Strain Fitness in Shewanella sp. ANA-3 around Shewana3_R0016

Experiment: outer cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0237 and Shewana3_R0016 are separated by 478 nucleotidesShewana3_R0016 and Shewana3_R0017 are separated by 292 nucleotides Shewana3_0237: Shewana3_0237 - redoxin domain-containing protein (RefSeq), at 266,253 to 266,834 _0237 Shewana3_R0016: Shewana3_R0016 - 16S ribosomal RNA (RefSeq), at 267,313 to 268,867 _R0016 Shewana3_R0017: Shewana3_R0017 - 23S ribosomal RNA (RefSeq), at 269,160 to 272,054 _R0017 Position (kb) 267 268 269Strain fitness (log2 ratio) -2 -1 0 1at 266.526 kb on + strand, within Shewana3_0237at 266.546 kb on + strand, within Shewana3_0237at 266.568 kb on + strand, within Shewana3_0237at 266.624 kb on - strand, within Shewana3_0237at 266.671 kb on + strand, within Shewana3_0237at 266.674 kb on - strand, within Shewana3_0237at 266.738 kb on - strand, within Shewana3_0237at 266.800 kb on - strandat 267.077 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
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266,526 + Shewana3_0237 0.47 +0.7
266,546 + Shewana3_0237 0.50 -0.9
266,568 + Shewana3_0237 0.54 -0.2
266,624 - Shewana3_0237 0.64 -0.9
266,671 + Shewana3_0237 0.72 -1.0
266,674 - Shewana3_0237 0.72 -1.2
266,738 - Shewana3_0237 0.83 -1.3
266,800 - -0.4
267,077 + -1.8

Or see this region's nucleotide sequence