1.5
87,882 - -3.6
87,884 - -2.1
87,884 - -3.1
87,884 - -2.7
87,884 - -2.3
87,884 - -2.1
87,885 + -2.5
88,056 - MMP_RS00445 0.13 +0.2
88,057 + MMP_RS00445 0.13 +0.2
88,057 + MMP_RS00445 0.13 +0.4
88,057 + MMP_RS00445 0.13 +0.3
88,058 - MMP_RS00445 0.13 +0.7
88,058 - MMP_RS00445 0.13 +1.6
88,059 + MMP_RS00445 0.13 +1.0
88,059 + MMP_RS00445 0.13 -0.3
88,061 + MMP_RS00445 0.14 +0.3
88,061 + MMP_RS00445 0.14 +0.5
88,061 + MMP_RS00445 0.14 -0.4
88,135 - MMP_RS00445 0.24 -0.4
88,136 + MMP_RS00445 0.24 +0.3
88,231 - MMP_RS00445 0.37 -0.3
88,281 - MMP_RS00445 0.44 -0.5
88,347 + MMP_RS00445 0.53 -0.2
88,404 + MMP_RS00445 0.61 +0.4
88,406 + MMP_RS00445 0.61 +0.6
88,551 - MMP_RS00445 0.81 +0.1
88,581 + MMP_RS00445 0.85 +0.2
88,590 - MMP_RS00445 0.86 +0.5
88,591 + MMP_RS00445 0.86 +1.2
88,608 + MMP_RS00445 0.89 +0.0
88,636 - +0.1
88,637 + +0.2

Or see this region's nucleotide sequence