Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4147

Experiment: outer cut, LB soft agar motility assay

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	outer cut, LB soft agar motility assay
5,558	-				-0.3
5,608	+				+0.2
5,609	+				+1.2
5,610	+				-0.8
5,617	-				-0.1
5,617	-				-0.4
5,630	-				+0.7
5,630	-				-0.7
5,639	-				-1.2
5,673	-				-0.7
5,676	+				+0.2
5,690	+				-1.0
5,705	-				-2.2
5,723	+				+1.2
5,723	+				+1.2
5,731	-				+0.2
5,735	-				-0.7
5,751	-				-0.4
5,751	-				-0.8
5,751	-				-0.1
5,751	-				-2.4
5,751	-				-0.5
5,751	-				-0.8
5,751	-				+0.4
5,783	+				-0.1
5,809	-				-2.5
5,809	-				-1.0
5,815	+				-0.8
5,842	+				-0.8
5,850	-				+0.4
5,850	-				-2.5
5,850	-				+0.1
5,851	+				-0.0
5,851	+				+1.2
5,851	+				+1.2
5,852	+				+1.2
5,856	+				+1.2
5,856	+				+1.2
5,864	-		Shewana3_4146	0.11	-0.7
5,874	+		Shewana3_4146	0.12	+1.2
5,874	+		Shewana3_4146	0.12	+1.2
5,874	+		Shewana3_4146	0.12	+1.2
5,874	+		Shewana3_4146	0.12	-0.8
5,883	-		Shewana3_4146	0.13	-0.5
5,883	-		Shewana3_4146	0.13	-1.2
5,888	+		Shewana3_4146	0.14	-1.7
5,888	+		Shewana3_4146	0.14	+2.2
5,888	+		Shewana3_4146	0.14	-1.6
5,888	+		Shewana3_4146	0.14	+1.2
5,896	-		Shewana3_4146	0.15	-0.8
5,896	-		Shewana3_4146	0.15	-0.9
5,898	+		Shewana3_4146	0.15	-1.4
5,907	-		Shewana3_4146	0.17	-0.1
5,907	-		Shewana3_4146	0.17	-1.0
5,907	-		Shewana3_4146	0.17	+3.2
5,907	-		Shewana3_4146	0.17	-0.4
5,909	+		Shewana3_4146	0.17	-0.5
5,911	-		Shewana3_4146	0.17	-0.2
5,917	-		Shewana3_4146	0.18	-0.2
5,917	-		Shewana3_4146	0.18	+1.1
5,917	-		Shewana3_4146	0.18	-2.7
5,917	-		Shewana3_4146	0.18	-1.6
5,917	-		Shewana3_4146	0.18	+0.8
6,003	+		Shewana3_4146	0.30	-0.4
6,014	+		Shewana3_4146	0.32	-0.8
6,021	-		Shewana3_4146	0.32	-1.5
6,022	-		Shewana3_4146	0.33	-2.3
6,022	-		Shewana3_4146	0.33	-0.3
6,022	-		Shewana3_4146	0.33	-1.6
6,022	-		Shewana3_4146	0.33	-0.1
6,029	+		Shewana3_4146	0.34	-1.6
6,029	+		Shewana3_4146	0.34	-0.8
6,037	-		Shewana3_4146	0.35	+0.6
6,072	+		Shewana3_4146	0.40	-0.4
6,080	+		Shewana3_4146	0.41	-0.1
6,085	+		Shewana3_4146	0.41	+0.9
6,088	-		Shewana3_4146	0.42	-0.9
6,093	-		Shewana3_4146	0.43	-0.4
6,093	-		Shewana3_4146	0.43	-1.3
6,095	+		Shewana3_4146	0.43	+1.2
6,095	+		Shewana3_4146	0.43	+1.2
6,095	+		Shewana3_4146	0.43	-1.1
6,095	+		Shewana3_4146	0.43	-1.5
6,095	+		Shewana3_4146	0.43	-1.1
6,095	+		Shewana3_4146	0.43	+1.2
6,095	+		Shewana3_4146	0.43	+0.2
6,102	-		Shewana3_4146	0.44	+0.3
6,102	-		Shewana3_4146	0.44	-0.1
6,102	-		Shewana3_4146	0.44	-2.0
6,102	-		Shewana3_4146	0.44	-2.2
6,102	-		Shewana3_4146	0.44	+0.2
6,102	-		Shewana3_4146	0.44	-0.9
6,102	-		Shewana3_4146	0.44	-0.7
6,102	-		Shewana3_4146	0.44	+0.2
6,102	-		Shewana3_4146	0.44	-1.2
6,102	-		Shewana3_4146	0.44	+0.6
6,102	-		Shewana3_4146	0.44	+0.5
6,102	-		Shewana3_4146	0.44	-0.7
6,102	-		Shewana3_4146	0.44	-0.8
6,102	-		Shewana3_4146	0.44	-0.5
6,103	-		Shewana3_4146	0.44	-0.8
6,103	-		Shewana3_4146	0.44	-1.2
6,117	-		Shewana3_4146	0.46	-0.4
6,126	+		Shewana3_4146	0.47	+1.0
6,127	-		Shewana3_4146	0.47	-1.0
6,129	+		Shewana3_4146	0.48	-1.4
6,138	-		Shewana3_4146	0.49	+1.0
6,164	+		Shewana3_4146	0.52	+1.2
6,164	+		Shewana3_4146	0.52	-0.4
6,164	+		Shewana3_4146	0.52	+2.9
6,172	-		Shewana3_4146	0.54	-1.3
6,172	-		Shewana3_4146	0.54	+0.7
6,172	-		Shewana3_4146	0.54	-1.1
6,174	+		Shewana3_4146	0.54	+1.2
6,174	+		Shewana3_4146	0.54	+1.2
6,174	+		Shewana3_4146	0.54	-0.4
6,177	-		Shewana3_4146	0.54	-0.6
6,182	-		Shewana3_4146	0.55	-0.9
6,182	-		Shewana3_4146	0.55	+0.4
6,188	+		Shewana3_4146	0.56	+1.2
6,188	+		Shewana3_4146	0.56	+2.0
6,188	+		Shewana3_4146	0.56	+1.2
6,188	+		Shewana3_4146	0.56	+1.2
6,188	+		Shewana3_4146	0.56	-0.4
6,188	+		Shewana3_4146	0.56	+1.2
6,188	+		Shewana3_4146	0.56	+1.2
6,188	+		Shewana3_4146	0.56	+1.2
6,196	-		Shewana3_4146	0.57	-2.3
6,196	-		Shewana3_4146	0.57	-1.1
6,196	-		Shewana3_4146	0.57	+0.1
6,196	-		Shewana3_4146	0.57	+0.1
6,196	-		Shewana3_4146	0.57	+0.2
6,196	-		Shewana3_4146	0.57	+0.6
6,196	-		Shewana3_4146	0.57	+0.8
6,196	-		Shewana3_4146	0.57	-1.5
6,196	-		Shewana3_4146	0.57	+0.2
6,196	-		Shewana3_4146	0.57	-2.1
6,196	-		Shewana3_4146	0.57	+0.0
6,196	-		Shewana3_4146	0.57	-1.1
6,196	-		Shewana3_4146	0.57	+1.0
6,206	-		Shewana3_4146	0.58	-2.0
6,206	-		Shewana3_4146	0.58	-1.7
6,275	-		Shewana3_4146	0.68	-0.6
6,276	+		Shewana3_4146	0.68	+0.2
6,294	+		Shewana3_4146	0.71	-0.4
6,294	+		Shewana3_4146	0.71	+0.2
6,297	-		Shewana3_4146	0.71	-0.7
6,299	+		Shewana3_4146	0.71	+1.2
6,299	+		Shewana3_4146	0.71	-0.7
6,299	+		Shewana3_4146	0.71	-0.6
6,307	-		Shewana3_4146	0.72	-1.4
6,309	+		Shewana3_4146	0.73	+1.2
6,309	+		Shewana3_4146	0.73	-0.1
6,309	+		Shewana3_4146	0.73	+0.2
6,309	+		Shewana3_4146	0.73	-0.4
6,309	+		Shewana3_4146	0.73	+0.2
6,309	+		Shewana3_4146	0.73	+1.2
6,309	+		Shewana3_4146	0.73	+1.2
6,312	-		Shewana3_4146	0.73	-0.4
6,317	-		Shewana3_4146	0.74	+0.3
6,317	-		Shewana3_4146	0.74	-2.0
6,317	-		Shewana3_4146	0.74	-4.5
6,345	+		Shewana3_4146	0.78	+2.2
6,346	+		Shewana3_4146	0.78	+2.2
6,354	+		Shewana3_4146	0.79	-3.0
6,356	+		Shewana3_4146	0.79	-0.8
6,359	+		Shewana3_4146	0.80	+1.1
6,362	-		Shewana3_4146	0.80	+1.6
6,364	-		Shewana3_4146	0.80	+0.3
6,364	-		Shewana3_4146	0.80	+0.7
6,364	-		Shewana3_4146	0.80	-0.2
6,364	-		Shewana3_4146	0.80	-0.7
6,413	+		Shewana3_4146	0.87	-1.4
6,413	+		Shewana3_4146	0.87	-0.4
6,421	-		Shewana3_4146	0.88	-1.8
6,421	-		Shewana3_4146	0.88	+0.8
6,467	+				-1.1
6,467	-				-1.5
6,616	+				-0.4
6,624	-				+0.4
6,671	+				+1.2
6,689	-		Shewana3_4147	0.11	-1.7
6,690	-		Shewana3_4147	0.11	-1.9
6,703	+		Shewana3_4147	0.12	+0.2
6,714	+		Shewana3_4147	0.13	+1.2
6,714	+		Shewana3_4147	0.13	+0.2
6,714	+		Shewana3_4147	0.13	+1.2
6,722	-		Shewana3_4147	0.14	-3.1
6,722	-		Shewana3_4147	0.14	-0.2
6,771	+		Shewana3_4147	0.18	-1.4
6,771	+		Shewana3_4147	0.18	+1.2
6,779	-		Shewana3_4147	0.18	-2.0
6,792	+		Shewana3_4147	0.19	-1.8
6,795	-		Shewana3_4147	0.20	-0.7
6,797	+		Shewana3_4147	0.20	+0.2
6,797	+		Shewana3_4147	0.20	-0.4
6,805	-		Shewana3_4147	0.20	-0.3
6,821	-		Shewana3_4147	0.22	-0.1
6,822	-		Shewana3_4147	0.22	-0.1
6,836	-		Shewana3_4147	0.23	+0.0
6,864	+		Shewana3_4147	0.25	+1.2
6,864	+		Shewana3_4147	0.25	-0.8
6,864	+		Shewana3_4147	0.25	+1.2
6,864	+		Shewana3_4147	0.25	-0.4
6,867	-		Shewana3_4147	0.25	-0.8
6,871	-		Shewana3_4147	0.26	+2.1
6,872	+		Shewana3_4147	0.26	+0.0
6,872	+		Shewana3_4147	0.26	-1.8
6,872	-		Shewana3_4147	0.26	-0.8
6,880	-		Shewana3_4147	0.26	+0.5
6,894	-		Shewana3_4147	0.28	-0.1
6,904	+		Shewana3_4147	0.28	+1.2
6,909	+		Shewana3_4147	0.29	+1.2
6,909	+		Shewana3_4147	0.29	+1.2
6,909	+		Shewana3_4147	0.29	+1.2
6,909	+		Shewana3_4147	0.29	+1.2
6,909	+		Shewana3_4147	0.29	+0.2
6,909	+		Shewana3_4147	0.29	+0.9
6,909	+		Shewana3_4147	0.29	+1.2
6,909	+		Shewana3_4147	0.29	-0.4
6,911	+		Shewana3_4147	0.29	+1.2
6,911	+		Shewana3_4147	0.29	+4.8
6,911	+		Shewana3_4147	0.29	+1.2
6,911	+		Shewana3_4147	0.29	+2.2
6,911	+		Shewana3_4147	0.29	+1.2
6,911	+		Shewana3_4147	0.29	+0.2
6,916	-		Shewana3_4147	0.29	-0.5
6,917	-		Shewana3_4147	0.29	-1.1
6,917	-		Shewana3_4147	0.29	+0.0
6,917	-		Shewana3_4147	0.29	+0.1
6,917	-		Shewana3_4147	0.29	+0.0
6,917	-		Shewana3_4147	0.29	+0.1
6,917	-		Shewana3_4147	0.29	+0.7
6,917	-		Shewana3_4147	0.29	+0.2
6,917	-		Shewana3_4147	0.29	-0.9
6,917	-		Shewana3_4147	0.29	-1.9
6,919	-		Shewana3_4147	0.30	-1.0
6,919	-		Shewana3_4147	0.30	+1.1
6,919	-		Shewana3_4147	0.30	+0.3
6,919	-		Shewana3_4147	0.30	+0.6
6,919	-		Shewana3_4147	0.30	-0.1
6,919	-		Shewana3_4147	0.30	-0.8
6,940	+		Shewana3_4147	0.31	+0.1
6,940	+		Shewana3_4147	0.31	+3.0
6,948	-		Shewana3_4147	0.32	+0.4
6,948	-		Shewana3_4147	0.32	+0.9
6,987	+		Shewana3_4147	0.35	+0.2
6,987	+		Shewana3_4147	0.35	-0.4
6,987	+		Shewana3_4147	0.35	+0.2
6,987	+		Shewana3_4147	0.35	+1.2
6,988	+		Shewana3_4147	0.35	+1.2
6,995	-		Shewana3_4147	0.36	-1.3
6,995	-		Shewana3_4147	0.36	-1.4
6,995	-		Shewana3_4147	0.36	-0.8
6,995	-		Shewana3_4147	0.36	-0.6
6,995	-		Shewana3_4147	0.36	-2.7
6,995	-		Shewana3_4147	0.36	-0.8
6,995	-		Shewana3_4147	0.36	+0.8
6,995	-		Shewana3_4147	0.36	+0.2
6,995	-		Shewana3_4147	0.36	+0.4
6,995	-		Shewana3_4147	0.36	+0.8
6,995	-		Shewana3_4147	0.36	+0.5
7,010	+		Shewana3_4147	0.37	+0.2
7,010	+		Shewana3_4147	0.37	+1.2
7,010	+		Shewana3_4147	0.37	+0.2
7,010	+		Shewana3_4147	0.37	+0.2
7,010	+		Shewana3_4147	0.37	+1.2
7,010	+		Shewana3_4147	0.37	+0.6
7,010	+		Shewana3_4147	0.37	+1.2
7,010	+		Shewana3_4147	0.37	+1.2
7,010	+		Shewana3_4147	0.37	+1.2
7,010	+		Shewana3_4147	0.37	-0.1
7,018	-		Shewana3_4147	0.38	-1.8
7,018	-		Shewana3_4147	0.38	-4.1
7,018	-		Shewana3_4147	0.38	+0.3
7,018	-		Shewana3_4147	0.38	-0.4
7,018	-		Shewana3_4147	0.38	+0.3
7,018	-		Shewana3_4147	0.38	+0.2
7,018	-		Shewana3_4147	0.38	-0.4
7,018	-		Shewana3_4147	0.38	+0.0
7,018	-		Shewana3_4147	0.38	-1.5
7,018	-		Shewana3_4147	0.38	+0.1
7,018	-		Shewana3_4147	0.38	+5.0
7,018	-		Shewana3_4147	0.38	-1.6
7,018	-		Shewana3_4147	0.38	-1.1
7,018	-		Shewana3_4147	0.38	-1.0
7,034	-		Shewana3_4147	0.39	-0.3
7,034	-		Shewana3_4147	0.39	-0.4
7,034	-		Shewana3_4147	0.39	+1.9
7,049	+		Shewana3_4147	0.40	-0.9
7,054	+		Shewana3_4147	0.41	+1.2
7,079	+		Shewana3_4147	0.43	-0.4
7,079	+				+1.2
7,079	+		Shewana3_4147	0.43	+0.6
7,079	+		Shewana3_4147	0.43	-2.4
7,079	+		Shewana3_4147	0.43	+1.2
7,079	+		Shewana3_4147	0.43	-0.4
7,079	+		Shewana3_4147	0.43	+3.0
7,079	+		Shewana3_4147	0.43	+1.2
7,079	+		Shewana3_4147	0.43	+1.2
7,087	-		Shewana3_4147	0.43	-2.3
7,087	-		Shewana3_4147	0.43	+0.8
7,087	-		Shewana3_4147	0.43	+3.7
7,087	-		Shewana3_4147	0.43	+0.6
7,093	+		Shewana3_4147	0.44	+0.2
7,101	+		Shewana3_4147	0.45	+1.2
7,142	+		Shewana3_4147	0.48	-1.6
7,142	+		Shewana3_4147	0.48	-0.4
7,142	+		Shewana3_4147	0.48	+1.2
7,142	+		Shewana3_4147	0.48	+1.2
7,142	+		Shewana3_4147	0.48	-0.1
7,142	+		Shewana3_4147	0.48	+2.2
7,142	+		Shewana3_4147	0.48	+1.2
7,142	+		Shewana3_4147	0.48	+1.2
7,142	+		Shewana3_4147	0.48	+0.5
7,142	+		Shewana3_4147	0.48	+0.5
7,142	+		Shewana3_4147	0.48	+0.2
7,150	-		Shewana3_4147	0.49	+0.6
7,150	-		Shewana3_4147	0.49	-0.8
7,150	-		Shewana3_4147	0.49	-1.2
7,150	-		Shewana3_4147	0.49	-1.1
7,150	-		Shewana3_4147	0.49	+0.6
7,150	-		Shewana3_4147	0.49	+1.2
7,150	-		Shewana3_4147	0.49	+1.6
7,150	-		Shewana3_4147	0.49	+0.8
7,150	-		Shewana3_4147	0.49	+1.2
7,150	-		Shewana3_4147	0.49	+1.2
7,150	-		Shewana3_4147	0.49	-4.9
7,150	-		Shewana3_4147	0.49	+1.2
7,150	-		Shewana3_4147	0.49	-1.8
7,150	-		Shewana3_4147	0.49	-1.4
7,150	-		Shewana3_4147	0.49	-0.8
7,150	-		Shewana3_4147	0.49	+1.9
7,162	-		Shewana3_4147	0.50	-0.1
7,167	-		Shewana3_4147	0.50	-0.4
7,199	-		Shewana3_4147	0.53	-1.0
7,205	+		Shewana3_4147	0.53	+0.2
7,205	+		Shewana3_4147	0.53	+1.2
7,205	+		Shewana3_4147	0.53	-1.6
7,213	-		Shewana3_4147	0.54	+1.3
7,223	-		Shewana3_4147	0.54	-1.1
7,223	-		Shewana3_4147	0.54	-0.4
7,239	-		Shewana3_4147	0.56	-0.3
7,239	-		Shewana3_4147	0.56	+0.6
7,239	-		Shewana3_4147	0.56	-0.5
7,239	-		Shewana3_4147	0.56	+2.3
7,239	-		Shewana3_4147	0.56	-0.8
7,341	-		Shewana3_4147	0.64	-2.1
7,487	+		Shewana3_4147	0.76	+1.5
7,692	+				+0.2
7,787	-				-0.1
7,788	-				+0.6
7,788	-				+0.1
7,815	+				+0.2
7,815	+				-1.5
7,821	+				-0.1
7,823	-				-0.7
7,841	+				-0.2
7,841	+				-0.2
7,841	+				+0.5
7,849	-				-0.3
7,849	-				+0.8
7,856	+				-1.1
7,859	+				-0.6
7,917	+				-0.2
8,018	+				-3.2
8,068	+				+1.2
8,081	+				+0.5
8,097	-				+0.0
8,156	-				+0.4
8,207	+				-0.1
8,215	-				-0.8
8,233	-		Shewana3_4148	0.13	+0.5
8,267	+		Shewana3_4148	0.21	-1.1
8,319	+		Shewana3_4148	0.34	-0.5
8,332	+		Shewana3_4148	0.38	-2.0
8,342	+		Shewana3_4148	0.40	-4.1
8,443	+		Shewana3_4148	0.65	-2.9
8,450	+		Shewana3_4148	0.67	-1.1
8,517	-		Shewana3_4148	0.84	-1.3
8,517	-		Shewana3_4148	0.84	+0.4
8,517	-		Shewana3_4148	0.84	-0.1
8,519	+		Shewana3_4148	0.84	+1.2
8,527	-		Shewana3_4148	0.86	-2.2
8,527	-		Shewana3_4148	0.86	-0.3
8,527	-		Shewana3_4148	0.86	-1.3
8,588	+				+0.4
8,628	+				+1.6
8,731	+				-0.8
8,731	+				+0.8
8,739	+				-0.1
8,739	-				+1.2
8,739	-				+2.4
8,739	-				-0.3
8,739	-				+1.2
8,739	-				-0.8
8,739	-				-1.1
8,741	+				-0.6
8,747	-				-0.3
8,747	-				-1.4
8,761	+				-3.0
8,761	+				-2.1
8,769	-				-0.4