Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS08800

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS08790 and BWI76_RS08795 are separated by 4 nucleotidesBWI76_RS08795 and BWI76_RS08800 overlap by 4 nucleotidesBWI76_RS08800 and BWI76_RS08805 are separated by 111 nucleotides BWI76_RS08790: BWI76_RS08790 - two-component sensor histidine kinase, at 1,853,744 to 1,854,841 _RS08790 BWI76_RS08795: BWI76_RS08795 - DNA-binding response regulator, at 1,854,846 to 1,855,517 _RS08795 BWI76_RS08800: BWI76_RS08800 - phosphoethanolamine transferase EptA, at 1,855,514 to 1,857,157 _RS08800 BWI76_RS08805: BWI76_RS08805 - gluconeogenesis factor, at 1,857,269 to 1,858,174 _RS08805 Position (kb) 1855 1856 1857 1858Strain fitness (log2 ratio) -1 0 1at 1854.619 kb on + strand, within BWI76_RS08790at 1854.629 kb on - strand, within BWI76_RS08790at 1854.638 kb on + strand, within BWI76_RS08790at 1854.821 kb on - strandat 1854.851 kb on - strandat 1854.893 kb on - strandat 1854.929 kb on + strand, within BWI76_RS08795at 1854.937 kb on - strand, within BWI76_RS08795at 1854.952 kb on + strand, within BWI76_RS08795at 1855.344 kb on + strand, within BWI76_RS08795at 1855.586 kb on - strandat 1855.839 kb on - strand, within BWI76_RS08800at 1856.083 kb on - strand, within BWI76_RS08800at 1856.122 kb on + strand, within BWI76_RS08800at 1856.866 kb on + strand, within BWI76_RS08800at 1857.043 kb on + strandat 1857.130 kb on - strandat 1857.170 kb on + strandat 1857.267 kb on + strandat 1857.274 kb on - strandat 1857.288 kb on + strandat 1857.296 kb on - strandat 1857.313 kb on - strandat 1857.347 kb on + strandat 1857.491 kb on + strand, within BWI76_RS08805at 1857.550 kb on - strand, within BWI76_RS08805at 1857.725 kb on + strand, within BWI76_RS08805at 1857.978 kb on - strand, within BWI76_RS08805at 1858.072 kb on + strand, within BWI76_RS08805

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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1,854,619 + BWI76_RS08790 0.80 -0.2
1,854,629 - BWI76_RS08790 0.81 -0.0
1,854,638 + BWI76_RS08790 0.81 +1.0
1,854,821 - +0.4
1,854,851 - -0.2
1,854,893 - -0.2
1,854,929 + BWI76_RS08795 0.12 -0.3
1,854,937 - BWI76_RS08795 0.14 -0.3
1,854,952 + BWI76_RS08795 0.16 -0.4
1,855,344 + BWI76_RS08795 0.74 +0.2
1,855,586 - -0.0
1,855,839 - BWI76_RS08800 0.20 -0.2
1,856,083 - BWI76_RS08800 0.35 -0.5
1,856,122 + BWI76_RS08800 0.37 -0.7
1,856,866 + BWI76_RS08800 0.82 -1.2
1,857,043 + -0.5
1,857,130 - +0.3
1,857,170 + +0.4
1,857,267 + -0.4
1,857,274 - +0.4
1,857,288 + -0.1
1,857,296 - -0.4
1,857,313 - +0.0
1,857,347 + -0.1
1,857,491 + BWI76_RS08805 0.25 +0.9
1,857,550 - BWI76_RS08805 0.31 +0.3
1,857,725 + BWI76_RS08805 0.50 +0.6
1,857,978 - BWI76_RS08805 0.78 -0.3
1,858,072 + BWI76_RS08805 0.89 -1.2

Or see this region's nucleotide sequence