Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0535 and Shewana3_0536 are separated by 4 nucleotides Shewana3_0536 and Shewana3_0537 are separated by 118 nucleotides
Shewana3_0535: Shewana3_0535 - major facilitator transporter (RefSeq), at 628,904 to 630,172
_0535
Shewana3_0536: Shewana3_0536 - hypothetical protein (RefSeq), at 630,177 to 631,040
_0536
Shewana3_0537: Shewana3_0537 - aspartate kinase (RefSeq), at 631,159 to 632,601
_0537
Position (kb) 630
631
632 Strain fitness (log2 ratio) -2
-1
0
1 at 629.488 kb on + strand, within Shewana3_0535 at 629.644 kb on + strand, within Shewana3_0535 at 629.735 kb on + strand, within Shewana3_0535 at 629.742 kb on + strand, within Shewana3_0535 at 629.775 kb on - strand at 629.816 kb on + strand, within Shewana3_0535 at 630.031 kb on - strand, within Shewana3_0535 at 630.078 kb on + strand at 630.084 kb on - strand at 630.185 kb on - strand at 630.269 kb on + strand, within Shewana3_0536 at 630.381 kb on - strand, within Shewana3_0536 at 630.450 kb on - strand, within Shewana3_0536 at 630.540 kb on - strand, within Shewana3_0536 at 630.763 kb on - strand, within Shewana3_0536 at 630.786 kb on - strand, within Shewana3_0536 at 630.848 kb on + strand, within Shewana3_0536 at 631.016 kb on + strand at 631.016 kb on + strand at 631.016 kb on + strand at 631.024 kb on - strand at 631.024 kb on - strand at 631.336 kb on + strand, within Shewana3_0537 at 631.344 kb on - strand, within Shewana3_0537 at 631.378 kb on - strand, within Shewana3_0537 at 631.392 kb on + strand, within Shewana3_0537 at 631.526 kb on + strand, within Shewana3_0537 at 631.534 kb on - strand, within Shewana3_0537 at 631.608 kb on + strand, within Shewana3_0537 at 631.682 kb on - strand, within Shewana3_0537 at 631.877 kb on - strand, within Shewana3_0537 at 632.000 kb on + strand, within Shewana3_0537
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 629,488 + Shewana3_0535 0.46 -1.2 629,644 + Shewana3_0535 0.58 -0.8 629,735 + Shewana3_0535 0.65 +0.3 629,742 + Shewana3_0535 0.66 -0.1 629,775 - +1.5 629,816 + Shewana3_0535 0.72 -0.9 630,031 - Shewana3_0535 0.89 -1.4 630,078 + +0.8 630,084 - -1.7 630,185 - -0.1 630,269 + Shewana3_0536 0.11 +0.5 630,381 - Shewana3_0536 0.24 -0.6 630,450 - Shewana3_0536 0.32 -1.2 630,540 - Shewana3_0536 0.42 -2.1 630,763 - Shewana3_0536 0.68 -0.8 630,786 - Shewana3_0536 0.70 -0.2 630,848 + Shewana3_0536 0.78 -0.9 631,016 + -0.0 631,016 + +0.5 631,016 + -1.6 631,024 - -0.7 631,024 - -1.9 631,336 + Shewana3_0537 0.12 -0.8 631,344 - Shewana3_0537 0.13 -0.2 631,378 - Shewana3_0537 0.15 -0.6 631,392 + Shewana3_0537 0.16 -0.4 631,526 + Shewana3_0537 0.25 +0.0 631,534 - Shewana3_0537 0.26 +0.7 631,608 + Shewana3_0537 0.31 +0.1 631,682 - Shewana3_0537 0.36 +0.8 631,877 - Shewana3_0537 0.50 +0.5 632,000 + Shewana3_0537 0.58 +0.4
Or see this region's nucleotide sequence