Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13925

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS13920 and BWI76_RS13925 are separated by 261 nucleotidesBWI76_RS13925 and BWI76_RS13930 are separated by 265 nucleotides BWI76_RS13920: BWI76_RS13920 - magnesium-translocating P-type ATPase, at 2,904,171 to 2,906,903 _RS13920 BWI76_RS13925: BWI76_RS13925 - catalase/peroxidase HPI, at 2,907,165 to 2,909,348 _RS13925 BWI76_RS13930: BWI76_RS13930 - putative LysR-family transcriptional regulator, at 2,909,614 to 2,910,546 _RS13930 Position (kb) 2907 2908 2909 2910Strain fitness (log2 ratio) -2 -1 0 1 2at 2906.322 kb on - strand, within BWI76_RS13920at 2906.606 kb on + strand, within BWI76_RS13920at 2907.013 kb on + strandat 2907.707 kb on - strand, within BWI76_RS13925at 2907.808 kb on - strand, within BWI76_RS13925at 2908.205 kb on + strand, within BWI76_RS13925at 2908.546 kb on - strand, within BWI76_RS13925at 2908.644 kb on - strand, within BWI76_RS13925at 2908.663 kb on + strand, within BWI76_RS13925at 2909.003 kb on + strand, within BWI76_RS13925at 2909.021 kb on - strandat 2909.081 kb on + strand, within BWI76_RS13925at 2909.526 kb on + strandat 2909.557 kb on - strandat 2909.626 kb on + strandat 2909.626 kb on + strandat 2909.634 kb on - strandat 2909.962 kb on - strand, within BWI76_RS13930at 2910.272 kb on - strand, within BWI76_RS13930

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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2,906,322 - BWI76_RS13920 0.79 -1.2
2,906,606 + BWI76_RS13920 0.89 +0.5
2,907,013 + -0.2
2,907,707 - BWI76_RS13925 0.25 -0.1
2,907,808 - BWI76_RS13925 0.29 -0.8
2,908,205 + BWI76_RS13925 0.48 -0.2
2,908,546 - BWI76_RS13925 0.63 -0.5
2,908,644 - BWI76_RS13925 0.68 +0.1
2,908,663 + BWI76_RS13925 0.69 -0.5
2,909,003 + BWI76_RS13925 0.84 +0.2
2,909,021 - +1.8
2,909,081 + BWI76_RS13925 0.88 +0.2
2,909,526 + -0.8
2,909,557 - -0.2
2,909,626 + +0.1
2,909,626 + -2.0
2,909,634 - -0.1
2,909,962 - BWI76_RS13930 0.37 -0.0
2,910,272 - BWI76_RS13930 0.71 +0.0

Or see this region's nucleotide sequence