Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0789 and Shewana3_0790 are separated by 198 nucleotides Shewana3_0790 and Shewana3_0791 are separated by 168 nucleotides
Shewana3_0789: Shewana3_0789 - sterol desaturase family protein (RefSeq), at 909,849 to 910,712
_0789
Shewana3_0790: Shewana3_0790 - hypothetical protein (RefSeq), at 910,911 to 911,546
_0790
Shewana3_0791: Shewana3_0791 - UDP-N-acetylmuramate (RefSeq), at 911,715 to 913,112
_0791
Position (kb) 910
911
912 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 910.047 kb on + strand, within Shewana3_0789 at 910.064 kb on + strand, within Shewana3_0789 at 910.120 kb on + strand, within Shewana3_0789 at 910.120 kb on + strand, within Shewana3_0789 at 910.128 kb on - strand, within Shewana3_0789 at 910.138 kb on - strand, within Shewana3_0789 at 910.171 kb on - strand, within Shewana3_0789 at 910.185 kb on - strand, within Shewana3_0789 at 910.259 kb on + strand, within Shewana3_0789 at 910.424 kb on - strand, within Shewana3_0789 at 910.429 kb on - strand, within Shewana3_0789 at 910.579 kb on + strand, within Shewana3_0789 at 910.768 kb on - strand at 910.796 kb on - strand at 910.972 kb on - strand at 911.086 kb on + strand, within Shewana3_0790 at 911.099 kb on + strand, within Shewana3_0790 at 911.181 kb on - strand, within Shewana3_0790 at 911.181 kb on - strand, within Shewana3_0790 at 911.242 kb on - strand, within Shewana3_0790 at 911.407 kb on - strand, within Shewana3_0790 at 911.515 kb on + strand at 911.515 kb on + strand at 911.617 kb on - strand at 911.791 kb on + strand at 911.964 kb on + strand, within Shewana3_0791 at 911.964 kb on + strand, within Shewana3_0791 at 911.964 kb on + strand, within Shewana3_0791 at 912.344 kb on + strand, within Shewana3_0791 at 912.360 kb on + strand, within Shewana3_0791
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 910,047 + Shewana3_0789 0.23 -0.6 910,064 + Shewana3_0789 0.25 +1.0 910,120 + Shewana3_0789 0.31 -0.9 910,120 + Shewana3_0789 0.31 +0.3 910,128 - Shewana3_0789 0.32 +0.3 910,138 - Shewana3_0789 0.33 -1.1 910,171 - Shewana3_0789 0.37 -2.2 910,185 - Shewana3_0789 0.39 +0.6 910,259 + Shewana3_0789 0.47 -0.3 910,424 - Shewana3_0789 0.67 -1.6 910,429 - Shewana3_0789 0.67 -3.5 910,579 + Shewana3_0789 0.84 -0.1 910,768 - +0.6 910,796 - +1.9 910,972 - +0.1 911,086 + Shewana3_0790 0.28 -0.9 911,099 + Shewana3_0790 0.30 -1.9 911,181 - Shewana3_0790 0.42 -2.0 911,181 - Shewana3_0790 0.42 -0.3 911,242 - Shewana3_0790 0.52 -0.2 911,407 - Shewana3_0790 0.78 -0.2 911,515 + +0.8 911,515 + -1.8 911,617 - -0.0 911,791 + -0.6 911,964 + Shewana3_0791 0.18 +0.3 911,964 + Shewana3_0791 0.18 -0.1 911,964 + Shewana3_0791 0.18 +1.2 912,344 + Shewana3_0791 0.45 -1.7 912,360 + Shewana3_0791 0.46 +0.2
Or see this region's nucleotide sequence