Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0392 and Shewana3_0393 are separated by 48 nucleotides Shewana3_0393 and Shewana3_0394 overlap by 1 nucleotides Shewana3_0394 and Shewana3_0395 are separated by 148 nucleotides Shewana3_0395 and Shewana3_0396 are separated by 4 nucleotides
Shewana3_0392: Shewana3_0392 - hypothetical protein (RefSeq), at 452,864 to 453,499
_0392
Shewana3_0393: Shewana3_0393 - tyrosine recombinase XerC (RefSeq), at 453,548 to 454,447
_0393
Shewana3_0394: Shewana3_0394 - HAD family hydrolase (RefSeq), at 454,447 to 455,169
_0394
Shewana3_0395: Shewana3_0395 - HupE/UreJ protein (RefSeq), at 455,318 to 455,896
_0395
Shewana3_0396: Shewana3_0396 - putative transcriptional regulator (RefSeq), at 455,901 to 456,404
_0396
Position (kb) 454
455
456 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 453.458 kb on + strand at 453.485 kb on - strand at 453.493 kb on + strand at 453.501 kb on - strand at 453.501 kb on - strand at 453.502 kb on - strand at 453.686 kb on - strand, within Shewana3_0393 at 453.751 kb on - strand, within Shewana3_0393 at 453.860 kb on - strand, within Shewana3_0393 at 453.975 kb on - strand, within Shewana3_0393 at 454.004 kb on + strand, within Shewana3_0393 at 454.012 kb on - strand, within Shewana3_0393 at 454.260 kb on + strand, within Shewana3_0393 at 454.295 kb on + strand, within Shewana3_0393 at 454.408 kb on - strand at 454.408 kb on - strand at 454.659 kb on - strand, within Shewana3_0394 at 454.701 kb on - strand, within Shewana3_0394 at 454.709 kb on + strand, within Shewana3_0394 at 454.755 kb on - strand, within Shewana3_0394 at 454.837 kb on - strand, within Shewana3_0394 at 454.937 kb on - strand, within Shewana3_0394 at 455.110 kb on + strand at 455.217 kb on + strand at 455.218 kb on + strand at 455.331 kb on + strand at 455.420 kb on - strand, within Shewana3_0395 at 455.434 kb on - strand, within Shewana3_0395 at 455.465 kb on + strand, within Shewana3_0395 at 455.603 kb on + strand, within Shewana3_0395 at 455.730 kb on + strand, within Shewana3_0395 at 455.738 kb on + strand, within Shewana3_0395 at 455.740 kb on - strand, within Shewana3_0395 at 455.899 kb on + strand at 455.906 kb on - strand at 456.045 kb on - strand, within Shewana3_0396
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 453,458 + +0.4 453,485 - +0.6 453,493 + +1.3 453,501 - -0.9 453,501 - +1.6 453,502 - +1.6 453,686 - Shewana3_0393 0.15 -0.7 453,751 - Shewana3_0393 0.23 -1.4 453,860 - Shewana3_0393 0.35 +1.6 453,975 - Shewana3_0393 0.47 -2.0 454,004 + Shewana3_0393 0.51 -1.4 454,012 - Shewana3_0393 0.52 +1.6 454,260 + Shewana3_0393 0.79 -0.0 454,295 + Shewana3_0393 0.83 +0.6 454,408 - -2.2 454,408 - -2.5 454,659 - Shewana3_0394 0.29 -0.9 454,701 - Shewana3_0394 0.35 -0.1 454,709 + Shewana3_0394 0.36 -2.4 454,755 - Shewana3_0394 0.43 -3.6 454,837 - Shewana3_0394 0.54 -2.3 454,937 - Shewana3_0394 0.68 -0.4 455,110 + -1.9 455,217 + -0.6 455,218 + -0.9 455,331 + -0.3 455,420 - Shewana3_0395 0.18 +1.6 455,434 - Shewana3_0395 0.20 +1.6 455,465 + Shewana3_0395 0.25 -1.8 455,603 + Shewana3_0395 0.49 -3.2 455,730 + Shewana3_0395 0.71 -0.8 455,738 + Shewana3_0395 0.73 -0.6 455,740 - Shewana3_0395 0.73 +0.5 455,899 + -2.1 455,906 - +0.6 456,045 - Shewana3_0396 0.29 -0.7
Or see this region's nucleotide sequence