Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0371

Experiment: outer cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0368 and Shewana3_0369 are separated by 59 nucleotidesShewana3_0369 and Shewana3_0370 are separated by 94 nucleotidesShewana3_0370 and Shewana3_0371 are separated by 116 nucleotidesShewana3_0371 and Shewana3_0372 are separated by 13 nucleotides Shewana3_0368: Shewana3_0368 - hypothetical protein (RefSeq), at 405,208 to 405,573 _0368 Shewana3_0369: Shewana3_0369 - hypothetical protein (RefSeq), at 405,633 to 405,965 _0369 Shewana3_0370: Shewana3_0370 - hypothetical protein (RefSeq), at 406,060 to 406,314 _0370 Shewana3_0371: Shewana3_0371 - acriflavin resistance protein (RefSeq), at 406,431 to 409,520 _0371 Shewana3_0372: Shewana3_0372 - RND family efflux transporter MFP subunit (RefSeq), at 409,534 to 410,652 _0372 Position (kb) 406 407 408 409 410Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 405.509 kb on + strand, within Shewana3_0368at 405.638 kb on + strandat 405.818 kb on - strand, within Shewana3_0369at 405.848 kb on - strand, within Shewana3_0369at 405.895 kb on - strand, within Shewana3_0369at 405.895 kb on - strand, within Shewana3_0369at 405.917 kb on + strand, within Shewana3_0369at 405.927 kb on + strand, within Shewana3_0369at 405.935 kb on - strandat 405.935 kb on - strandat 406.187 kb on - strand, within Shewana3_0370at 406.258 kb on + strand, within Shewana3_0370at 406.266 kb on - strand, within Shewana3_0370at 406.702 kb on + strandat 406.702 kb on + strandat 406.979 kb on - strand, within Shewana3_0371at 407.029 kb on + strand, within Shewana3_0371at 407.037 kb on - strand, within Shewana3_0371at 407.281 kb on - strand, within Shewana3_0371at 407.288 kb on + strand, within Shewana3_0371at 407.304 kb on + strand, within Shewana3_0371at 407.378 kb on + strand, within Shewana3_0371at 407.472 kb on + strand, within Shewana3_0371at 407.472 kb on + strand, within Shewana3_0371at 407.629 kb on - strand, within Shewana3_0371at 407.677 kb on + strand, within Shewana3_0371at 407.677 kb on + strand, within Shewana3_0371at 407.683 kb on + strand, within Shewana3_0371at 407.719 kb on - strand, within Shewana3_0371at 407.752 kb on + strand, within Shewana3_0371at 407.752 kb on + strand, within Shewana3_0371at 407.760 kb on - strand, within Shewana3_0371at 407.760 kb on - strand, within Shewana3_0371at 407.853 kb on + strand, within Shewana3_0371at 407.999 kb on - strand, within Shewana3_0371at 408.042 kb on + strand, within Shewana3_0371at 408.200 kb on + strand, within Shewana3_0371at 408.278 kb on + strand, within Shewana3_0371at 408.471 kb on - strand, within Shewana3_0371at 408.471 kb on - strand, within Shewana3_0371at 408.522 kb on - strand, within Shewana3_0371at 408.558 kb on + strand, within Shewana3_0371at 408.665 kb on + strand, within Shewana3_0371at 408.806 kb on + strand, within Shewana3_0371at 408.961 kb on - strand, within Shewana3_0371at 409.106 kb on + strand, within Shewana3_0371at 409.114 kb on - strand, within Shewana3_0371at 409.166 kb on + strand, within Shewana3_0371at 409.166 kb on + strand, within Shewana3_0371at 409.174 kb on - strand, within Shewana3_0371at 409.225 kb on + strandat 409.233 kb on - strandat 409.233 kb on - strandat 409.233 kb on - strandat 409.280 kb on - strandat 409.312 kb on - strandat 409.482 kb on + strandat 409.530 kb on - strandat 409.550 kb on + strandat 409.561 kb on + strandat 409.569 kb on - strandat 409.686 kb on + strand, within Shewana3_0372at 409.712 kb on + strand, within Shewana3_0372at 409.755 kb on + strand, within Shewana3_0372at 409.763 kb on - strand, within Shewana3_0372at 409.776 kb on + strand, within Shewana3_0372at 409.970 kb on + strand, within Shewana3_0372at 409.978 kb on - strand, within Shewana3_0372at 409.978 kb on - strand, within Shewana3_0372at 410.019 kb on + strand, within Shewana3_0372at 410.290 kb on + strand, within Shewana3_0372at 410.495 kb on - strand, within Shewana3_0372

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Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
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405,509 + Shewana3_0368 0.82 -1.3
405,638 + -1.8
405,818 - Shewana3_0369 0.56 -1.7
405,848 - Shewana3_0369 0.65 +0.0
405,895 - Shewana3_0369 0.79 -0.3
405,895 - Shewana3_0369 0.79 +0.9
405,917 + Shewana3_0369 0.85 -0.7
405,927 + Shewana3_0369 0.88 +0.1
405,935 - -0.9
405,935 - +0.6
406,187 - Shewana3_0370 0.50 +3.2
406,258 + Shewana3_0370 0.78 +3.1
406,266 - Shewana3_0370 0.81 +2.3
406,702 + +0.4
406,702 + +0.0
406,979 - Shewana3_0371 0.18 -0.8
407,029 + Shewana3_0371 0.19 -1.1
407,037 - Shewana3_0371 0.20 -0.2
407,281 - Shewana3_0371 0.28 +0.2
407,288 + Shewana3_0371 0.28 -1.2
407,304 + Shewana3_0371 0.28 +0.3
407,378 + Shewana3_0371 0.31 -1.0
407,472 + Shewana3_0371 0.34 -1.1
407,472 + Shewana3_0371 0.34 +0.1
407,629 - Shewana3_0371 0.39 -0.2
407,677 + Shewana3_0371 0.40 -0.1
407,677 + Shewana3_0371 0.40 -0.6
407,683 + Shewana3_0371 0.41 +0.4
407,719 - Shewana3_0371 0.42 -0.5
407,752 + Shewana3_0371 0.43 -1.0
407,752 + Shewana3_0371 0.43 -1.0
407,760 - Shewana3_0371 0.43 +0.1
407,760 - Shewana3_0371 0.43 -2.2
407,853 + Shewana3_0371 0.46 -1.4
407,999 - Shewana3_0371 0.51 -1.2
408,042 + Shewana3_0371 0.52 -1.1
408,200 + Shewana3_0371 0.57 -0.6
408,278 + Shewana3_0371 0.60 +0.6
408,471 - Shewana3_0371 0.66 -0.9
408,471 - Shewana3_0371 0.66 +0.3
408,522 - Shewana3_0371 0.68 -3.0
408,558 + Shewana3_0371 0.69 -0.7
408,665 + Shewana3_0371 0.72 -1.0
408,806 + Shewana3_0371 0.77 -0.7
408,961 - Shewana3_0371 0.82 -1.1
409,106 + Shewana3_0371 0.87 -4.3
409,114 - Shewana3_0371 0.87 +0.6
409,166 + Shewana3_0371 0.89 -0.3
409,166 + Shewana3_0371 0.89 -2.3
409,174 - Shewana3_0371 0.89 -0.7
409,225 + -0.6
409,233 - +0.4
409,233 - +0.2
409,233 - +0.1
409,280 - -1.1
409,312 - -0.0
409,482 + +0.2
409,530 - +0.0
409,550 + -0.2
409,561 + +0.5
409,569 - -1.0
409,686 + Shewana3_0372 0.14 -0.1
409,712 + Shewana3_0372 0.16 -2.6
409,755 + Shewana3_0372 0.20 -0.0
409,763 - Shewana3_0372 0.20 -1.0
409,776 + Shewana3_0372 0.22 -0.1
409,970 + Shewana3_0372 0.39 -0.1
409,978 - Shewana3_0372 0.40 -0.0
409,978 - Shewana3_0372 0.40 +0.1
410,019 + Shewana3_0372 0.43 -1.0
410,290 + Shewana3_0372 0.68 +0.3
410,495 - Shewana3_0372 0.86 +0.4

Or see this region's nucleotide sequence