Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_801

Experiment: Carnitine Hydrochloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_800 and Pf1N1B4_801 are separated by 54 nucleotidesPf1N1B4_801 and Pf1N1B4_802 are separated by 655 nucleotides Pf1N1B4_800 - OpgC protein, at 912,820 to 913,944 _800 Pf1N1B4_801 - D-serine/D-alanine/glycine transporter, at 913,999 to 915,420 _801 Pf1N1B4_802 - Membrane carboxypeptidase (penicillin-binding protein), at 916,076 to 916,807 _802 Position (kb) 913 914 915 916Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 913.066 kb on + strand, within Pf1N1B4_800at 913.066 kb on + strand, within Pf1N1B4_800at 913.066 kb on + strand, within Pf1N1B4_800at 913.066 kb on + strand, within Pf1N1B4_800at 913.066 kb on + strand, within Pf1N1B4_800at 913.066 kb on + strand, within Pf1N1B4_800at 913.066 kb on + strand, within Pf1N1B4_800at 913.066 kb on + strand, within Pf1N1B4_800at 913.067 kb on - strand, within Pf1N1B4_800at 913.067 kb on - strand, within Pf1N1B4_800at 913.067 kb on - strand, within Pf1N1B4_800at 913.067 kb on - strand, within Pf1N1B4_800at 913.077 kb on + strand, within Pf1N1B4_800at 913.078 kb on - strand, within Pf1N1B4_800at 913.078 kb on - strand, within Pf1N1B4_800at 913.168 kb on + strand, within Pf1N1B4_800at 913.168 kb on + strand, within Pf1N1B4_800at 913.254 kb on + strand, within Pf1N1B4_800at 913.254 kb on + strand, within Pf1N1B4_800at 913.255 kb on - strand, within Pf1N1B4_800at 913.312 kb on + strand, within Pf1N1B4_800at 913.312 kb on + strand, within Pf1N1B4_800at 913.312 kb on + strand, within Pf1N1B4_800at 913.312 kb on + strand, within Pf1N1B4_800at 913.313 kb on - strand, within Pf1N1B4_800at 913.339 kb on + strand, within Pf1N1B4_800at 913.339 kb on + strand, within Pf1N1B4_800at 913.339 kb on + strand, within Pf1N1B4_800at 913.339 kb on + strand, within Pf1N1B4_800at 913.339 kb on + strandat 913.429 kb on - strand, within Pf1N1B4_800at 913.429 kb on - strand, within Pf1N1B4_800at 913.525 kb on + strand, within Pf1N1B4_800at 913.526 kb on - strand, within Pf1N1B4_800at 913.675 kb on + strand, within Pf1N1B4_800at 913.676 kb on - strand, within Pf1N1B4_800at 913.676 kb on - strand, within Pf1N1B4_800at 913.923 kb on + strandat 913.923 kb on + strandat 913.923 kb on + strandat 913.923 kb on + strandat 913.924 kb on - strandat 913.924 kb on - strandat 913.942 kb on + strandat 913.942 kb on + strandat 913.942 kb on + strandat 913.943 kb on - strandat 913.966 kb on - strandat 914.000 kb on + strandat 914.001 kb on - strandat 914.001 kb on - strandat 914.001 kb on - strandat 914.058 kb on - strandat 914.099 kb on + strandat 914.099 kb on + strandat 914.100 kb on - strandat 914.100 kb on - strandat 914.100 kb on - strandat 914.127 kb on - strandat 914.127 kb on - strandat 914.127 kb on - strandat 914.171 kb on + strand, within Pf1N1B4_801at 914.202 kb on - strandat 914.339 kb on + strand, within Pf1N1B4_801at 914.339 kb on + strand, within Pf1N1B4_801at 914.339 kb on + strand, within Pf1N1B4_801at 914.339 kb on + strand, within Pf1N1B4_801at 914.339 kb on + strandat 914.339 kb on + strand, within Pf1N1B4_801at 914.340 kb on - strand, within Pf1N1B4_801at 914.343 kb on + strand, within Pf1N1B4_801at 914.344 kb on - strand, within Pf1N1B4_801at 914.344 kb on - strand, within Pf1N1B4_801at 914.344 kb on - strand, within Pf1N1B4_801at 914.459 kb on + strand, within Pf1N1B4_801at 914.616 kb on - strand, within Pf1N1B4_801at 914.649 kb on - strand, within Pf1N1B4_801at 914.649 kb on - strand, within Pf1N1B4_801at 914.649 kb on - strand, within Pf1N1B4_801at 915.050 kb on + strand, within Pf1N1B4_801at 915.050 kb on + strand, within Pf1N1B4_801at 915.050 kb on + strand, within Pf1N1B4_801at 915.051 kb on - strand, within Pf1N1B4_801at 915.051 kb on - strand, within Pf1N1B4_801at 915.051 kb on - strand, within Pf1N1B4_801at 915.051 kb on - strand, within Pf1N1B4_801at 915.051 kb on - strand, within Pf1N1B4_801at 915.051 kb on - strand, within Pf1N1B4_801at 915.104 kb on + strand, within Pf1N1B4_801at 915.104 kb on + strand, within Pf1N1B4_801at 915.104 kb on + strand, within Pf1N1B4_801at 915.105 kb on - strand, within Pf1N1B4_801at 915.105 kb on - strand, within Pf1N1B4_801at 915.143 kb on + strand, within Pf1N1B4_801at 915.143 kb on + strand, within Pf1N1B4_801at 915.143 kb on + strand, within Pf1N1B4_801at 915.143 kb on + strand, within Pf1N1B4_801at 915.144 kb on - strand, within Pf1N1B4_801at 915.144 kb on - strand, within Pf1N1B4_801at 915.214 kb on - strand, within Pf1N1B4_801at 915.245 kb on + strand, within Pf1N1B4_801at 915.246 kb on - strand, within Pf1N1B4_801at 915.342 kb on + strandat 915.366 kb on + strandat 915.427 kb on - strandat 915.565 kb on + strandat 915.566 kb on - strandat 915.566 kb on - strandat 915.566 kb on - strandat 915.661 kb on + strandat 915.672 kb on - strandat 915.672 kb on - strandat 915.697 kb on - strandat 915.729 kb on - strandat 915.729 kb on - strandat 915.729 kb on - strandat 915.729 kb on - strandat 915.755 kb on - strandat 915.755 kb on - strandat 915.761 kb on - strandat 915.772 kb on + strandat 915.772 kb on + strandat 915.773 kb on - strandat 915.985 kb on + strandat 916.028 kb on + strandat 916.029 kb on - strandat 916.105 kb on + strandat 916.147 kb on - strandat 916.283 kb on + strand, within Pf1N1B4_802at 916.419 kb on - strand, within Pf1N1B4_802at 916.419 kb on - strand, within Pf1N1B4_802

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Per-strain Table

Position Strand Gene LocusTag Fraction Carnitine Hydrochloride (N)
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913,066 + Pf1N1B4_800 0.22 -0.0
913,066 + Pf1N1B4_800 0.22 -0.4
913,066 + Pf1N1B4_800 0.22 +1.0
913,066 + Pf1N1B4_800 0.22 -0.6
913,066 + Pf1N1B4_800 0.22 +1.3
913,066 + Pf1N1B4_800 0.22 -1.0
913,066 + Pf1N1B4_800 0.22 +0.3
913,066 + Pf1N1B4_800 0.22 +0.4
913,067 - Pf1N1B4_800 0.22 -0.6
913,067 - Pf1N1B4_800 0.22 +0.6
913,067 - Pf1N1B4_800 0.22 +1.0
913,067 - Pf1N1B4_800 0.22 +0.5
913,077 + Pf1N1B4_800 0.23 -0.0
913,078 - Pf1N1B4_800 0.23 -0.4
913,078 - Pf1N1B4_800 0.23 -1.6
913,168 + Pf1N1B4_800 0.31 -2.0
913,168 + Pf1N1B4_800 0.31 +0.6
913,254 + Pf1N1B4_800 0.39 -0.8
913,254 + Pf1N1B4_800 0.39 -0.6
913,255 - Pf1N1B4_800 0.39 +1.0
913,312 + Pf1N1B4_800 0.44 +1.0
913,312 + Pf1N1B4_800 0.44 +2.3
913,312 + Pf1N1B4_800 0.44 +1.6
913,312 + Pf1N1B4_800 0.44 -0.0
913,313 - Pf1N1B4_800 0.44 -0.0
913,339 + Pf1N1B4_800 0.46 -0.5
913,339 + Pf1N1B4_800 0.46 +0.3
913,339 + Pf1N1B4_800 0.46 +0.6
913,339 + Pf1N1B4_800 0.46 -0.0
913,339 + -1.0
913,429 - Pf1N1B4_800 0.54 +1.0
913,429 - Pf1N1B4_800 0.54 +0.6
913,525 + Pf1N1B4_800 0.63 +3.0
913,526 - Pf1N1B4_800 0.63 -0.0
913,675 + Pf1N1B4_800 0.76 -1.0
913,676 - Pf1N1B4_800 0.76 -1.6
913,676 - Pf1N1B4_800 0.76 -1.6
913,923 + -1.0
913,923 + -0.0
913,923 + +1.0
913,923 + -1.0
913,924 - +0.4
913,924 - -0.4
913,942 + -0.0
913,942 + +0.6
913,942 + +2.0
913,943 - +2.6
913,966 - -1.0
914,000 + +1.4
914,001 - -1.4
914,001 - -0.8
914,001 - +0.3
914,058 - -0.8
914,099 + +0.3
914,099 + +0.5
914,100 - -0.9
914,100 - -0.3
914,100 - -0.4
914,127 - -0.6
914,127 - +0.4
914,127 - -0.0
914,171 + Pf1N1B4_801 0.12 +0.6
914,202 - -0.0
914,339 + Pf1N1B4_801 0.24 -0.0
914,339 + Pf1N1B4_801 0.24 -0.0
914,339 + Pf1N1B4_801 0.24 -1.8
914,339 + Pf1N1B4_801 0.24 -1.7
914,339 + +1.0
914,339 + Pf1N1B4_801 0.24 +0.6
914,340 - Pf1N1B4_801 0.24 +0.3
914,343 + Pf1N1B4_801 0.24 -1.0
914,344 - Pf1N1B4_801 0.24 +1.6
914,344 - Pf1N1B4_801 0.24 -0.0
914,344 - Pf1N1B4_801 0.24 +0.6
914,459 + Pf1N1B4_801 0.32 -0.0
914,616 - Pf1N1B4_801 0.43 +0.4
914,649 - Pf1N1B4_801 0.46 +0.7
914,649 - Pf1N1B4_801 0.46 +0.2
914,649 - Pf1N1B4_801 0.46 -0.3
915,050 + Pf1N1B4_801 0.74 -1.0
915,050 + Pf1N1B4_801 0.74 +1.0
915,050 + Pf1N1B4_801 0.74 -0.4
915,051 - Pf1N1B4_801 0.74 -0.0
915,051 - Pf1N1B4_801 0.74 +1.0
915,051 - Pf1N1B4_801 0.74 +0.2
915,051 - Pf1N1B4_801 0.74 -0.6
915,051 - Pf1N1B4_801 0.74 -0.3
915,051 - Pf1N1B4_801 0.74 -0.3
915,104 + Pf1N1B4_801 0.78 -0.0
915,104 + Pf1N1B4_801 0.78 -0.0
915,104 + Pf1N1B4_801 0.78 -0.4
915,105 - Pf1N1B4_801 0.78 -0.4
915,105 - Pf1N1B4_801 0.78 -0.4
915,143 + Pf1N1B4_801 0.80 -1.6
915,143 + Pf1N1B4_801 0.80 +1.2
915,143 + Pf1N1B4_801 0.80 -1.2
915,143 + Pf1N1B4_801 0.80 -1.6
915,144 - Pf1N1B4_801 0.81 -0.0
915,144 - Pf1N1B4_801 0.81 +1.4
915,214 - Pf1N1B4_801 0.85 +0.6
915,245 + Pf1N1B4_801 0.88 -2.0
915,246 - Pf1N1B4_801 0.88 -0.4
915,342 + +1.0
915,366 + +0.4
915,427 - -1.4
915,565 + +0.2
915,566 - -3.0
915,566 - +0.6
915,566 - -1.6
915,661 + -1.0
915,672 - -0.6
915,672 - -0.3
915,697 - -0.6
915,729 - -1.0
915,729 - -1.0
915,729 - +2.0
915,729 - -0.0
915,755 - -2.0
915,755 - +1.3
915,761 - +1.6
915,772 + +0.3
915,772 + -0.4
915,773 - -0.8
915,985 + -0.8
916,028 + -1.0
916,029 - -0.4
916,105 + -0.4
916,147 - -0.0
916,283 + Pf1N1B4_802 0.28 +0.6
916,419 - Pf1N1B4_802 0.47 -1.6
916,419 - Pf1N1B4_802 0.47 +1.6

Or see this region's nucleotide sequence